Wall clock time and date at job start Fri Apr 10 2020 18:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47021 * 2 1 4 4 C 1.34773 * 120.00097 * 270.00239 * 3 2 1 5 5 O 1.21284 * 120.00265 * 180.02562 * 4 3 2 6 6 C 1.50705 * 120.00085 * 359.97438 * 4 3 2 7 7 O 1.42897 * 109.47038 * 180.02562 * 6 4 3 8 8 C 1.42902 * 113.99945 * 180.02562 * 7 6 4 9 9 C 1.46496 * 119.99714 * 89.99829 * 3 2 1 10 10 H 1.08996 * 110.64985 * 358.30524 * 9 3 2 11 11 C 1.54601 * 110.72214 * 121.45441 * 9 3 2 12 12 C 1.53991 * 105.14157 * 140.49559 * 11 9 3 13 13 N 1.47902 * 107.05702 * 1.22515 * 12 11 9 14 14 C 1.46902 * 111.00151 * 214.15747 * 13 12 11 15 15 C 1.50697 * 109.47354 * 176.63738 * 14 13 12 16 16 O 1.21292 * 120.00157 * 6.13306 * 15 14 13 17 17 N 1.34783 * 119.99957 * 186.13847 * 15 14 13 18 18 C 1.37102 * 119.99828 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00040 * 359.97438 * 18 17 15 20 20 C 1.38945 * 119.99993 * 180.27518 * 18 17 15 21 21 N 1.31413 * 119.99780 * 359.72147 * 20 18 17 22 22 Si 1.86797 * 120.00162 * 179.72771 * 20 18 17 23 23 H 1.48496 * 109.46981 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47427 * 119.99597 * 22 20 18 25 25 H 1.48494 * 109.47128 * 239.99804 * 22 20 18 26 26 C 1.48537 * 105.81964 * 334.67101 * 13 12 11 27 27 H 1.09002 * 109.47156 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47503 * 299.99883 * 1 2 3 29 29 H 1.09002 * 109.47252 * 60.00157 * 1 2 3 30 30 H 1.09002 * 109.46812 * 240.00489 * 2 1 3 31 31 H 1.08996 * 109.46889 * 120.00460 * 2 1 3 32 32 H 1.08993 * 109.46890 * 300.00034 * 6 4 3 33 33 H 1.09002 * 109.46785 * 60.00677 * 6 4 3 34 34 H 1.08998 * 109.46974 * 180.02562 * 8 7 6 35 35 H 1.08999 * 109.46968 * 299.99760 * 8 7 6 36 36 H 1.08996 * 109.46973 * 60.00038 * 8 7 6 37 37 H 1.09005 * 110.30958 * 21.57596 * 11 9 3 38 38 H 1.08999 * 110.39037 * 259.45220 * 11 9 3 39 39 H 1.09002 * 109.91919 * 241.87449 * 12 11 9 40 40 H 1.08997 * 109.92190 * 120.57575 * 12 11 9 41 41 H 1.09003 * 109.46711 * 56.64024 * 14 13 12 42 42 H 1.08995 * 109.47222 * 296.64290 * 14 13 12 43 43 H 0.96991 * 119.99799 * 359.97438 * 17 15 14 44 44 H 0.97002 * 119.99956 * 180.02562 * 21 20 18 45 45 H 1.08995 * 110.66653 * 157.64652 * 26 13 12 46 46 H 1.09002 * 110.66332 * 280.77146 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.6476 3.1599 -1.1672 6 6 1.9922 1.3060 -2.4723 7 8 2.3022 2.1814 -3.5584 8 6 2.0973 1.6021 -4.8486 9 6 2.2624 2.0718 1.2687 10 1 2.0037 1.4306 2.1113 11 6 3.7344 2.5346 1.3653 12 6 3.6762 3.9263 2.0220 13 7 2.2533 4.2128 2.3060 14 6 1.9637 5.6448 2.1521 15 6 0.4918 5.8857 2.3679 16 8 -0.2242 4.9775 2.7333 17 7 -0.0289 7.1105 2.1548 18 6 -1.3681 7.3295 2.3506 19 1 -2.0058 6.5206 2.6752 20 6 -1.9060 8.5907 2.1254 21 7 -1.1301 9.5748 1.7300 22 14 -3.7319 8.8873 2.3849 23 1 -4.3801 7.6267 2.8274 24 1 -3.9211 9.9324 3.4227 25 1 -4.3461 9.3383 1.1104 26 6 1.4753 3.4048 1.3323 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 2.6228 0.4189 -2.5299 33 1 0.9443 1.0116 -2.5302 34 1 2.3552 2.3292 -5.6185 35 1 2.7294 0.7206 -4.9555 36 1 1.0515 1.3144 -4.9557 37 1 4.1753 2.6037 0.3708 38 1 4.3087 1.8471 1.9862 39 1 4.0769 4.6759 1.3397 40 1 4.2467 3.9228 2.9507 41 1 2.2409 5.9656 1.1479 42 1 2.5362 6.2122 2.8857 43 1 0.5437 7.8368 1.8629 44 1 -1.5055 10.4554 1.5731 45 1 0.4616 3.2360 1.6954 46 1 1.4596 3.8892 0.3559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494870987.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:11 Heat of formation + Delta-G solvation = -92.399678 kcal Electronic energy + Delta-G solvation = -27358.141502 eV Core-core repulsion = 23476.821820 eV Total energy + Delta-G solvation = -3881.319682 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.60140 -38.71343 -37.82162 -36.88091 -35.89563 -33.83156 -31.97328 -31.10118 -30.13695 -29.33058 -27.85529 -26.57630 -25.81244 -24.08076 -23.54964 -21.67993 -20.80647 -19.10548 -18.98000 -17.77285 -17.40658 -17.06666 -16.46849 -15.95633 -15.77375 -15.22142 -14.88122 -14.80254 -14.40920 -14.24211 -14.13376 -13.90731 -13.49926 -13.37371 -13.16400 -13.06919 -12.69415 -12.36410 -12.26804 -11.94347 -11.81148 -11.65218 -11.48033 -11.42916 -11.31945 -11.11525 -11.09184 -10.69704 -10.66715 -10.29149 -10.15466 -10.04482 -9.51796 -9.41312 -8.73193 -8.28258 -7.90403 -7.78433 -6.34017 -3.74490 2.49668 2.57291 3.21109 3.30761 3.38087 3.64125 4.00926 4.18124 4.33118 4.47289 4.57059 4.78512 4.79378 4.82704 4.89897 5.01965 5.03844 5.07396 5.11743 5.19182 5.28370 5.34261 5.39326 5.44257 5.52117 5.54138 5.67900 5.93982 5.99050 6.00446 6.02497 6.06468 6.10558 6.32367 6.40766 6.57639 6.67008 6.74677 7.27672 7.33758 7.40274 7.62283 8.12861 8.14772 8.70559 9.25885 9.63529 10.15585 10.84075 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.013321 B = 0.003482 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.460579 B = 8039.672458 C = 8689.710656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.104 3.896 3 N -0.605 5.605 4 C 0.512 3.488 5 O -0.504 6.504 6 C 0.043 3.957 7 O -0.365 6.365 8 C 0.030 3.970 9 C 0.144 3.856 10 H 0.102 0.898 11 C -0.136 4.136 12 C 0.040 3.960 13 N -0.491 5.491 14 C 0.038 3.962 15 C 0.447 3.553 16 O -0.581 6.581 17 N -0.565 5.565 18 C -0.296 4.296 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.028 3.972 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.042 0.958 36 H 0.043 0.957 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.075 0.925 41 H 0.050 0.950 42 H 0.089 0.911 43 H 0.392 0.608 44 H 0.270 0.730 45 H 0.102 0.898 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.223 -20.499 -8.292 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.019 4.019 3 N -0.341 5.341 4 C 0.299 3.701 5 O -0.378 6.378 6 C -0.036 4.036 7 O -0.283 6.283 8 C -0.066 4.066 9 C 0.041 3.959 10 H 0.120 0.880 11 C -0.175 4.175 12 C -0.089 4.089 13 N -0.215 5.215 14 C -0.094 4.094 15 C 0.232 3.768 16 O -0.465 6.465 17 N -0.202 5.202 18 C -0.426 4.426 19 H 0.121 0.879 20 C -0.181 4.181 21 N -0.544 5.544 22 Si 0.756 3.244 23 H -0.193 1.193 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.100 4.100 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.093 0.907 41 H 0.068 0.932 42 H 0.108 0.892 43 H 0.225 0.775 44 H 0.080 0.920 45 H 0.120 0.880 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.843 -20.217 -7.531 23.316 hybrid contribution -0.477 0.625 -1.027 1.294 sum 8.366 -19.592 -8.559 22.958 Atomic orbital electron populations 1.22271 0.95427 1.02350 1.03459 1.21643 0.94924 0.82119 1.03230 1.47936 1.66453 1.14160 1.05531 1.20177 0.78349 0.86925 0.84659 1.90734 1.43151 1.17018 1.86872 1.22353 1.01271 0.93122 0.86900 1.88044 1.88200 1.38718 1.13322 1.22833 0.99970 0.99145 0.84691 1.22075 0.95190 0.94592 0.84046 0.87995 1.22701 0.96438 0.96820 1.01550 1.22796 0.91103 0.95796 0.99183 1.64537 1.03221 1.05523 1.48206 1.22066 0.96836 0.89752 1.00736 1.19732 0.88655 0.83961 0.84447 1.90461 1.61429 1.43098 1.51508 1.41869 1.09625 1.09229 1.59465 1.19737 0.84083 0.96409 1.42378 0.87933 1.25255 1.00253 0.95229 0.97313 1.69631 1.35928 1.02124 1.46671 0.85811 0.82306 0.78470 0.77805 1.19274 1.20778 1.20833 1.23666 0.99040 0.91653 0.95652 0.91378 0.91305 0.92431 0.90623 0.89799 0.90583 0.90289 0.89059 0.93976 0.93795 0.90491 0.91387 0.93638 0.90650 0.93182 0.89246 0.77474 0.91995 0.87972 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 10.24 37.16 0.38 -1.00 16 2 C 0.10 0.77 5.91 -4.04 -0.02 0.74 16 3 N -0.61 -7.07 2.54 -164.00 -0.42 -7.49 16 4 C 0.51 7.11 6.88 -10.98 -0.08 7.04 16 5 O -0.50 -9.33 12.84 -14.36 -0.18 -9.52 16 6 C 0.04 0.45 4.97 36.01 0.18 0.63 16 7 O -0.37 -4.68 10.24 -55.14 -0.56 -5.24 16 8 C 0.03 0.24 11.01 101.05 1.11 1.35 16 9 C 0.14 1.99 3.54 -66.07 -0.23 1.75 16 10 H 0.10 1.26 7.88 -51.93 -0.41 0.85 16 11 C -0.14 -1.81 6.16 -25.37 -0.16 -1.96 16 12 C 0.04 0.60 6.70 -2.76 -0.02 0.58 16 13 N -0.49 -9.18 5.11 -231.90 -1.18 -10.36 16 14 C 0.04 0.77 5.30 -4.98 -0.03 0.74 16 15 C 0.45 11.28 7.42 -10.98 -0.08 11.19 16 16 O -0.58 -16.22 13.87 5.55 0.08 -16.14 16 17 N -0.57 -15.19 5.29 -10.96 -0.06 -15.25 16 18 C -0.30 -8.59 9.68 -14.93 -0.14 -8.73 16 19 H 0.10 3.10 7.16 -52.49 -0.38 2.72 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -25.51 13.05 55.50 0.72 -24.79 16 22 Si 0.93 21.69 29.55 -169.99 -5.02 16.67 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.03 0.52 4.93 -1.90 -0.01 0.52 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.49 7.22 -51.93 -0.38 0.11 16 30 H 0.08 0.38 6.44 -51.93 -0.33 0.05 16 31 H 0.08 0.50 7.96 -51.93 -0.41 0.09 16 32 H 0.08 0.54 7.40 -51.93 -0.38 0.16 16 33 H 0.08 0.66 7.19 -51.93 -0.37 0.29 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 1.12 6.32 -51.93 -0.33 0.79 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.71 7.68 -51.93 -0.40 0.31 16 40 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 1.01 7.98 -51.93 -0.41 0.59 16 42 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 43 H 0.39 10.19 7.90 -40.82 -0.32 9.87 16 44 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.10 2.18 6.43 -51.93 -0.33 1.85 16 46 H 0.06 1.34 5.65 -51.93 -0.29 1.04 16 LS Contribution 368.70 15.07 5.56 5.56 Total: -1.00 -35.79 368.70 -7.54 -43.34 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -7.27 Total: 9.88 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: 0.81 Total: 13.34 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.94 Total: -57.89 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.67 Total: -30.90 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.79 -7.54 -43.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494870987.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.064 kcal (2) G-P(sol) polarization free energy of solvation -35.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds