Wall clock time and date at job start Fri Apr 10 2020 18:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47190 * 2 1 4 4 H 1.09004 * 109.46958 * 54.36227 * 3 2 1 5 5 C 1.53003 * 109.46932 * 294.36637 * 3 2 1 6 6 N 1.46496 * 109.47100 * 184.99925 * 5 3 2 7 7 C 1.34770 * 119.99963 * 180.27578 * 6 5 3 8 8 O 1.21281 * 120.00508 * 359.72613 * 7 6 5 9 9 C 1.50706 * 120.00133 * 179.71989 * 7 6 5 10 10 H 1.08999 * 109.81839 * 55.70471 * 9 7 6 11 11 C 1.54378 * 109.83107 * 294.81904 * 9 7 6 12 12 C 1.55460 * 102.18341 * 219.17906 * 11 9 7 13 13 C 1.54947 * 100.98760 * 34.03884 * 12 11 9 14 14 O 1.43235 * 109.83174 * 176.58708 * 9 7 6 15 15 N 1.46894 * 109.47347 * 174.36538 * 3 2 1 16 16 C 1.46900 * 110.99961 * 273.38713 * 15 3 2 17 17 C 1.50708 * 109.47120 * 174.78312 * 16 15 3 18 18 O 1.21290 * 119.99598 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99769 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99690 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00216 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00043 * 179.97438 * 20 19 17 23 23 N 1.31408 * 119.99716 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99917 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47063 * 90.00683 * 24 22 20 26 26 H 1.48505 * 109.47182 * 210.00420 * 24 22 20 27 27 H 1.48497 * 109.47306 * 330.00460 * 24 22 20 28 28 H 1.08994 * 109.47620 * 305.80958 * 1 2 3 29 29 H 1.09006 * 109.47006 * 65.81574 * 1 2 3 30 30 H 1.09005 * 109.46629 * 185.80991 * 1 2 3 31 31 H 1.09004 * 109.47712 * 239.99748 * 2 1 3 32 32 H 1.09002 * 109.47204 * 119.99895 * 2 1 3 33 33 H 1.09005 * 109.47128 * 64.99573 * 5 3 2 34 34 H 1.09000 * 109.46860 * 305.00205 * 5 3 2 35 35 H 0.97007 * 120.00224 * 359.97438 * 6 5 3 36 36 H 1.08996 * 110.84743 * 337.31354 * 11 9 7 37 37 H 1.08997 * 110.84845 * 100.93629 * 11 9 7 38 38 H 1.08998 * 111.05750 * 276.12021 * 12 11 9 39 39 H 1.09002 * 111.14415 * 151.99320 * 12 11 9 40 40 H 1.08998 * 110.30471 * 204.69169 * 13 12 11 41 41 H 1.08997 * 110.30852 * 82.52041 * 13 12 11 42 42 H 1.00902 * 110.99935 * 149.43384 * 15 3 2 43 43 H 1.08998 * 109.46883 * 294.77848 * 16 15 3 44 44 H 1.09002 * 109.47517 * 54.78194 * 16 15 3 45 45 H 0.96992 * 120.00248 * 0.02562 * 19 17 16 46 46 H 0.97000 * 119.99929 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9847 0.8352 5 6 1.6489 2.1217 -1.3140 6 7 2.2383 3.4619 -1.3653 7 6 2.0223 4.2525 -2.4352 8 8 1.3442 3.8527 -3.3578 9 6 2.6234 5.6336 -2.4852 10 1 3.7033 5.5717 -2.3514 11 6 2.0077 6.5132 -1.3759 12 6 1.8544 7.8846 -2.0917 13 6 1.5320 7.4288 -3.5371 14 8 2.3242 6.2485 -3.7438 15 7 3.5026 1.4448 0.1360 16 6 3.9000 1.4095 1.5498 17 6 5.3986 1.2836 1.6474 18 8 6.0695 1.2283 0.6385 19 7 5.9932 1.2325 2.8559 20 6 7.3564 1.1175 2.9447 21 1 7.9539 1.0683 2.0463 22 6 7.9696 1.0654 4.1905 23 7 7.2426 1.1258 5.2835 24 14 9.8271 0.9095 4.3115 25 1 10.4364 2.2634 4.3445 26 1 10.1825 0.1763 5.5531 27 1 10.3391 0.1647 3.1332 28 1 -0.3634 0.6012 0.8333 29 1 -0.3633 0.4210 -0.9375 30 1 -0.3633 -1.0225 0.1040 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.5633 2.1996 -1.3737 34 1 2.0173 1.5304 -2.1523 35 1 2.7803 3.7820 -0.6273 36 1 1.0365 6.1259 -1.0680 37 1 2.6830 6.5921 -0.5239 38 1 2.7851 8.4509 -2.0567 39 1 1.0308 8.4594 -1.6681 40 1 1.8143 8.2036 -4.2499 41 1 0.4718 7.1943 -3.6322 42 1 3.9082 2.2404 -0.3338 43 1 3.5799 2.3287 2.0402 44 1 3.4311 0.5550 2.0378 45 1 5.4566 1.2764 3.6626 46 1 7.6706 1.0890 6.1533 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494936912.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:17 Heat of formation + Delta-G solvation = -123.798554 kcal Electronic energy + Delta-G solvation = -26274.717617 eV Core-core repulsion = 22392.036377 eV Total energy + Delta-G solvation = -3882.681240 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.59891 -38.98422 -38.26003 -37.14811 -34.22662 -33.93154 -32.65569 -32.45585 -31.23491 -30.37778 -28.27914 -26.14272 -24.54786 -23.71152 -23.22313 -22.15216 -20.65042 -20.22156 -19.33392 -18.02489 -17.80772 -17.23559 -16.40008 -16.01122 -15.91969 -15.59225 -15.32904 -14.79376 -14.57920 -14.50640 -13.99676 -13.94288 -13.66080 -13.52368 -13.34684 -13.32763 -12.62792 -12.43701 -12.29845 -12.07395 -11.89854 -11.71614 -11.66710 -11.57482 -11.40749 -11.37091 -11.19245 -11.06581 -10.61282 -10.49144 -10.41697 -10.24689 -9.53990 -9.49985 -9.24055 -8.52761 -8.13361 -7.99570 -6.45057 -3.85874 2.43104 2.78941 3.15405 3.24551 3.30628 3.58213 3.86483 3.97587 4.02188 4.23638 4.35097 4.43234 4.59493 4.72299 4.76733 4.86890 5.00905 5.08295 5.15867 5.21534 5.25221 5.26730 5.33736 5.36279 5.40337 5.44212 5.51163 5.66003 5.67136 5.70397 5.81828 5.85354 5.99951 6.12390 6.16463 6.22752 6.35673 6.55140 7.10842 7.26022 7.52161 7.52399 8.02946 8.04610 8.57876 9.14901 9.50749 10.02285 10.72646 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.012324 B = 0.002925 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.475513 B = 9569.922599 C =11183.278466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C 0.077 3.923 4 H 0.050 0.950 5 C 0.117 3.883 6 N -0.729 5.729 7 C 0.503 3.497 8 O -0.524 6.524 9 C 0.063 3.937 10 H 0.111 0.889 11 C -0.147 4.147 12 C -0.155 4.155 13 C 0.047 3.953 14 O -0.351 6.351 15 N -0.664 5.664 16 C 0.049 3.951 17 C 0.440 3.560 18 O -0.580 6.580 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.399 0.601 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.346 0.654 43 H 0.043 0.957 44 H 0.088 0.912 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.392 10.209 -7.729 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.033 4.033 4 H 0.068 0.932 5 C -0.006 4.006 6 N -0.385 5.385 7 C 0.288 3.712 8 O -0.398 6.398 9 C 0.002 3.998 10 H 0.129 0.871 11 C -0.185 4.185 12 C -0.192 4.192 13 C -0.029 4.029 14 O -0.269 6.269 15 N -0.298 5.298 16 C -0.083 4.083 17 C 0.225 3.775 18 O -0.464 6.464 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.233 0.767 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.080 0.920 42 H 0.167 0.833 43 H 0.061 0.939 44 H 0.106 0.894 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.242 9.123 -9.197 20.003 hybrid contribution 0.595 0.991 1.659 2.022 sum -14.647 10.114 -7.538 19.330 Atomic orbital electron populations 1.21845 0.95911 1.01847 1.01663 1.21489 0.94655 0.95207 1.03609 1.21853 0.88993 0.96889 0.95607 0.93239 1.21664 0.98431 0.81983 0.98526 1.46034 1.54293 1.16620 1.21507 1.20965 0.80979 0.87161 0.82076 1.90710 1.38380 1.74651 1.36106 1.22677 1.00838 0.90638 0.85657 0.87144 1.23162 1.02528 0.94782 0.98045 1.23310 1.03412 0.97060 0.95427 1.23480 0.95818 0.87141 0.96487 1.88538 1.71753 1.40324 1.26266 1.60009 1.06488 1.50215 1.13082 1.21757 0.96173 1.01109 0.89271 1.19788 0.88485 0.84712 0.84496 1.90538 1.65171 1.55246 1.35455 1.41864 1.07934 1.64033 1.06231 1.19702 0.82036 1.47135 0.94007 0.87920 1.25257 1.00556 0.97320 0.94776 1.69608 1.36291 1.50531 0.97921 0.85864 0.82232 0.78410 0.77836 1.20419 1.20915 1.19372 0.92862 0.92644 0.92468 0.90856 0.91124 0.90673 0.90282 0.76665 0.89983 0.88659 0.89762 0.89459 0.89141 0.91960 0.83252 0.93896 0.89398 0.77509 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.54 37.16 0.35 -1.01 16 2 C -0.11 -1.22 5.65 -26.73 -0.15 -1.37 16 3 C 0.08 0.87 2.26 -67.71 -0.15 0.72 16 4 H 0.05 0.51 7.83 -51.93 -0.41 0.11 16 5 C 0.12 1.33 4.95 -4.04 -0.02 1.31 16 6 N -0.73 -7.91 4.95 -60.29 -0.30 -8.21 16 7 C 0.50 6.44 7.03 -10.99 -0.08 6.37 16 8 O -0.52 -8.89 16.52 -14.10 -0.23 -9.13 16 9 C 0.06 0.65 3.94 -27.16 -0.11 0.55 16 10 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 11 C -0.15 -1.05 6.53 -24.70 -0.16 -1.21 16 12 C -0.15 -0.96 7.16 -24.40 -0.17 -1.13 16 13 C 0.05 0.40 7.78 38.19 0.30 0.69 16 14 O -0.35 -4.34 10.56 -54.88 -0.58 -4.92 16 15 N -0.66 -9.91 5.84 -107.99 -0.63 -10.54 16 16 C 0.05 0.81 5.93 -4.97 -0.03 0.78 16 17 C 0.44 9.99 7.83 -10.98 -0.09 9.90 16 18 O -0.58 -15.40 15.89 5.55 0.09 -15.31 16 19 N -0.56 -13.85 5.29 -10.96 -0.06 -13.91 16 20 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 21 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.08 13.05 55.50 0.72 -23.36 16 24 Si 0.93 20.75 29.55 -169.99 -5.02 15.72 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.47 6.99 -51.93 -0.36 0.11 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.83 7.41 -51.93 -0.38 0.45 16 33 H 0.08 0.81 6.97 -51.93 -0.36 0.45 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.40 3.66 7.40 -40.82 -0.30 3.36 16 36 H 0.08 0.59 7.84 -51.93 -0.41 0.19 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.35 5.24 6.61 -39.29 -0.26 4.98 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.09 1.34 7.38 -51.93 -0.38 0.96 16 45 H 0.39 9.17 7.90 -40.82 -0.32 8.85 16 46 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 378.13 15.07 5.70 5.70 Total: -1.00 -34.26 378.13 -8.21 -42.48 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -7.35 Total: 13.71 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -0.55 Total: 7.76 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.26 Total: -56.01 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.72 Total: -29.36 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.26 -8.21 -42.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494936912.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.322 kcal (2) G-P(sol) polarization free energy of solvation -34.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds