Wall clock time and date at job start Fri Apr 10 2020 18:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00280 * 2 1 4 4 H 1.09004 * 109.46791 * 329.99885 * 3 2 1 5 5 C 1.53000 * 109.47345 * 89.99719 * 3 2 1 6 6 C 1.50697 * 109.47216 * 209.99887 * 3 2 1 7 7 O 1.21287 * 119.99829 * 354.99896 * 6 3 2 8 8 N 1.34776 * 120.00171 * 175.00040 * 6 3 2 9 9 C 1.46498 * 120.00095 * 180.02562 * 8 6 3 10 10 C 1.52998 * 109.47144 * 179.97438 * 9 8 6 11 11 H 1.09005 * 110.64311 * 303.29904 * 10 9 8 12 12 C 1.54589 * 110.72417 * 66.45122 * 10 9 8 13 13 C 1.54004 * 105.13670 * 140.31648 * 12 10 9 14 14 N 1.47893 * 107.06144 * 1.22406 * 13 12 10 15 15 C 1.46899 * 111.00398 * 214.16044 * 14 13 12 16 16 C 1.50694 * 109.47286 * 176.64056 * 15 14 13 17 17 O 1.21292 * 120.00014 * 6.12947 * 16 15 14 18 18 N 1.34777 * 119.99844 * 186.13259 * 16 15 14 19 19 C 1.37100 * 119.99992 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00025 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00059 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00036 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99887 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47162 * 270.00293 * 23 21 19 25 25 H 1.48491 * 109.47070 * 30.00471 * 23 21 19 26 26 H 1.48499 * 109.46933 * 150.00742 * 23 21 19 27 27 C 1.48540 * 105.82145 * 334.67077 * 14 13 12 28 28 H 1.09002 * 109.47459 * 300.00326 * 1 2 3 29 29 H 1.09004 * 109.46880 * 59.99850 * 1 2 3 30 30 H 1.08998 * 109.47581 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47149 * 59.99918 * 5 3 2 32 32 H 1.08997 * 109.47301 * 180.02562 * 5 3 2 33 33 H 1.09000 * 109.47108 * 300.00210 * 5 3 2 34 34 H 0.97002 * 119.99842 * 359.97438 * 8 6 3 35 35 H 1.09004 * 109.46990 * 59.99500 * 9 8 6 36 36 H 1.09003 * 109.46752 * 300.00086 * 9 8 6 37 37 H 1.08995 * 110.31051 * 21.40226 * 12 10 9 38 38 H 1.08999 * 110.31301 * 259.22551 * 12 10 9 39 39 H 1.08997 * 109.91343 * 241.86873 * 13 12 10 40 40 H 1.09002 * 110.07891 * 120.67387 * 13 12 10 41 41 H 1.08991 * 109.47011 * 56.63316 * 15 14 13 42 42 H 1.09002 * 109.46328 * 296.63348 * 15 14 13 43 43 H 0.96997 * 120.00064 * 359.97438 * 18 16 15 44 44 H 0.96996 * 120.00239 * 179.97438 * 22 21 19 45 45 H 1.08990 * 110.67087 * 157.63980 * 27 14 13 46 46 H 1.08997 * 110.66411 * 280.77449 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 3.3387 1.2638 -0.7104 7 8 3.7897 0.2043 -1.0913 8 7 4.0256 2.4038 -0.9223 9 6 5.3167 2.3634 -1.6134 10 6 5.8807 3.7814 -1.7236 11 1 5.1747 4.4372 -2.2332 12 6 6.2351 4.3393 -0.3262 13 6 7.5557 5.1068 -0.5227 14 7 7.9045 5.0103 -1.9567 15 6 9.3603 4.9448 -2.1412 16 6 9.6736 4.7645 -3.6042 17 8 8.7820 4.8085 -4.4252 18 7 10.9447 4.5542 -4.0002 19 6 11.2297 4.3897 -5.3311 20 1 10.4357 4.4281 -6.0621 21 6 12.5399 4.1724 -5.7393 22 7 12.8132 4.0151 -7.0150 23 14 13.9132 4.1052 -4.4748 24 1 14.4653 5.4686 -4.2707 25 1 13.3775 3.5905 -3.1891 26 1 14.9887 3.2032 -4.9595 27 6 7.2491 3.7721 -2.4504 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.8829 1.0775 1.9564 32 1 2.6607 2.7673 1.4425 33 1 1.2569 1.8015 1.9563 34 1 3.6647 3.2512 -0.6180 35 1 5.1814 1.9479 -2.6120 36 1 6.0104 1.7387 -1.0508 37 1 6.3737 3.5233 0.3830 38 1 5.4532 5.0147 0.0210 39 1 8.3416 4.6543 0.0819 40 1 7.4265 6.1520 -0.2414 41 1 9.7604 4.1023 -1.5773 42 1 9.8137 5.8694 -1.7839 43 1 11.6577 4.5194 -3.3436 44 1 13.7279 3.8638 -7.3001 45 1 7.1113 3.8143 -3.5307 46 1 7.8280 2.8923 -2.1694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493189128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:44 Heat of formation + Delta-G solvation = -136.086239 kcal Electronic energy + Delta-G solvation = -25980.609718 eV Core-core repulsion = 22097.395644 eV Total energy + Delta-G solvation = -3883.214074 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.21700 -40.69520 -39.37573 -38.52530 -36.27572 -35.87900 -33.83114 -33.50897 -32.22176 -30.31680 -28.67612 -27.69440 -26.83496 -25.54502 -24.39844 -22.38186 -21.39514 -21.26603 -21.16193 -20.19716 -18.53505 -18.02919 -17.86860 -17.13216 -16.85622 -16.61795 -16.28280 -16.26460 -16.13365 -15.70192 -15.40144 -15.07762 -14.82140 -14.57369 -14.31168 -14.24568 -14.11486 -13.83617 -13.50211 -13.29813 -13.22699 -12.96497 -12.88742 -12.73946 -12.45156 -12.37935 -12.15041 -12.02898 -11.99158 -11.90085 -11.49784 -11.47550 -11.07468 -10.54219 -10.35071 -10.24795 -10.18751 -9.31612 -8.42229 -6.02947 1.28735 1.34282 1.43085 1.52433 1.82375 1.94159 2.21815 2.68374 3.00190 3.13554 3.19584 3.55960 3.71117 3.77684 3.87998 3.93575 4.05044 4.15805 4.29917 4.33573 4.34535 4.41371 4.45710 4.55167 4.57147 4.67782 4.70319 4.76927 4.81871 4.84059 4.86652 4.99585 5.11419 5.21641 5.24242 5.27737 5.38375 5.51886 5.87672 5.94022 6.06560 6.08983 6.52973 6.58738 6.87489 7.19389 7.38587 7.95765 8.75416 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.025612 B = 0.002242 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.954524 B =12484.902287 C =12999.739088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.401 6.401 3 C 0.070 3.930 4 H 0.118 0.882 5 C -0.164 4.164 6 C 0.505 3.495 7 O -0.581 6.581 8 N -0.705 5.705 9 C 0.136 3.864 10 C -0.089 4.089 11 H 0.096 0.904 12 C -0.115 4.115 13 C 0.031 3.969 14 N -0.515 5.515 15 C 0.045 3.955 16 C 0.448 3.552 17 O -0.605 6.605 18 N -0.592 5.592 19 C -0.327 4.327 20 H 0.055 0.945 21 C -0.017 4.017 22 N -0.934 5.934 23 Si 0.965 3.035 24 H -0.255 1.255 25 H -0.233 1.233 26 H -0.276 1.276 27 C 0.044 3.956 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.420 0.580 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.056 0.944 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.122 0.878 43 H 0.389 0.611 44 H 0.279 0.721 45 H 0.062 0.938 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.399 0.800 25.295 32.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.009 3.991 4 H 0.136 0.864 5 C -0.222 4.222 6 C 0.291 3.709 7 O -0.459 6.459 8 N -0.359 5.359 9 C 0.012 3.988 10 C -0.108 4.108 11 H 0.114 0.886 12 C -0.153 4.153 13 C -0.096 4.096 14 N -0.240 5.240 15 C -0.086 4.086 16 C 0.236 3.764 17 O -0.489 6.489 18 N -0.234 5.234 19 C -0.456 4.456 20 H 0.073 0.927 21 C -0.215 4.215 22 N -0.575 5.575 23 Si 0.785 3.215 24 H -0.179 1.179 25 H -0.157 1.157 26 H -0.201 1.201 27 C -0.084 4.084 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.258 0.742 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.122 0.878 39 H 0.074 0.926 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.140 0.860 43 H 0.224 0.776 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -20.595 0.345 24.030 31.650 hybrid contribution 1.263 -0.534 -0.073 1.373 sum -19.333 -0.189 23.958 30.786 Atomic orbital electron populations 1.23086 0.78606 1.04096 1.01556 1.88015 1.21978 1.26774 1.95210 1.22109 0.91804 0.86952 0.98195 0.86444 1.22234 1.04363 1.02644 0.92930 1.21185 0.87268 0.83547 0.78858 1.90724 1.70794 1.32063 1.52358 1.45704 1.21091 1.09787 1.59316 1.21161 0.84430 0.96692 0.96529 1.22174 0.96031 0.94889 0.97723 0.88606 1.22496 0.97452 1.00241 0.95106 1.23059 0.97495 1.02301 0.86724 1.64487 1.06853 1.36258 1.16360 1.22066 0.90866 1.04217 0.91451 1.20896 0.82245 0.81262 0.91983 1.90524 1.46693 1.55397 1.56318 1.42047 1.08071 1.66239 1.07055 1.18988 0.94724 1.48559 0.83318 0.92678 1.26129 1.00319 0.96098 0.98986 1.69804 1.21716 1.49048 1.16946 0.85358 0.77576 0.79730 0.78809 1.17937 1.15659 1.20078 1.23125 0.94362 0.90532 1.00385 0.91532 0.92869 0.88943 0.92941 0.88347 0.89255 0.74234 0.93373 0.92175 0.90220 0.87804 0.92573 0.88716 0.90680 0.85966 0.77562 0.91160 0.91935 0.94757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.82 113.37 1.23 1.46 16 2 O -0.40 -8.08 9.89 -129.99 -1.28 -9.36 16 3 C 0.07 1.00 3.13 29.85 0.09 1.09 16 4 H 0.12 0.89 7.79 -2.38 -0.02 0.87 16 5 C -0.16 -1.34 9.48 71.98 0.68 -0.66 16 6 C 0.50 11.14 7.18 87.66 0.63 11.77 16 7 O -0.58 -19.98 16.51 15.94 0.26 -19.71 16 8 N -0.70 -11.28 5.36 -463.06 -2.48 -13.76 16 9 C 0.14 2.95 5.00 86.38 0.43 3.39 16 10 C -0.09 -1.80 3.13 -9.59 -0.03 -1.83 16 11 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 12 C -0.12 -1.59 6.20 31.47 0.20 -1.39 16 13 C 0.03 0.57 6.70 86.45 0.58 1.15 16 14 N -0.51 -14.98 5.11 -887.58 -4.54 -19.52 16 15 C 0.05 1.41 5.30 85.56 0.45 1.86 16 16 C 0.45 20.46 7.41 87.65 0.65 21.11 16 17 O -0.61 -33.59 13.87 -3.07 -0.04 -33.63 16 18 N -0.59 -28.29 5.09 -306.99 -1.56 -29.86 16 19 C -0.33 -19.37 10.16 84.04 0.85 -18.51 16 20 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 21 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 22 N -0.93 -57.02 13.96 21.66 0.30 -56.72 16 23 Si 0.97 39.28 27.74 68.60 1.90 41.18 16 24 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 25 H -0.23 -8.02 6.52 99.48 0.65 -7.38 16 26 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16 27 C 0.04 1.37 5.03 86.65 0.44 1.80 16 28 H 0.07 0.38 7.87 -2.39 -0.02 0.36 16 29 H 0.05 0.45 8.09 -2.39 -0.02 0.43 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.10 0.29 7.93 -2.39 -0.02 0.27 16 33 H 0.09 0.41 7.87 -2.39 -0.02 0.39 16 34 H 0.42 3.29 8.11 -92.71 -0.75 2.54 16 35 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.06 1.44 8.08 -2.39 -0.02 1.42 16 37 H 0.08 0.99 7.80 -2.39 -0.02 0.97 16 38 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 0.90 7.68 -2.39 -0.02 0.89 16 40 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.08 1.96 7.98 -2.39 -0.02 1.94 16 42 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 43 H 0.39 15.40 5.76 -92.71 -0.53 14.86 16 44 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 45 H 0.06 2.52 6.43 -2.39 -0.02 2.51 16 46 H 0.03 1.07 7.92 -2.39 -0.02 1.06 16 Total: -1.00 -89.23 375.29 -1.13 -90.35 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: -0.36 Total: 30.26 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 6.67 Total: 20.77 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -8.28 Total: -119.86 kcal Atomic # 8 Polarization: -61.64 SS G_CDS: -1.06 Total: -62.71 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 1.90 Total: 41.18 kcal Total: -89.23 -1.13 -90.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493189128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.733 kcal (2) G-P(sol) polarization free energy of solvation -89.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds