Wall clock time and date at job start Fri Apr 10 2020 18:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47021 * 2 1 4 4 C 1.34773 * 120.00097 * 270.00239 * 3 2 1 5 5 O 1.21284 * 120.00265 * 180.02562 * 4 3 2 6 6 C 1.50705 * 120.00085 * 359.97438 * 4 3 2 7 7 O 1.42897 * 109.47038 * 180.02562 * 6 4 3 8 8 C 1.42902 * 113.99945 * 180.02562 * 7 6 4 9 9 C 1.46496 * 119.99714 * 89.99829 * 3 2 1 10 10 H 1.08996 * 110.64985 * 358.30524 * 9 3 2 11 11 C 1.54601 * 110.72214 * 121.45441 * 9 3 2 12 12 C 1.53991 * 105.14157 * 140.49559 * 11 9 3 13 13 N 1.47902 * 107.05702 * 1.22515 * 12 11 9 14 14 C 1.46902 * 111.00151 * 214.15747 * 13 12 11 15 15 C 1.50697 * 109.47354 * 176.63738 * 14 13 12 16 16 O 1.21292 * 120.00157 * 6.13306 * 15 14 13 17 17 N 1.34783 * 119.99957 * 186.13847 * 15 14 13 18 18 C 1.37102 * 119.99828 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00040 * 359.97438 * 18 17 15 20 20 C 1.38945 * 119.99993 * 180.27518 * 18 17 15 21 21 N 1.31413 * 119.99780 * 359.72147 * 20 18 17 22 22 Si 1.86797 * 120.00162 * 179.72771 * 20 18 17 23 23 H 1.48496 * 109.46981 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47427 * 119.99597 * 22 20 18 25 25 H 1.48494 * 109.47128 * 239.99804 * 22 20 18 26 26 C 1.48537 * 105.81964 * 334.67101 * 13 12 11 27 27 H 1.09002 * 109.47156 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47503 * 299.99883 * 1 2 3 29 29 H 1.09002 * 109.47252 * 60.00157 * 1 2 3 30 30 H 1.09002 * 109.46812 * 240.00489 * 2 1 3 31 31 H 1.08996 * 109.46889 * 120.00460 * 2 1 3 32 32 H 1.08993 * 109.46890 * 300.00034 * 6 4 3 33 33 H 1.09002 * 109.46785 * 60.00677 * 6 4 3 34 34 H 1.08998 * 109.46974 * 180.02562 * 8 7 6 35 35 H 1.08999 * 109.46968 * 299.99760 * 8 7 6 36 36 H 1.08996 * 109.46973 * 60.00038 * 8 7 6 37 37 H 1.09005 * 110.30958 * 21.57596 * 11 9 3 38 38 H 1.08999 * 110.39037 * 259.45220 * 11 9 3 39 39 H 1.09002 * 109.91919 * 241.87449 * 12 11 9 40 40 H 1.08997 * 109.92190 * 120.57575 * 12 11 9 41 41 H 1.09003 * 109.46711 * 56.64024 * 14 13 12 42 42 H 1.08995 * 109.47222 * 296.64290 * 14 13 12 43 43 H 0.96991 * 119.99799 * 359.97438 * 17 15 14 44 44 H 0.97002 * 119.99956 * 180.02562 * 21 20 18 45 45 H 1.08995 * 110.66653 * 157.64652 * 26 13 12 46 46 H 1.09002 * 110.66332 * 280.77146 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.6476 3.1599 -1.1672 6 6 1.9922 1.3060 -2.4723 7 8 2.3022 2.1814 -3.5584 8 6 2.0973 1.6021 -4.8486 9 6 2.2624 2.0718 1.2687 10 1 2.0037 1.4306 2.1113 11 6 3.7344 2.5346 1.3653 12 6 3.6762 3.9263 2.0220 13 7 2.2533 4.2128 2.3060 14 6 1.9637 5.6448 2.1521 15 6 0.4918 5.8857 2.3679 16 8 -0.2242 4.9775 2.7333 17 7 -0.0289 7.1105 2.1548 18 6 -1.3681 7.3295 2.3506 19 1 -2.0058 6.5206 2.6752 20 6 -1.9060 8.5907 2.1254 21 7 -1.1301 9.5748 1.7300 22 14 -3.7319 8.8873 2.3849 23 1 -4.3801 7.6267 2.8274 24 1 -3.9211 9.9324 3.4227 25 1 -4.3461 9.3383 1.1104 26 6 1.4753 3.4048 1.3323 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 2.6228 0.4189 -2.5299 33 1 0.9443 1.0116 -2.5302 34 1 2.3552 2.3292 -5.6185 35 1 2.7294 0.7206 -4.9555 36 1 1.0515 1.3144 -4.9557 37 1 4.1753 2.6037 0.3708 38 1 4.3087 1.8471 1.9862 39 1 4.0769 4.6759 1.3397 40 1 4.2467 3.9228 2.9507 41 1 2.2409 5.9656 1.1479 42 1 2.5362 6.2122 2.8857 43 1 0.5437 7.8368 1.8629 44 1 -1.5055 10.4554 1.5731 45 1 0.4616 3.2360 1.6954 46 1 1.4596 3.8892 0.3559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494870987.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:11 Heat of formation + Delta-G solvation = -120.349556 kcal Electronic energy + Delta-G solvation = -27359.353500 eV Core-core repulsion = 23476.821820 eV Total energy + Delta-G solvation = -3882.531680 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.68425 -40.36885 -39.05213 -38.13032 -36.89915 -35.95619 -33.45815 -33.00874 -31.04673 -30.33316 -29.06477 -28.05216 -26.78007 -25.92442 -24.27384 -22.85860 -22.13370 -21.04995 -20.04265 -19.87748 -18.38844 -18.00222 -17.67737 -17.26098 -16.89822 -16.69243 -16.43901 -16.04391 -15.83832 -15.73069 -15.51777 -14.94336 -14.72876 -14.71578 -14.41406 -14.11722 -13.83844 -13.69752 -13.59164 -13.27207 -13.14755 -12.94995 -12.75336 -12.60539 -12.43537 -12.40388 -12.32336 -12.25643 -12.11677 -12.02083 -11.73249 -11.50192 -10.77102 -10.59051 -10.31279 -10.04967 -9.70898 -9.37315 -8.49109 -5.98690 1.34412 1.38650 1.50562 1.54100 1.68629 1.99587 2.26448 2.77760 2.98165 3.16825 3.37728 3.53169 3.66725 3.78956 3.95043 4.10891 4.15496 4.19586 4.24053 4.33274 4.35719 4.38908 4.45706 4.47240 4.50506 4.54426 4.59809 4.72720 4.81020 4.84394 4.88213 4.93805 5.01088 5.10164 5.16522 5.37398 5.37599 5.54740 5.80384 5.92672 6.02599 6.05648 6.39233 6.56202 7.08638 7.14715 7.50731 8.05956 8.69067 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.013321 B = 0.003482 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.460579 B = 8039.672458 C = 8689.710656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.099 3.901 3 N -0.600 5.600 4 C 0.500 3.500 5 O -0.563 6.563 6 C 0.047 3.953 7 O -0.410 6.410 8 C 0.025 3.975 9 C 0.152 3.848 10 H 0.122 0.878 11 C -0.125 4.125 12 C 0.038 3.962 13 N -0.501 5.501 14 C 0.050 3.950 15 C 0.442 3.558 16 O -0.611 6.611 17 N -0.574 5.574 18 C -0.333 4.333 19 H 0.080 0.920 20 C -0.016 4.016 21 N -0.923 5.923 22 Si 0.997 3.003 23 H -0.271 1.271 24 H -0.268 1.268 25 H -0.271 1.271 26 C 0.033 3.967 27 H 0.096 0.904 28 H 0.039 0.961 29 H 0.046 0.954 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.104 0.896 39 H 0.036 0.964 40 H 0.100 0.900 41 H 0.049 0.951 42 H 0.113 0.887 43 H 0.394 0.606 44 H 0.278 0.722 45 H 0.064 0.936 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.826 -22.765 -8.505 26.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.022 4.022 3 N -0.334 5.334 4 C 0.289 3.711 5 O -0.441 6.441 6 C -0.032 4.032 7 O -0.329 6.329 8 C -0.071 4.071 9 C 0.048 3.952 10 H 0.140 0.860 11 C -0.164 4.164 12 C -0.090 4.090 13 N -0.225 5.225 14 C -0.082 4.082 15 C 0.230 3.770 16 O -0.497 6.497 17 N -0.212 5.212 18 C -0.463 4.463 19 H 0.098 0.902 20 C -0.215 4.215 21 N -0.564 5.564 22 Si 0.820 3.180 23 H -0.196 1.196 24 H -0.193 1.193 25 H -0.196 1.196 26 C -0.096 4.096 27 H 0.115 0.885 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.128 0.872 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.122 0.878 39 H 0.054 0.946 40 H 0.119 0.881 41 H 0.067 0.933 42 H 0.131 0.869 43 H 0.227 0.773 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 9.460 -22.524 -7.752 25.630 hybrid contribution -0.670 1.298 -0.980 1.759 sum 8.790 -21.226 -8.732 24.577 Atomic orbital electron populations 1.22261 0.96029 1.03562 1.01493 1.22016 0.94338 0.79821 1.06073 1.48054 1.65548 1.15575 1.04233 1.21008 0.77272 0.86507 0.86357 1.90703 1.45969 1.19596 1.87808 1.22475 1.03153 0.93184 0.84385 1.87985 1.88731 1.40923 1.15266 1.23029 1.01339 0.99951 0.82757 1.21956 0.94660 0.92661 0.85927 0.85996 1.22649 0.96136 0.96218 1.01362 1.22936 0.88740 0.96866 1.00423 1.64537 1.05495 1.04137 1.48366 1.21939 0.93291 0.91683 1.01297 1.20590 0.90610 0.82965 0.82882 1.90435 1.62896 1.43840 1.52550 1.41950 1.09263 1.09905 1.60033 1.19728 0.85053 0.96726 1.44753 0.90155 1.26129 1.04865 0.94354 0.96145 1.69702 1.37806 1.02574 1.46277 0.84813 0.76472 0.78326 0.78349 1.19587 1.19274 1.19617 1.23435 0.98197 0.94498 0.93492 0.88511 0.94221 0.93500 0.87182 0.87546 0.86619 0.88431 0.89077 0.91556 0.92575 0.91737 0.87778 0.94586 0.88145 0.93308 0.86891 0.77256 0.91256 0.91751 0.95158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 10.24 71.98 0.74 -1.72 16 2 C 0.10 1.15 5.91 86.38 0.51 1.66 16 3 N -0.60 -13.28 2.54 -791.16 -2.01 -15.29 16 4 C 0.50 13.76 6.88 87.66 0.60 14.36 16 5 O -0.56 -21.72 12.84 16.00 0.21 -21.51 16 6 C 0.05 0.88 4.97 71.24 0.35 1.24 16 7 O -0.41 -10.29 10.24 -129.94 -1.33 -11.62 16 8 C 0.02 0.36 11.01 113.37 1.25 1.61 16 9 C 0.15 4.08 3.54 46.20 0.16 4.24 16 10 H 0.12 2.77 7.88 -2.39 -0.02 2.76 16 11 C -0.12 -3.10 6.16 31.47 0.19 -2.91 16 12 C 0.04 1.12 6.70 86.45 0.58 1.70 16 13 N -0.50 -19.04 5.11 -887.58 -4.54 -23.57 16 14 C 0.05 2.08 5.30 85.56 0.45 2.54 16 15 C 0.44 23.39 7.42 87.66 0.65 24.04 16 16 O -0.61 -35.94 13.87 -3.07 -0.04 -35.98 16 17 N -0.57 -32.23 5.29 -306.98 -1.62 -33.85 16 18 C -0.33 -20.03 9.68 84.04 0.81 -19.22 16 19 H 0.08 5.10 7.16 -2.91 -0.02 5.08 16 20 C -0.02 -0.87 5.50 84.92 0.47 -0.41 16 21 N -0.92 -52.54 13.05 21.66 0.28 -52.25 16 22 Si 1.00 44.72 29.55 68.60 2.03 46.75 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 C 0.03 1.27 4.93 86.65 0.43 1.70 16 27 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.04 0.78 8.14 -2.39 -0.02 0.77 16 29 H 0.05 0.75 7.22 -2.39 -0.02 0.73 16 30 H 0.11 0.59 6.44 -2.39 -0.02 0.57 16 31 H 0.11 0.83 7.96 -2.39 -0.02 0.81 16 32 H 0.12 1.20 7.40 -2.39 -0.02 1.18 16 33 H 0.10 1.43 7.19 -2.39 -0.02 1.42 16 34 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.06 1.81 6.32 -2.38 -0.02 1.80 16 38 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.04 1.13 7.68 -2.39 -0.02 1.11 16 40 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.05 2.06 7.98 -2.39 -0.02 2.04 16 42 H 0.11 4.16 8.14 -2.39 -0.02 4.14 16 43 H 0.39 21.33 7.90 -92.72 -0.73 20.60 16 44 H 0.28 14.70 8.31 -92.71 -0.77 13.93 16 45 H 0.06 2.95 6.43 -2.39 -0.02 2.94 16 46 H 0.03 1.38 5.65 -2.39 -0.01 1.37 16 Total: -1.00 -83.27 368.70 0.43 -82.84 By element: Atomic # 1 Polarization: 35.40 SS G_CDS: 0.26 Total: 35.65 kcal Atomic # 6 Polarization: 21.63 SS G_CDS: 7.20 Total: 28.84 kcal Atomic # 7 Polarization: -117.09 SS G_CDS: -7.89 Total: -124.97 kcal Atomic # 8 Polarization: -67.94 SS G_CDS: -1.17 Total: -69.11 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -83.27 0.43 -82.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494870987.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.505 kcal (2) G-P(sol) polarization free energy of solvation -83.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds