Wall clock time and date at job start Fri Apr 10 2020 18:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00280 * 2 1 4 4 H 1.09004 * 109.46791 * 329.99885 * 3 2 1 5 5 C 1.53000 * 109.47345 * 89.99719 * 3 2 1 6 6 C 1.50697 * 109.47216 * 209.99887 * 3 2 1 7 7 O 1.21287 * 119.99829 * 354.99896 * 6 3 2 8 8 N 1.34776 * 120.00171 * 175.00040 * 6 3 2 9 9 C 1.46498 * 120.00095 * 180.02562 * 8 6 3 10 10 C 1.52998 * 109.47144 * 179.97438 * 9 8 6 11 11 H 1.09005 * 110.64311 * 303.29904 * 10 9 8 12 12 C 1.54589 * 110.72417 * 66.45122 * 10 9 8 13 13 C 1.54004 * 105.13670 * 140.31648 * 12 10 9 14 14 N 1.47893 * 107.06144 * 1.22406 * 13 12 10 15 15 C 1.46899 * 111.00398 * 214.16044 * 14 13 12 16 16 C 1.50694 * 109.47286 * 176.64056 * 15 14 13 17 17 O 1.21292 * 120.00014 * 6.12947 * 16 15 14 18 18 N 1.34777 * 119.99844 * 186.13259 * 16 15 14 19 19 C 1.37100 * 119.99992 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00025 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00059 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00036 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99887 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47162 * 270.00293 * 23 21 19 25 25 H 1.48491 * 109.47070 * 30.00471 * 23 21 19 26 26 H 1.48499 * 109.46933 * 150.00742 * 23 21 19 27 27 C 1.48540 * 105.82145 * 334.67077 * 14 13 12 28 28 H 1.09002 * 109.47459 * 300.00326 * 1 2 3 29 29 H 1.09004 * 109.46880 * 59.99850 * 1 2 3 30 30 H 1.08998 * 109.47581 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47149 * 59.99918 * 5 3 2 32 32 H 1.08997 * 109.47301 * 180.02562 * 5 3 2 33 33 H 1.09000 * 109.47108 * 300.00210 * 5 3 2 34 34 H 0.97002 * 119.99842 * 359.97438 * 8 6 3 35 35 H 1.09004 * 109.46990 * 59.99500 * 9 8 6 36 36 H 1.09003 * 109.46752 * 300.00086 * 9 8 6 37 37 H 1.08995 * 110.31051 * 21.40226 * 12 10 9 38 38 H 1.08999 * 110.31301 * 259.22551 * 12 10 9 39 39 H 1.08997 * 109.91343 * 241.86873 * 13 12 10 40 40 H 1.09002 * 110.07891 * 120.67387 * 13 12 10 41 41 H 1.08991 * 109.47011 * 56.63316 * 15 14 13 42 42 H 1.09002 * 109.46328 * 296.63348 * 15 14 13 43 43 H 0.96997 * 120.00064 * 359.97438 * 18 16 15 44 44 H 0.96996 * 120.00239 * 179.97438 * 22 21 19 45 45 H 1.08990 * 110.67087 * 157.63980 * 27 14 13 46 46 H 1.08997 * 110.66411 * 280.77449 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 3.3387 1.2638 -0.7104 7 8 3.7897 0.2043 -1.0913 8 7 4.0256 2.4038 -0.9223 9 6 5.3167 2.3634 -1.6134 10 6 5.8807 3.7814 -1.7236 11 1 5.1747 4.4372 -2.2332 12 6 6.2351 4.3393 -0.3262 13 6 7.5557 5.1068 -0.5227 14 7 7.9045 5.0103 -1.9567 15 6 9.3603 4.9448 -2.1412 16 6 9.6736 4.7645 -3.6042 17 8 8.7820 4.8085 -4.4252 18 7 10.9447 4.5542 -4.0002 19 6 11.2297 4.3897 -5.3311 20 1 10.4357 4.4281 -6.0621 21 6 12.5399 4.1724 -5.7393 22 7 12.8132 4.0151 -7.0150 23 14 13.9132 4.1052 -4.4748 24 1 14.4653 5.4686 -4.2707 25 1 13.3775 3.5905 -3.1891 26 1 14.9887 3.2032 -4.9595 27 6 7.2491 3.7721 -2.4504 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.8829 1.0775 1.9564 32 1 2.6607 2.7673 1.4425 33 1 1.2569 1.8015 1.9563 34 1 3.6647 3.2512 -0.6180 35 1 5.1814 1.9479 -2.6120 36 1 6.0104 1.7387 -1.0508 37 1 6.3737 3.5233 0.3830 38 1 5.4532 5.0147 0.0210 39 1 8.3416 4.6543 0.0819 40 1 7.4265 6.1520 -0.2414 41 1 9.7604 4.1023 -1.5773 42 1 9.8137 5.8694 -1.7839 43 1 11.6577 4.5194 -3.3436 44 1 13.7279 3.8638 -7.3001 45 1 7.1113 3.8143 -3.5307 46 1 7.8280 2.8923 -2.1694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493189128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:44 Heat of formation + Delta-G solvation = -105.339415 kcal Electronic energy + Delta-G solvation = -25979.276436 eV Core-core repulsion = 22097.395644 eV Total energy + Delta-G solvation = -3881.880791 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.32246 -39.38097 -38.08141 -37.60146 -35.16196 -33.96589 -32.68237 -31.72458 -31.38455 -29.38872 -27.29088 -27.20706 -25.62235 -24.08830 -23.57560 -21.31390 -20.47910 -20.30082 -19.36993 -18.30041 -17.75773 -17.32388 -16.57551 -16.04301 -15.54568 -15.47008 -15.37120 -15.00697 -14.86654 -14.70867 -14.30037 -13.83528 -13.59440 -13.42012 -13.21458 -13.02213 -12.86717 -12.76633 -12.51457 -12.35244 -12.19226 -11.93849 -11.79833 -11.60419 -11.35816 -11.13459 -11.11199 -10.87057 -10.65859 -10.59732 -10.39390 -9.97775 -9.76771 -9.54912 -9.29113 -8.55768 -8.19957 -8.08315 -6.31264 -3.82657 2.37657 2.56214 3.02357 3.06661 3.15037 3.58353 3.72726 3.98135 4.10180 4.27512 4.42931 4.45896 4.55363 4.65679 4.69076 4.84838 4.91030 4.94128 5.04732 5.14029 5.20824 5.22341 5.25231 5.27152 5.38563 5.57802 5.60294 5.63762 5.66026 5.70725 5.75988 5.79584 5.90697 6.01914 6.11210 6.23902 6.45925 6.59889 7.07066 7.12127 7.23558 7.57991 7.98648 8.14089 8.59597 8.94864 9.42022 9.82353 10.81784 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.025612 B = 0.002242 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.954524 B =12484.902287 C =12999.739088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.069 3.931 4 H 0.087 0.913 5 C -0.170 4.170 6 C 0.511 3.489 7 O -0.517 6.517 8 N -0.725 5.725 9 C 0.129 3.871 10 C -0.105 4.105 11 H 0.091 0.909 12 C -0.126 4.126 13 C 0.033 3.967 14 N -0.493 5.493 15 C 0.034 3.966 16 C 0.451 3.549 17 O -0.560 6.560 18 N -0.590 5.590 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.270 1.270 26 H -0.277 1.277 27 C 0.048 3.952 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.400 0.600 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.042 0.958 40 H 0.078 0.922 41 H 0.048 0.952 42 H 0.092 0.908 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.111 0.889 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.054 -0.751 20.522 28.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.008 3.992 4 H 0.104 0.896 5 C -0.228 4.228 6 C 0.295 3.705 7 O -0.392 6.392 8 N -0.379 5.379 9 C 0.005 3.995 10 C -0.125 4.125 11 H 0.109 0.891 12 C -0.164 4.164 13 C -0.095 4.095 14 N -0.217 5.217 15 C -0.098 4.098 16 C 0.237 3.763 17 O -0.442 6.442 18 N -0.230 5.230 19 C -0.433 4.433 20 H 0.138 0.862 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.196 1.196 26 H -0.202 1.202 27 C -0.080 4.080 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.234 0.766 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.110 0.890 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.129 0.871 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -20.209 -1.263 19.208 27.909 hybrid contribution 1.302 -0.072 1.529 2.009 sum -18.907 -1.335 20.736 28.093 Atomic orbital electron populations 1.22895 0.80539 1.03361 1.00038 1.88065 1.19711 1.25082 1.94919 1.21937 0.93564 0.86977 0.96751 0.89562 1.22228 1.03480 1.02046 0.95031 1.20381 0.86201 0.84188 0.79717 1.90754 1.69079 1.29732 1.49593 1.45924 1.22208 1.09239 1.60533 1.21406 0.83510 0.96793 0.97740 1.22372 0.98512 0.95052 0.96546 0.89058 1.22486 0.97499 0.99584 0.96811 1.22912 0.96156 1.00753 0.89702 1.64531 1.07766 1.36432 1.12965 1.22119 0.89373 1.01718 0.96550 1.19606 0.83376 0.84025 0.89341 1.90528 1.45357 1.54344 1.53992 1.42213 1.06816 1.65367 1.08555 1.19424 0.95535 1.46363 0.81972 0.86236 1.25043 0.97363 0.97599 0.96182 1.69618 1.20527 1.48005 1.13908 0.86672 0.82677 0.78905 0.81135 1.19597 1.19566 1.20176 1.23300 0.91599 0.90522 1.02603 0.93824 0.93745 0.89071 0.90993 0.90857 0.91186 0.76618 0.90768 0.91248 0.91363 0.91115 0.93959 0.90373 0.93355 0.88969 0.79725 0.91605 0.87098 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.27 16 2 O -0.36 -3.77 9.89 -55.09 -0.54 -4.31 16 3 C 0.07 0.56 3.13 -27.88 -0.09 0.47 16 4 H 0.09 0.47 7.79 -51.93 -0.40 0.07 16 5 C -0.17 -0.96 9.48 37.16 0.35 -0.61 16 6 C 0.51 5.79 7.18 -10.99 -0.08 5.71 16 7 O -0.52 -8.56 16.51 -14.31 -0.24 -8.80 16 8 N -0.73 -6.40 5.36 -60.29 -0.32 -6.72 16 9 C 0.13 1.41 5.00 -4.04 -0.02 1.39 16 10 C -0.11 -1.14 3.13 -88.76 -0.28 -1.42 16 11 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 12 C -0.13 -1.13 6.20 -25.37 -0.16 -1.29 16 13 C 0.03 0.37 6.70 -2.75 -0.02 0.35 16 14 N -0.49 -7.61 5.11 -231.89 -1.18 -8.80 16 15 C 0.03 0.57 5.30 -4.98 -0.03 0.54 16 16 C 0.45 10.14 7.41 -10.99 -0.08 10.06 16 17 O -0.56 -14.68 13.87 5.55 0.08 -14.60 16 18 N -0.59 -14.01 5.09 -10.97 -0.06 -14.07 16 19 C -0.30 -8.58 10.16 -14.93 -0.15 -8.74 16 20 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -25.76 13.96 55.50 0.77 -24.99 16 23 Si 0.88 19.41 27.74 -169.99 -4.71 14.69 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 C 0.05 0.72 5.03 -1.89 -0.01 0.71 16 28 H 0.04 0.19 7.87 -51.93 -0.41 -0.22 16 29 H 0.04 0.23 8.09 -51.93 -0.42 -0.19 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.27 7.93 -51.93 -0.41 -0.14 16 33 H 0.07 0.30 7.87 -51.93 -0.41 -0.11 16 34 H 0.40 2.26 8.11 -40.82 -0.33 1.93 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 37 H 0.07 0.58 7.80 -51.93 -0.41 0.17 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.04 0.45 7.68 -51.93 -0.40 0.05 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.72 7.98 -51.93 -0.41 0.30 16 42 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 43 H 0.37 7.74 5.76 -40.82 -0.24 7.50 16 44 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.11 2.07 6.43 -51.93 -0.33 1.74 16 46 H 0.04 0.64 7.92 -51.93 -0.41 0.23 16 LS Contribution 375.29 15.07 5.66 5.66 Total: -1.00 -36.22 375.29 -7.63 -43.85 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -7.52 Total: 8.60 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 0.44 Total: 9.50 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: -0.79 Total: -54.58 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.70 Total: -27.71 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.71 Total: 14.69 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.22 -7.63 -43.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493189128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.485 kcal (2) G-P(sol) polarization free energy of solvation -36.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds