Wall clock time and date at job start Fri Apr 10 2020 18:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42889 * 114.00208 * 2 1 4 4 H 1.09003 * 109.47296 * 30.00401 * 3 2 1 5 5 C 1.53002 * 109.47722 * 270.00015 * 3 2 1 6 6 C 1.50706 * 109.47039 * 149.99842 * 3 2 1 7 7 O 1.21281 * 119.99936 * 5.00737 * 6 3 2 8 8 N 1.34777 * 120.00080 * 185.00163 * 6 3 2 9 9 C 1.46498 * 119.99926 * 180.02562 * 8 6 3 10 10 C 1.52997 * 109.47288 * 179.97438 * 9 8 6 11 11 H 1.09003 * 110.64659 * 303.30420 * 10 9 8 12 12 C 1.54604 * 110.72305 * 66.45374 * 10 9 8 13 13 C 1.53991 * 105.14050 * 140.31456 * 12 10 9 14 14 N 1.47905 * 107.05809 * 1.22852 * 13 12 10 15 15 C 1.46894 * 111.00295 * 214.15199 * 14 13 12 16 16 C 1.50695 * 109.47705 * 176.63867 * 15 14 13 17 17 O 1.21293 * 119.99598 * 6.13247 * 16 15 14 18 18 N 1.34770 * 120.00499 * 186.14160 * 16 15 14 19 19 C 1.37094 * 120.00231 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00226 * 359.97438 * 19 18 16 21 21 C 1.38957 * 120.00171 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99892 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46644 * 180.02562 * 23 21 19 25 25 H 1.48496 * 109.47126 * 300.00099 * 23 21 19 26 26 H 1.48495 * 109.47041 * 60.00543 * 23 21 19 27 27 C 1.48535 * 105.82048 * 334.66782 * 14 13 12 28 28 H 1.08994 * 109.46872 * 299.99711 * 1 2 3 29 29 H 1.09006 * 109.47142 * 59.99777 * 1 2 3 30 30 H 1.09000 * 109.47529 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46681 * 59.99977 * 5 3 2 32 32 H 1.08995 * 109.46936 * 179.97438 * 5 3 2 33 33 H 1.08993 * 109.46991 * 300.00581 * 5 3 2 34 34 H 0.97003 * 119.99894 * 0.02562 * 8 6 3 35 35 H 1.09002 * 109.46839 * 60.00256 * 9 8 6 36 36 H 1.08996 * 109.47507 * 300.00019 * 9 8 6 37 37 H 1.08996 * 110.30520 * 21.40279 * 12 10 9 38 38 H 1.08997 * 110.30761 * 259.23698 * 12 10 9 39 39 H 1.08993 * 109.92317 * 241.87814 * 13 12 10 40 40 H 1.09005 * 110.08057 * 120.66782 * 13 12 10 41 41 H 1.09010 * 109.46872 * 56.63525 * 15 14 13 42 42 H 1.09001 * 109.47040 * 296.64207 * 15 14 13 43 43 H 0.97003 * 120.00014 * 359.97438 * 18 16 15 44 44 H 0.97000 * 119.99605 * 180.02562 * 22 21 19 45 45 H 1.08996 * 110.66795 * 157.63752 * 27 14 13 46 46 H 1.08995 * 110.66937 * 280.77474 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2637 0.7105 7 8 3.7897 0.2043 1.0913 8 7 4.0255 2.4038 0.9225 9 6 5.3171 2.3632 1.6126 10 6 5.8817 3.7810 1.7221 11 1 5.9694 4.2369 0.7359 12 6 5.0021 4.6499 2.6503 13 6 5.9947 5.5000 3.4649 14 7 7.3529 5.1491 2.9963 15 6 8.3215 5.2065 4.0991 16 6 9.6742 4.7642 3.6034 17 8 9.8442 4.5407 2.4234 18 7 10.6949 4.6170 4.4710 19 6 11.9252 4.2142 4.0201 20 1 12.0765 4.0145 2.9695 21 6 12.9778 4.0628 4.9146 22 7 12.7936 4.3053 6.1929 23 14 14.6540 3.5133 4.3001 24 1 15.5972 3.4288 5.4441 25 1 14.5333 2.1792 3.6591 26 1 15.1640 4.4945 3.3090 27 6 7.2495 3.7719 2.4497 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.2569 1.8015 -1.9562 32 1 2.6607 2.7673 -1.4423 33 1 2.8829 1.0775 -1.9563 34 1 3.6646 3.2512 0.6181 35 1 6.0106 1.7389 1.0492 36 1 5.1827 1.9472 2.6111 37 1 4.4125 4.0174 3.3137 38 1 4.3491 5.2927 2.0599 39 1 5.8971 5.2701 4.5258 40 1 5.8060 6.5602 3.2959 41 1 7.9958 4.5467 4.9035 42 1 8.3875 6.2286 4.4720 43 1 10.5590 4.7960 5.4147 44 1 13.5284 4.2001 6.8173 45 1 8.0583 3.5756 1.7458 46 1 7.2520 3.0372 3.2548 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493189115.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:35 Heat of formation + Delta-G solvation = -140.815663 kcal Electronic energy + Delta-G solvation = -25916.871312 eV Core-core repulsion = 22033.452155 eV Total energy + Delta-G solvation = -3883.419157 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.20415 -40.61882 -39.30289 -38.51649 -36.25876 -35.84055 -33.63790 -33.21553 -32.18882 -30.31959 -28.54931 -27.68931 -26.86297 -25.69007 -24.39689 -22.41962 -21.38208 -21.20394 -20.97881 -19.87995 -18.50244 -18.09021 -17.83946 -16.98760 -16.84754 -16.60787 -16.39025 -16.22010 -15.97459 -15.66642 -15.58587 -15.22150 -14.83866 -14.51186 -14.29562 -14.07689 -13.79053 -13.58763 -13.50184 -13.30435 -13.18448 -12.92847 -12.86595 -12.75461 -12.44336 -12.39525 -12.17164 -12.11644 -12.02659 -11.89660 -11.50284 -11.45950 -11.06700 -10.53914 -10.26513 -10.18403 -10.01740 -9.31758 -8.47505 -5.96075 1.38698 1.40445 1.51426 1.52589 1.82916 2.03878 2.27916 2.84594 3.01456 3.19277 3.31203 3.56408 3.72820 3.77782 3.89002 3.93504 4.05288 4.28207 4.30921 4.33688 4.34617 4.46278 4.47482 4.56172 4.58666 4.67749 4.69235 4.76709 4.81193 4.83130 4.87384 4.98295 5.10929 5.20642 5.24266 5.27339 5.38018 5.40147 5.85518 5.97355 6.07506 6.11965 6.53492 6.59526 7.11844 7.19799 7.55040 8.10813 8.69721 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.023545 B = 0.002201 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.926319 B =12720.957954 C =13353.571227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.401 6.401 3 C 0.072 3.928 4 H 0.122 0.878 5 C -0.166 4.166 6 C 0.505 3.495 7 O -0.580 6.580 8 N -0.705 5.705 9 C 0.137 3.863 10 C -0.088 4.088 11 H 0.099 0.901 12 C -0.115 4.115 13 C 0.030 3.970 14 N -0.512 5.512 15 C 0.049 3.951 16 C 0.438 3.562 17 O -0.614 6.614 18 N -0.574 5.574 19 C -0.333 4.333 20 H 0.079 0.921 21 C -0.014 4.014 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.270 1.270 25 H -0.273 1.273 26 H -0.271 1.271 27 C 0.046 3.954 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.048 0.952 34 H 0.420 0.580 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.051 0.949 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.112 0.888 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.066 0.934 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.387 1.521 -8.490 28.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.320 6.320 3 C 0.011 3.989 4 H 0.140 0.860 5 C -0.224 4.224 6 C 0.291 3.709 7 O -0.459 6.459 8 N -0.359 5.359 9 C 0.012 3.988 10 C -0.107 4.107 11 H 0.117 0.883 12 C -0.153 4.153 13 C -0.098 4.098 14 N -0.236 5.236 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.500 6.500 18 N -0.211 5.211 19 C -0.462 4.462 20 H 0.097 0.903 21 C -0.214 4.214 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.194 1.194 25 H -0.199 1.199 26 H -0.196 1.196 27 C -0.082 4.082 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.067 0.933 34 H 0.258 0.742 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.123 0.877 39 H 0.069 0.931 40 H 0.112 0.888 41 H 0.082 0.918 42 H 0.130 0.870 43 H 0.229 0.771 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -26.529 0.824 -9.208 28.094 hybrid contribution 0.823 -0.443 1.051 1.406 sum -25.706 0.381 -8.157 26.972 Atomic orbital electron populations 1.23090 0.78557 1.04096 1.01611 1.88019 1.22035 1.26751 1.95194 1.22089 0.91857 0.87023 0.97909 0.86008 1.22245 1.04325 1.02511 0.93316 1.21191 0.87319 0.83521 0.78836 1.90722 1.70821 1.32017 1.52369 1.45705 1.20981 1.09807 1.59398 1.21150 0.84187 0.96622 0.96803 1.22180 0.93662 0.93984 1.00897 0.88320 1.22492 0.97025 0.97884 0.97849 1.23064 0.86753 1.01658 0.98278 1.64497 1.06117 1.23941 1.29072 1.21966 0.89986 1.03162 0.93164 1.20762 0.87134 0.83042 0.86478 1.90467 1.84663 1.56670 1.18241 1.41935 1.09189 1.60058 1.09964 1.19617 0.87545 1.44043 0.95028 0.90309 1.26049 1.03146 0.97062 0.95122 1.69666 1.34784 1.49148 1.02527 0.84991 0.76813 0.78723 0.77826 1.19449 1.19856 1.19605 1.23115 0.97664 0.89182 0.98266 0.92607 0.91659 0.88981 0.89107 0.88594 0.93255 0.74230 0.93172 0.92354 0.90376 0.87681 0.93092 0.88793 0.91770 0.87045 0.77073 0.91306 0.91539 0.95193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.82 113.37 1.23 1.46 16 2 O -0.40 -8.11 9.89 -129.99 -1.28 -9.40 16 3 C 0.07 1.04 3.13 29.85 0.09 1.13 16 4 H 0.12 0.84 7.79 -2.39 -0.02 0.82 16 5 C -0.17 -1.60 9.48 71.98 0.68 -0.92 16 6 C 0.50 11.30 7.18 87.66 0.63 11.93 16 7 O -0.58 -20.14 16.51 15.96 0.26 -19.88 16 8 N -0.70 -11.60 5.36 -463.06 -2.48 -14.09 16 9 C 0.14 3.06 5.00 86.38 0.43 3.49 16 10 C -0.09 -1.86 3.13 -9.59 -0.03 -1.89 16 11 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 12 C -0.11 -1.77 6.20 31.47 0.20 -1.58 16 13 C 0.03 0.62 6.70 86.44 0.58 1.20 16 14 N -0.51 -16.13 5.11 -887.59 -4.54 -20.66 16 15 C 0.05 1.71 5.30 85.56 0.45 2.16 16 16 C 0.44 21.17 7.41 87.66 0.65 21.82 16 17 O -0.61 -34.10 13.87 -3.07 -0.04 -34.14 16 18 N -0.57 -29.96 5.29 -307.00 -1.62 -31.58 16 19 C -0.33 -19.17 9.68 84.04 0.81 -18.35 16 20 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 21 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 22 N -0.92 -50.31 13.05 21.67 0.28 -50.03 16 23 Si 0.99 43.64 29.55 68.60 2.03 45.67 16 24 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 C 0.05 1.49 5.03 86.65 0.44 1.93 16 28 H 0.06 0.43 8.08 -2.39 -0.02 0.41 16 29 H 0.06 0.38 7.87 -2.38 -0.02 0.36 16 30 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.09 0.52 7.87 -2.39 -0.02 0.50 16 32 H 0.10 0.47 7.92 -2.39 -0.02 0.46 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.42 3.48 8.11 -92.71 -0.75 2.73 16 35 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 1.45 8.08 -2.39 -0.02 1.43 16 37 H 0.08 1.11 7.80 -2.39 -0.02 1.09 16 38 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.05 1.00 7.68 -2.39 -0.02 0.98 16 40 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.06 2.04 7.99 -2.38 -0.02 2.02 16 42 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 43 H 0.40 19.63 7.90 -92.71 -0.73 18.90 16 44 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 45 H 0.07 2.72 6.43 -2.39 -0.02 2.70 16 46 H 0.03 1.00 7.92 -2.39 -0.02 0.98 16 Total: -1.00 -80.89 378.41 -1.26 -82.15 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: -0.49 Total: 29.88 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: 6.63 Total: 22.08 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -8.36 Total: -116.36 kcal Atomic # 8 Polarization: -62.35 SS G_CDS: -1.06 Total: -63.42 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -80.89 -1.26 -82.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493189115.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.663 kcal (2) G-P(sol) polarization free energy of solvation -80.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds