Wall clock time and date at job start Fri Apr 10 2020 18:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99595 * 2 1 4 4 H 1.09000 * 109.47352 * 330.00524 * 3 2 1 5 5 C 1.53001 * 109.47310 * 90.00270 * 3 2 1 6 6 C 1.50700 * 109.47459 * 210.00250 * 3 2 1 7 7 O 1.21290 * 119.99538 * 354.99743 * 6 3 2 8 8 N 1.34769 * 120.00529 * 175.00219 * 6 3 2 9 9 C 1.46503 * 120.00159 * 180.02562 * 8 6 3 10 10 C 1.53008 * 109.46986 * 179.97438 * 9 8 6 11 11 H 1.09002 * 110.62677 * 51.89411 * 10 9 8 12 12 C 1.55135 * 110.70624 * 288.59761 * 10 9 8 13 13 C 1.54903 * 101.65451 * 205.96860 * 12 10 9 14 14 N 1.47842 * 104.79653 * 37.06399 * 13 12 10 15 15 C 1.46904 * 111.00132 * 213.63866 * 14 13 12 16 16 C 1.50697 * 109.46892 * 290.84315 * 15 14 13 17 17 O 1.21291 * 120.00763 * 359.72740 * 16 15 14 18 18 N 1.34784 * 119.99774 * 179.97438 * 16 15 14 19 19 C 1.37092 * 119.99968 * 179.72830 * 18 16 15 20 20 H 1.08005 * 120.00127 * 359.97438 * 19 18 16 21 21 C 1.38955 * 120.00107 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99828 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00407 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47025 * 89.99899 * 23 21 19 25 25 H 1.48496 * 109.47352 * 210.00610 * 23 21 19 26 26 H 1.48511 * 109.46991 * 330.00512 * 23 21 19 27 27 C 1.47441 * 108.57087 * 335.91051 * 14 13 12 28 28 H 1.09003 * 109.47134 * 299.99559 * 1 2 3 29 29 H 1.09001 * 109.47533 * 60.00363 * 1 2 3 30 30 H 1.09004 * 109.46864 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47111 * 59.99691 * 5 3 2 32 32 H 1.08999 * 109.47377 * 179.97438 * 5 3 2 33 33 H 1.09008 * 109.46759 * 299.99751 * 5 3 2 34 34 H 0.97005 * 120.00106 * 359.97438 * 8 6 3 35 35 H 1.08996 * 109.47085 * 59.99933 * 9 8 6 36 36 H 1.09004 * 109.46894 * 299.99491 * 9 8 6 37 37 H 1.09003 * 110.98641 * 324.05592 * 12 10 9 38 38 H 1.08999 * 110.99268 * 87.86773 * 12 10 9 39 39 H 1.09004 * 110.37198 * 278.23798 * 13 12 10 40 40 H 1.09001 * 110.37498 * 155.90117 * 13 12 10 41 41 H 1.09001 * 109.46900 * 170.84975 * 15 14 13 42 42 H 1.08993 * 109.47169 * 50.84696 * 15 14 13 43 43 H 0.97005 * 119.99846 * 359.72750 * 18 16 15 44 44 H 0.96990 * 120.00373 * 180.02562 * 22 21 19 45 45 H 1.09001 * 109.89007 * 120.39254 * 27 14 13 46 46 H 1.09004 * 109.88998 * 241.58206 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 -0.5137 5 6 2.2176 1.7714 1.4425 6 6 3.3385 1.2641 -0.7104 7 8 3.7897 0.2046 -1.0914 8 7 4.0252 2.4042 -0.9224 9 6 5.3164 2.3639 -1.6136 10 6 5.8803 3.7820 -1.7238 11 1 5.8893 4.2685 -0.7484 12 6 5.0694 4.6166 -2.7498 13 6 6.1205 5.6591 -3.2056 14 7 7.3973 4.9150 -3.2462 15 6 8.5238 5.7817 -2.8748 16 6 8.7480 6.8056 -3.9575 17 8 8.0424 6.8097 -4.9441 18 7 9.7360 7.7139 -3.8320 19 6 9.9435 8.6419 -4.8195 20 1 9.3157 8.6449 -5.6983 21 6 10.9617 9.5786 -4.6898 22 7 11.7259 9.5746 -3.6208 23 14 11.2450 10.8426 -6.0356 24 1 10.4327 12.0539 -5.7559 25 1 12.6834 11.2093 -6.0754 26 1 10.8439 10.2693 -7.3456 27 6 7.2968 3.7598 -2.3356 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 2.8829 1.0776 1.9563 32 1 2.6613 2.7670 1.4425 33 1 1.2567 1.8014 1.9563 34 1 3.6643 3.2515 -0.6180 35 1 5.1811 1.9485 -2.6121 36 1 6.0103 1.7393 -1.0510 37 1 4.7446 3.9980 -3.5865 38 1 4.2186 5.1027 -2.2723 39 1 6.1804 6.4766 -2.4871 40 1 5.8718 6.0407 -4.1959 41 1 9.4229 5.1773 -2.7546 42 1 8.2984 6.2884 -1.9365 43 1 10.3001 7.7109 -3.0428 44 1 12.4364 10.2286 -3.5300 45 1 7.4458 2.8346 -2.8924 46 1 8.0433 3.8442 -1.5457 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493189126.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:41 Heat of formation + Delta-G solvation = -113.014750 kcal Electronic energy + Delta-G solvation = -25684.092846 eV Core-core repulsion = 21801.879227 eV Total energy + Delta-G solvation = -3882.213619 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.36681 -39.30870 -38.04245 -37.54033 -35.16817 -33.88549 -32.64476 -31.50431 -31.09421 -29.39841 -27.28966 -27.21396 -25.50457 -24.21179 -23.57570 -21.23818 -20.83460 -20.23962 -19.19799 -17.87594 -17.80278 -17.43689 -16.41310 -16.11296 -15.82888 -15.40736 -15.18068 -15.03326 -14.61007 -14.43872 -14.09136 -13.92327 -13.75089 -13.61276 -13.22086 -13.10167 -12.89661 -12.72646 -12.44712 -12.24689 -12.07403 -11.73701 -11.63319 -11.48624 -11.25985 -11.16695 -10.98346 -10.89971 -10.65914 -10.43889 -10.38536 -10.20830 -9.82822 -9.48535 -9.35405 -8.43748 -7.96140 -7.86831 -6.40626 -3.81255 2.31782 2.51108 3.18119 3.26698 3.32809 3.54358 3.92449 4.03214 4.22911 4.26281 4.39617 4.45304 4.48012 4.55672 4.76288 4.82409 4.91233 5.02280 5.10941 5.15733 5.19319 5.24238 5.24332 5.32938 5.40620 5.47850 5.57926 5.61984 5.72715 5.77106 5.81632 5.91230 6.02055 6.06954 6.23543 6.30253 6.45173 6.55940 7.16172 7.25416 7.27704 7.56141 7.92140 8.07650 8.63555 9.19662 9.56153 10.08383 10.77267 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.045100 B = 0.001889 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.696829 B =14817.306738 C =14893.061777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.069 3.931 4 H 0.087 0.913 5 C -0.171 4.171 6 C 0.512 3.488 7 O -0.519 6.519 8 N -0.726 5.726 9 C 0.133 3.867 10 C -0.124 4.124 11 H 0.082 0.918 12 C -0.125 4.125 13 C 0.053 3.947 14 N -0.505 5.505 15 C 0.041 3.959 16 C 0.444 3.556 17 O -0.577 6.577 18 N -0.567 5.567 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.050 3.950 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.400 0.600 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.041 0.959 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.048 0.952 43 H 0.391 0.609 44 H 0.271 0.729 45 H 0.081 0.919 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.885 -12.855 12.625 26.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.007 3.993 4 H 0.105 0.895 5 C -0.228 4.228 6 C 0.297 3.703 7 O -0.393 6.393 8 N -0.380 5.380 9 C 0.009 3.991 10 C -0.143 4.143 11 H 0.100 0.900 12 C -0.164 4.164 13 C -0.075 4.075 14 N -0.229 5.229 15 C -0.091 4.091 16 C 0.230 3.770 17 O -0.461 6.461 18 N -0.204 5.204 19 C -0.427 4.427 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.205 1.205 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.078 4.078 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.234 0.766 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.066 0.934 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.099 0.901 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.637 -13.861 11.199 25.785 hybrid contribution 0.141 1.712 0.948 1.961 sum -18.496 -12.149 12.146 25.243 Atomic orbital electron populations 1.22899 0.80499 1.03370 1.00081 1.88060 1.19746 1.25064 1.94927 1.21939 0.93550 0.86996 0.96777 0.89542 1.22233 1.03532 1.02055 0.95008 1.20374 0.86199 0.84134 0.79628 1.90744 1.69111 1.29734 1.49699 1.45936 1.22287 1.09279 1.60485 1.21384 0.83510 0.96469 0.97722 1.22671 0.96861 0.94997 0.99810 0.90010 1.22863 0.97552 0.97660 0.98279 1.23026 0.87567 0.94490 1.02369 1.63253 1.02997 1.07742 1.48882 1.22120 0.95066 0.95320 0.96600 1.19750 0.84159 0.84248 0.88879 1.90507 1.48911 1.74365 1.32282 1.41866 1.29300 1.28166 1.21031 1.19694 1.14821 1.07704 1.00510 0.87953 1.25252 0.96042 0.98837 0.97874 1.69609 1.20188 1.36989 1.27667 0.85863 0.77338 0.80264 0.80848 1.20485 1.20943 1.19425 1.22830 0.94351 0.96062 0.94589 0.93789 0.93732 0.89060 0.90976 0.90866 0.91135 0.76591 0.90745 0.91161 0.90381 0.91202 0.94056 0.88774 0.89378 0.93426 0.77550 0.91926 0.90106 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.82 101.05 1.09 1.26 16 2 O -0.36 -3.58 9.89 -55.09 -0.54 -4.13 16 3 C 0.07 0.53 3.13 -27.88 -0.09 0.44 16 4 H 0.09 0.44 7.79 -51.93 -0.40 0.04 16 5 C -0.17 -0.92 9.48 37.16 0.35 -0.57 16 6 C 0.51 5.40 7.18 -10.99 -0.08 5.32 16 7 O -0.52 -8.01 16.51 -14.31 -0.24 -8.25 16 8 N -0.73 -5.81 5.43 -60.29 -0.33 -6.14 16 9 C 0.13 1.24 4.97 -4.04 -0.02 1.22 16 10 C -0.12 -1.16 2.96 -88.80 -0.26 -1.42 16 11 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 12 C -0.13 -1.32 6.44 -24.60 -0.16 -1.48 16 13 C 0.05 0.79 5.75 -2.30 -0.01 0.78 16 14 N -0.50 -8.18 4.86 -232.69 -1.13 -9.31 16 15 C 0.04 0.71 5.05 -4.98 -0.03 0.69 16 16 C 0.44 10.46 7.57 -10.98 -0.08 10.38 16 17 O -0.58 -15.56 14.62 5.55 0.08 -15.47 16 18 N -0.57 -14.34 5.29 -10.96 -0.06 -14.39 16 19 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 20 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.54 13.05 55.50 0.72 -23.81 16 23 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 C 0.05 0.60 6.46 -2.84 -0.02 0.58 16 28 H 0.04 0.18 7.87 -51.93 -0.41 -0.23 16 29 H 0.04 0.21 8.09 -51.93 -0.42 -0.21 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.27 7.92 -51.93 -0.41 -0.15 16 33 H 0.07 0.29 7.87 -51.92 -0.41 -0.12 16 34 H 0.40 2.08 8.25 -40.82 -0.34 1.74 16 35 H 0.07 0.80 8.00 -51.93 -0.42 0.39 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.87 7.94 -51.93 -0.41 0.45 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.04 0.62 7.62 -51.93 -0.40 0.23 16 40 H 0.09 1.69 7.38 -51.93 -0.38 1.31 16 41 H 0.09 1.42 8.03 -51.93 -0.42 1.00 16 42 H 0.05 0.76 7.85 -51.93 -0.41 0.35 16 43 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.08 0.96 7.82 -51.93 -0.41 0.55 16 46 H 0.06 0.63 7.55 -51.93 -0.39 0.23 16 LS Contribution 379.58 15.07 5.72 5.72 Total: -1.00 -35.31 379.58 -7.90 -43.21 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -7.57 Total: 7.31 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: 0.46 Total: 9.23 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.79 Total: -53.65 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.70 Total: -27.85 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.31 -7.90 -43.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493189126.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.803 kcal (2) G-P(sol) polarization free energy of solvation -35.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds