Wall clock time and date at job start Fri Apr 10 2020 18:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47094 * 2 1 4 4 H 1.08998 * 109.46811 * 305.59362 * 3 2 1 5 5 C 1.52991 * 109.47734 * 65.59400 * 3 2 1 6 6 N 1.46493 * 109.47497 * 175.00211 * 5 3 2 7 7 C 1.34777 * 120.00020 * 179.97438 * 6 5 3 8 8 O 1.21280 * 120.00328 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99772 * 179.97438 * 7 6 5 10 10 H 1.08996 * 110.42777 * 302.69325 * 9 7 6 11 11 C 1.54479 * 110.37246 * 65.00805 * 9 7 6 12 12 C 1.54507 * 104.06831 * 142.80662 * 11 9 7 13 13 C 1.54480 * 104.18114 * 359.93199 * 12 11 9 14 14 O 1.44433 * 110.37288 * 180.38403 * 9 7 6 15 15 N 1.46903 * 109.47045 * 185.59944 * 3 2 1 16 16 C 1.46893 * 111.00283 * 85.70686 * 15 3 2 17 17 C 1.50706 * 109.47335 * 176.52129 * 16 15 3 18 18 O 1.21296 * 119.99589 * 0.02562 * 17 16 15 19 19 N 1.34767 * 120.00243 * 179.97438 * 17 16 15 20 20 C 1.37097 * 120.00114 * 179.97438 * 19 17 16 21 21 H 1.07992 * 119.99983 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00083 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00025 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00094 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46908 * 90.00062 * 24 22 20 26 26 H 1.48500 * 109.47285 * 210.00326 * 24 22 20 27 27 H 1.48500 * 109.47110 * 330.00447 * 24 22 20 28 28 H 1.08997 * 109.46650 * 63.10862 * 1 2 3 29 29 H 1.08997 * 109.46817 * 183.10848 * 1 2 3 30 30 H 1.08999 * 109.47062 * 303.10958 * 1 2 3 31 31 H 1.08998 * 109.47252 * 239.99479 * 2 1 3 32 32 H 1.09000 * 109.47045 * 119.98923 * 2 1 3 33 33 H 1.08999 * 109.47090 * 54.99661 * 5 3 2 34 34 H 1.09007 * 109.47134 * 295.00291 * 5 3 2 35 35 H 0.97003 * 120.00149 * 0.02562 * 6 5 3 36 36 H 1.08998 * 110.51046 * 24.15922 * 11 9 7 37 37 H 1.08999 * 110.50971 * 261.45355 * 11 9 7 38 38 H 1.08994 * 110.51133 * 118.64036 * 12 11 9 39 39 H 1.09000 * 110.51330 * 241.22244 * 12 11 9 40 40 H 1.08998 * 110.37340 * 94.92465 * 13 12 11 41 41 H 1.09000 * 110.37155 * 217.26298 * 13 12 11 42 42 H 1.00901 * 110.99790 * 209.66252 * 15 3 2 43 43 H 1.08996 * 109.47201 * 296.52702 * 16 15 3 44 44 H 1.09007 * 109.47289 * 56.52361 * 16 15 3 45 45 H 0.97009 * 120.00176 * 0.02562 * 19 17 16 46 46 H 0.97000 * 120.00173 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5972 1.9844 -0.8357 5 6 1.6481 2.1221 1.3135 6 7 2.2374 3.4623 1.3647 7 6 2.0250 4.2514 2.4365 8 8 1.3463 3.8517 3.3588 9 6 2.6317 5.6298 2.4894 10 1 3.7151 5.5729 2.3845 11 6 2.0305 6.5249 1.3831 12 6 1.9169 7.9159 2.0459 13 6 2.4607 7.6996 3.4755 14 8 2.2804 6.2867 3.7269 15 7 3.5028 1.4447 -0.1351 16 6 3.9011 1.3874 -1.5479 17 6 5.4019 1.4774 -1.6508 18 8 6.0737 1.5789 -0.6459 19 7 5.9978 1.4442 -2.8591 20 6 7.3630 1.5266 -2.9528 21 1 7.9611 1.6178 -2.0582 22 6 7.9774 1.4918 -4.1986 23 7 7.2497 1.3804 -5.2872 24 14 9.8377 1.6034 -4.3261 25 1 10.4199 0.2382 -4.2769 26 1 10.2078 2.2535 -5.6089 27 1 10.3641 2.4072 -3.1939 28 1 -0.3632 0.4648 -0.9165 29 1 -0.3633 -1.0261 0.0557 30 1 -0.3633 0.5614 0.8608 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 2.0160 1.5311 2.1522 34 1 0.5625 2.2001 1.3725 35 1 2.7800 3.7821 0.6269 36 1 1.0462 6.1601 1.0896 37 1 2.6963 6.5657 0.5211 38 1 2.5266 8.6445 1.5116 39 1 0.8766 8.2399 2.0779 40 1 3.5178 7.9611 3.5230 41 1 1.8902 8.2907 4.1919 42 1 3.9070 2.2482 0.3222 43 1 3.5628 0.4470 -1.9829 44 1 3.4494 2.2202 -2.0869 45 1 5.4606 1.3626 -3.6628 46 1 7.6785 1.3564 -6.1569 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494936921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:22 Heat of formation + Delta-G solvation = -149.492187 kcal Electronic energy + Delta-G solvation = -26288.230581 eV Core-core repulsion = 22404.435182 eV Total energy + Delta-G solvation = -3883.795399 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.43833 -40.28754 -39.58858 -38.36460 -35.98988 -35.17270 -33.77829 -33.20104 -33.08572 -31.09401 -29.32274 -27.61463 -25.86764 -24.97018 -24.19006 -22.50345 -21.64018 -21.19518 -21.08800 -19.91977 -18.83388 -17.93911 -17.63316 -17.25668 -16.84951 -16.66514 -16.35920 -16.16735 -16.01842 -15.77281 -15.43791 -15.09800 -14.82051 -14.65676 -14.47063 -14.23196 -13.88132 -13.65038 -13.49201 -13.28605 -12.90783 -12.84369 -12.75508 -12.62324 -12.43691 -12.38615 -12.29227 -12.11286 -12.01448 -11.72411 -11.51317 -11.47470 -11.10556 -10.73473 -10.33307 -10.24523 -10.00468 -9.37696 -8.45996 -5.94268 1.38631 1.42265 1.43326 1.55169 1.80307 2.06172 2.29504 2.84280 3.02388 3.21963 3.40963 3.45920 3.61556 3.67509 3.88235 4.04276 4.09560 4.18375 4.21163 4.31138 4.34268 4.41356 4.47680 4.60452 4.61344 4.64733 4.69386 4.77565 4.80577 4.88794 4.95554 4.97407 5.10054 5.23632 5.24374 5.32295 5.42304 5.49372 5.68246 5.88479 6.09182 6.31869 6.35086 6.60972 7.04997 7.13867 7.57603 8.12689 8.71187 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.011179 B = 0.003089 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.162356 B = 9061.381356 C =10946.061121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.110 4.110 3 C 0.085 3.915 4 H 0.072 0.928 5 C 0.122 3.878 6 N -0.716 5.716 7 C 0.518 3.482 8 O -0.569 6.569 9 C 0.052 3.948 10 H 0.111 0.889 11 C -0.142 4.142 12 C -0.148 4.148 13 C 0.032 3.968 14 O -0.385 6.385 15 N -0.681 5.681 16 C 0.064 3.936 17 C 0.437 3.563 18 O -0.624 6.624 19 N -0.571 5.571 20 C -0.333 4.333 21 H 0.078 0.922 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.990 3.010 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.272 1.272 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.409 0.591 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.344 0.656 43 H 0.104 0.896 44 H 0.075 0.925 45 H 0.397 0.603 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.797 9.827 6.325 18.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C -0.025 4.025 4 H 0.090 0.910 5 C -0.002 4.002 6 N -0.371 5.371 7 C 0.305 3.695 8 O -0.448 6.448 9 C -0.009 4.009 10 H 0.128 0.872 11 C -0.180 4.180 12 C -0.186 4.186 13 C -0.044 4.044 14 O -0.304 6.304 15 N -0.316 5.316 16 C -0.068 4.068 17 C 0.224 3.776 18 O -0.511 6.511 19 N -0.208 5.208 20 C -0.463 4.463 21 H 0.096 0.904 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.814 3.186 25 H -0.199 1.199 26 H -0.195 1.195 27 H -0.197 1.197 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.246 0.754 36 H 0.094 0.906 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.123 0.877 42 H 0.165 0.835 43 H 0.122 0.878 44 H 0.093 0.907 45 H 0.231 0.769 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.800 8.831 7.742 18.894 hybrid contribution 0.945 0.799 -1.168 1.702 sum -13.855 9.630 6.574 18.108 Atomic orbital electron populations 1.21811 0.94103 1.02550 1.02324 1.21480 0.96221 0.94430 1.02743 1.21878 0.86835 0.97650 0.96101 0.91035 1.21628 0.98975 0.81607 0.97942 1.45878 1.53772 1.16308 1.21094 1.20671 0.80127 0.87042 0.81665 1.90694 1.40605 1.75523 1.37963 1.23033 1.00563 0.90360 0.86947 0.87155 1.22970 1.02666 0.94566 0.97751 1.22947 1.03504 0.96897 0.95204 1.23803 1.01920 0.80800 0.97839 1.89264 1.89194 1.19984 1.31941 1.60101 1.08817 1.49861 1.12802 1.21636 0.90801 1.03714 0.90632 1.20869 0.91188 0.82331 0.83170 1.90509 1.67109 1.56498 1.36947 1.41912 1.07092 1.64484 1.07317 1.19647 0.83303 1.49423 0.93883 0.90362 1.25985 1.04604 0.96333 0.94146 1.69660 1.37782 1.50039 0.98505 0.84972 0.77207 0.78576 0.77878 1.19941 1.19542 1.19700 0.91786 0.91816 0.92402 0.91503 0.92169 0.92194 0.89511 0.75423 0.90562 0.87159 0.87800 0.89959 0.90568 0.87661 0.83519 0.87816 0.90694 0.76906 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.75 71.98 0.70 -1.59 16 2 C -0.11 -2.18 5.65 30.59 0.17 -2.01 16 3 C 0.08 1.76 2.27 44.91 0.10 1.86 16 4 H 0.07 1.24 7.73 -2.39 -0.02 1.22 16 5 C 0.12 2.67 4.95 86.38 0.43 3.10 16 6 N -0.72 -15.38 4.97 -463.08 -2.30 -17.68 16 7 C 0.52 13.70 7.08 87.66 0.62 14.32 16 8 O -0.57 -20.29 16.55 15.34 0.25 -20.04 16 9 C 0.05 1.09 3.71 30.35 0.11 1.20 16 10 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 11 C -0.14 -1.98 6.61 31.61 0.21 -1.77 16 12 C -0.15 -1.70 7.08 31.61 0.22 -1.48 16 13 C 0.03 0.49 7.65 72.49 0.55 1.05 16 14 O -0.38 -9.79 10.91 -130.61 -1.43 -11.21 16 15 N -0.68 -19.37 5.99 -495.59 -2.97 -22.34 16 16 C 0.06 1.97 6.00 85.56 0.51 2.48 16 17 C 0.44 19.52 7.81 87.66 0.68 20.20 16 18 O -0.62 -33.06 15.70 -3.08 -0.05 -33.11 16 19 N -0.57 -27.85 5.29 -306.99 -1.62 -29.48 16 20 C -0.33 -18.30 9.68 84.04 0.81 -17.48 16 21 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 22 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 23 N -0.92 -48.05 13.05 21.66 0.28 -47.77 16 24 Si 0.99 41.81 29.55 68.60 2.03 43.83 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 26 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 0.87 6.56 -2.39 -0.02 0.85 16 31 H 0.07 1.39 7.45 -2.39 -0.02 1.37 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 34 H 0.09 1.77 6.76 -2.38 -0.02 1.75 16 35 H 0.41 7.29 7.39 -92.71 -0.68 6.61 16 36 H 0.08 1.13 7.86 -2.39 -0.02 1.11 16 37 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.34 10.30 6.28 -89.69 -0.56 9.74 16 43 H 0.10 2.92 7.48 -2.39 -0.02 2.90 16 44 H 0.08 1.87 7.97 -2.38 -0.02 1.85 16 45 H 0.40 18.30 7.90 -92.70 -0.73 17.56 16 46 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16 Total: -1.00 -74.49 377.34 -1.16 -75.65 By element: Atomic # 1 Polarization: 43.30 SS G_CDS: -0.97 Total: 42.34 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: 5.60 Total: 19.81 kcal Atomic # 7 Polarization: -110.65 SS G_CDS: -6.61 Total: -117.26 kcal Atomic # 8 Polarization: -63.14 SS G_CDS: -1.22 Total: -64.36 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -74.49 -1.16 -75.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494936921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.842 kcal (2) G-P(sol) polarization free energy of solvation -74.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds