Wall clock time and date at job start Fri Apr 10 2020 18:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42889 * 114.00208 * 2 1 4 4 H 1.09003 * 109.47296 * 30.00401 * 3 2 1 5 5 C 1.53002 * 109.47722 * 270.00015 * 3 2 1 6 6 C 1.50706 * 109.47039 * 149.99842 * 3 2 1 7 7 O 1.21281 * 119.99936 * 5.00737 * 6 3 2 8 8 N 1.34777 * 120.00080 * 185.00163 * 6 3 2 9 9 C 1.46498 * 119.99926 * 180.02562 * 8 6 3 10 10 C 1.52997 * 109.47288 * 179.97438 * 9 8 6 11 11 H 1.09003 * 110.64659 * 303.30420 * 10 9 8 12 12 C 1.54604 * 110.72305 * 66.45374 * 10 9 8 13 13 C 1.53991 * 105.14050 * 140.31456 * 12 10 9 14 14 N 1.47905 * 107.05809 * 1.22852 * 13 12 10 15 15 C 1.46894 * 111.00295 * 214.15199 * 14 13 12 16 16 C 1.50695 * 109.47705 * 176.63867 * 15 14 13 17 17 O 1.21293 * 119.99598 * 6.13247 * 16 15 14 18 18 N 1.34770 * 120.00499 * 186.14160 * 16 15 14 19 19 C 1.37094 * 120.00231 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00226 * 359.97438 * 19 18 16 21 21 C 1.38957 * 120.00171 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99892 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46644 * 180.02562 * 23 21 19 25 25 H 1.48496 * 109.47126 * 300.00099 * 23 21 19 26 26 H 1.48495 * 109.47041 * 60.00543 * 23 21 19 27 27 C 1.48535 * 105.82048 * 334.66782 * 14 13 12 28 28 H 1.08994 * 109.46872 * 299.99711 * 1 2 3 29 29 H 1.09006 * 109.47142 * 59.99777 * 1 2 3 30 30 H 1.09000 * 109.47529 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46681 * 59.99977 * 5 3 2 32 32 H 1.08995 * 109.46936 * 179.97438 * 5 3 2 33 33 H 1.08993 * 109.46991 * 300.00581 * 5 3 2 34 34 H 0.97003 * 119.99894 * 0.02562 * 8 6 3 35 35 H 1.09002 * 109.46839 * 60.00256 * 9 8 6 36 36 H 1.08996 * 109.47507 * 300.00019 * 9 8 6 37 37 H 1.08996 * 110.30520 * 21.40279 * 12 10 9 38 38 H 1.08997 * 110.30761 * 259.23698 * 12 10 9 39 39 H 1.08993 * 109.92317 * 241.87814 * 13 12 10 40 40 H 1.09005 * 110.08057 * 120.66782 * 13 12 10 41 41 H 1.09010 * 109.46872 * 56.63525 * 15 14 13 42 42 H 1.09001 * 109.47040 * 296.64207 * 15 14 13 43 43 H 0.97003 * 120.00014 * 359.97438 * 18 16 15 44 44 H 0.97000 * 119.99605 * 180.02562 * 22 21 19 45 45 H 1.08996 * 110.66795 * 157.63752 * 27 14 13 46 46 H 1.08995 * 110.66937 * 280.77474 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2637 0.7105 7 8 3.7897 0.2043 1.0913 8 7 4.0255 2.4038 0.9225 9 6 5.3171 2.3632 1.6126 10 6 5.8817 3.7810 1.7221 11 1 5.9694 4.2369 0.7359 12 6 5.0021 4.6499 2.6503 13 6 5.9947 5.5000 3.4649 14 7 7.3529 5.1491 2.9963 15 6 8.3215 5.2065 4.0991 16 6 9.6742 4.7642 3.6034 17 8 9.8442 4.5407 2.4234 18 7 10.6949 4.6170 4.4710 19 6 11.9252 4.2142 4.0201 20 1 12.0765 4.0145 2.9695 21 6 12.9778 4.0628 4.9146 22 7 12.7936 4.3053 6.1929 23 14 14.6540 3.5133 4.3001 24 1 15.5972 3.4288 5.4441 25 1 14.5333 2.1792 3.6591 26 1 15.1640 4.4945 3.3090 27 6 7.2495 3.7719 2.4497 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.2569 1.8015 -1.9562 32 1 2.6607 2.7673 -1.4423 33 1 2.8829 1.0775 -1.9563 34 1 3.6646 3.2512 0.6181 35 1 6.0106 1.7389 1.0492 36 1 5.1827 1.9472 2.6111 37 1 4.4125 4.0174 3.3137 38 1 4.3491 5.2927 2.0599 39 1 5.8971 5.2701 4.5258 40 1 5.8060 6.5602 3.2959 41 1 7.9958 4.5467 4.9035 42 1 8.3875 6.2286 4.4720 43 1 10.5590 4.7960 5.4147 44 1 13.5284 4.2001 6.8173 45 1 8.0583 3.5756 1.7458 46 1 7.2520 3.0372 3.2548 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493189115.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:35 Heat of formation + Delta-G solvation = -112.544757 kcal Electronic energy + Delta-G solvation = -25915.645394 eV Core-core repulsion = 22033.452155 eV Total energy + Delta-G solvation = -3882.193239 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.29650 -39.27995 -38.00543 -37.49191 -35.11752 -33.90832 -32.63205 -31.48910 -31.10252 -29.32924 -27.22667 -27.09137 -25.56692 -24.19631 -23.58020 -21.29256 -20.43690 -20.27349 -19.17881 -17.89054 -17.69472 -17.33814 -16.47311 -16.07199 -15.60996 -15.38966 -15.29297 -14.96888 -14.65384 -14.47138 -14.26175 -13.75810 -13.72474 -13.61994 -13.17282 -13.02586 -12.79671 -12.70131 -12.33957 -12.18696 -12.04197 -11.74136 -11.58829 -11.49816 -11.21135 -11.05594 -11.02054 -10.78953 -10.60723 -10.42968 -10.38047 -10.20893 -9.74806 -9.46976 -9.26708 -8.42591 -8.02853 -7.92528 -6.41272 -3.82051 2.39332 2.58365 3.20890 3.26609 3.31014 3.60060 3.90396 4.04237 4.24424 4.30138 4.45366 4.56054 4.56713 4.72136 4.77362 4.85871 4.94153 5.08305 5.13338 5.19629 5.24904 5.25760 5.27295 5.29676 5.45903 5.64489 5.68541 5.70900 5.72500 5.78022 5.84465 5.92201 6.07627 6.14757 6.27072 6.28913 6.52207 6.61130 7.16401 7.23429 7.26891 7.55548 8.00621 8.06256 8.61822 9.18275 9.54390 10.06008 10.76362 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.023545 B = 0.002201 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.926319 B =12720.957954 C =13353.571227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.070 3.930 4 H 0.086 0.914 5 C -0.171 4.171 6 C 0.511 3.489 7 O -0.518 6.518 8 N -0.725 5.725 9 C 0.129 3.871 10 C -0.106 4.106 11 H 0.090 0.910 12 C -0.126 4.126 13 C 0.033 3.967 14 N -0.493 5.493 15 C 0.037 3.963 16 C 0.442 3.558 17 O -0.579 6.579 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.285 1.285 25 H -0.274 1.274 26 H -0.273 1.273 27 C 0.049 3.951 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.400 0.600 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.042 0.958 40 H 0.077 0.923 41 H 0.048 0.952 42 H 0.090 0.910 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.110 0.890 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.986 -0.136 -8.332 26.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.008 3.992 4 H 0.104 0.896 5 C -0.229 4.229 6 C 0.295 3.705 7 O -0.392 6.392 8 N -0.379 5.379 9 C 0.006 3.994 10 C -0.125 4.125 11 H 0.109 0.891 12 C -0.164 4.164 13 C -0.096 4.096 14 N -0.217 5.217 15 C -0.095 4.095 16 C 0.227 3.773 17 O -0.463 6.463 18 N -0.199 5.199 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.210 1.210 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.079 4.079 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.234 0.766 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.108 0.892 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.128 0.872 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -24.083 -0.893 -9.051 25.743 hybrid contribution 0.125 0.058 1.023 1.032 sum -23.959 -0.835 -8.028 25.282 Atomic orbital electron populations 1.22890 0.80585 1.03341 1.00005 1.88066 1.19669 1.25112 1.94921 1.21938 0.93529 0.86913 0.96808 0.89644 1.22233 1.03490 1.02151 0.94980 1.20382 0.86226 0.84187 0.79708 1.90751 1.69101 1.29714 1.49626 1.45929 1.22212 1.09216 1.60522 1.21408 0.83517 0.96994 0.97515 1.22378 0.95897 0.93713 1.00517 0.89123 1.22485 0.97617 0.98117 0.98158 1.22909 0.88990 1.00286 0.97376 1.64531 1.03985 1.24030 1.29167 1.22084 0.93003 1.01979 0.92401 1.19701 0.85548 0.84903 0.87128 1.90484 1.83620 1.55695 1.16547 1.41858 1.09215 1.59296 1.09568 1.19649 0.85691 1.41880 0.95662 0.87938 1.25270 1.00109 0.97574 0.95003 1.69604 1.33635 1.49166 1.01896 0.85913 0.80979 0.79356 0.77946 1.20994 1.19894 1.19884 1.23274 0.96329 0.89243 0.99031 0.93816 0.93805 0.89086 0.91198 0.90804 0.90901 0.76622 0.90801 0.91258 0.91433 0.91187 0.93945 0.90455 0.93435 0.89156 0.77490 0.91820 0.87197 0.94081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.82 101.05 1.09 1.27 16 2 O -0.36 -3.81 9.89 -55.09 -0.54 -4.35 16 3 C 0.07 0.58 3.13 -27.88 -0.09 0.49 16 4 H 0.09 0.46 7.79 -51.93 -0.40 0.06 16 5 C -0.17 -1.04 9.48 37.16 0.35 -0.69 16 6 C 0.51 5.90 7.18 -10.98 -0.08 5.82 16 7 O -0.52 -8.67 16.51 -14.30 -0.24 -8.90 16 8 N -0.72 -6.59 5.36 -60.29 -0.32 -6.92 16 9 C 0.13 1.45 5.00 -4.04 -0.02 1.43 16 10 C -0.11 -1.19 3.13 -88.76 -0.28 -1.47 16 11 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 12 C -0.13 -1.21 6.20 -25.37 -0.16 -1.36 16 13 C 0.03 0.39 6.70 -2.75 -0.02 0.37 16 14 N -0.49 -8.02 5.11 -231.90 -1.18 -9.21 16 15 C 0.04 0.66 5.30 -4.98 -0.03 0.63 16 16 C 0.44 10.38 7.41 -10.99 -0.08 10.30 16 17 O -0.58 -15.39 13.87 5.55 0.08 -15.32 16 18 N -0.56 -14.27 5.29 -10.97 -0.06 -14.33 16 19 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 20 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16 23 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 C 0.05 0.78 5.03 -1.90 -0.01 0.77 16 28 H 0.04 0.22 8.08 -51.93 -0.42 -0.20 16 29 H 0.04 0.19 7.87 -51.93 -0.41 -0.22 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.32 7.87 -51.93 -0.41 -0.09 16 32 H 0.07 0.32 7.92 -51.93 -0.41 -0.09 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.40 2.38 8.11 -40.82 -0.33 2.05 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 37 H 0.07 0.61 7.80 -51.93 -0.41 0.21 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.04 0.49 7.68 -51.93 -0.40 0.09 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.78 7.99 -51.92 -0.41 0.37 16 42 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.39 9.53 7.90 -40.82 -0.32 9.20 16 44 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.11 2.10 6.43 -51.93 -0.33 1.77 16 46 H 0.04 0.66 7.92 -51.93 -0.41 0.25 16 LS Contribution 378.41 15.07 5.70 5.70 Total: -1.00 -34.94 378.41 -7.98 -42.92 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -7.56 Total: 8.56 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 0.45 Total: 9.57 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.84 Total: -54.33 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.70 Total: -28.57 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.94 -7.98 -42.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493189115.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.622 kcal (2) G-P(sol) polarization free energy of solvation -34.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds