Wall clock time and date at job start Fri Apr 10 2020 18:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99882 * 2 1 4 4 C 1.52998 * 109.47197 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46904 * 65.00205 * 4 3 2 6 6 C 1.46760 * 124.34669 * 89.99982 * 5 4 3 7 7 C 1.54480 * 105.54782 * 162.91674 * 6 5 4 8 8 H 1.09000 * 110.97126 * 267.34164 * 7 6 5 9 9 C 1.50706 * 110.97017 * 143.57833 * 7 6 5 10 10 O 1.21277 * 119.99637 * 0.02562 * 9 7 6 11 11 N 1.34778 * 120.00137 * 180.02562 * 9 7 6 12 12 C 1.46494 * 120.00044 * 180.02562 * 11 9 7 13 13 H 1.09005 * 109.47143 * 34.99725 * 12 11 9 14 14 C 1.52996 * 109.47138 * 274.99669 * 12 11 9 15 15 C 1.52997 * 109.46955 * 154.99604 * 12 11 9 16 16 N 1.46494 * 109.47368 * 304.99922 * 15 12 11 17 17 C 1.36941 * 119.99990 * 179.97438 * 16 15 12 18 18 H 1.07994 * 120.00121 * 0.02562 * 17 16 15 19 19 C 1.38812 * 119.99718 * 180.02562 * 17 16 15 20 20 N 1.31614 * 120.00579 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99794 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46843 * 60.00421 * 21 19 17 23 23 H 1.48503 * 109.47087 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47178 * 300.00076 * 21 19 17 25 25 C 1.54861 * 101.66110 * 25.43666 * 7 6 5 26 26 C 1.34415 * 124.35027 * 269.97473 * 5 4 3 27 27 O 1.21284 * 124.94104 * 0.41322 * 26 5 4 28 28 H 1.08998 * 109.47171 * 299.99609 * 1 2 3 29 29 H 1.09001 * 109.47934 * 59.99986 * 1 2 3 30 30 H 1.09009 * 109.46970 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46655 * 60.00402 * 3 2 1 32 32 H 1.08998 * 109.47185 * 300.00866 * 3 2 1 33 33 H 1.09003 * 109.46934 * 305.00329 * 4 3 2 34 34 H 1.08995 * 109.47116 * 185.00071 * 4 3 2 35 35 H 1.09002 * 110.24740 * 281.96247 * 6 5 4 36 36 H 1.09002 * 110.24616 * 43.87772 * 6 5 4 37 37 H 0.97001 * 119.99275 * 359.97438 * 11 9 7 38 38 H 1.09000 * 109.47603 * 299.99979 * 14 12 11 39 39 H 1.09003 * 109.47202 * 60.00088 * 14 12 11 40 40 H 1.09003 * 109.47422 * 179.97438 * 14 12 11 41 41 H 1.09001 * 109.47098 * 65.00293 * 15 12 11 42 42 H 1.09002 * 109.46912 * 185.00183 * 15 12 11 43 43 H 0.97004 * 120.00500 * 0.02562 * 16 15 12 44 44 H 0.96996 * 120.00631 * 180.02562 * 20 19 17 45 45 H 1.08998 * 110.46775 * 216.51886 * 25 7 6 46 46 H 1.08993 * 110.60550 * 93.93039 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.3109 1.3089 -2.4724 7 6 5.1169 0.3253 -3.3494 8 1 6.1871 0.4308 -3.1714 9 6 4.7938 0.5150 -4.8092 10 8 3.9910 1.3585 -5.1478 11 7 5.3971 -0.2527 -5.7383 12 6 5.0835 -0.0679 -7.1572 13 1 4.9012 0.9885 -7.3545 14 6 3.8340 -0.8761 -7.5128 15 6 6.2612 -0.5495 -8.0068 16 7 7.4826 0.1400 -7.5839 17 6 8.6723 -0.1315 -8.2054 18 1 8.7100 -0.8536 -9.0075 19 6 9.8297 0.5216 -7.8043 20 7 9.7839 1.4012 -6.8264 21 14 11.4527 0.1507 -8.6516 22 1 11.3414 0.4731 -10.0970 23 1 12.5286 0.9730 -8.0420 24 1 11.7784 -1.2889 -8.4891 25 6 4.6018 -1.0432 -2.8394 26 6 4.1248 -0.7592 -1.4321 27 8 3.9086 -1.6032 -0.5883 28 1 -0.3633 0.5138 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6884 1.8465 -0.8899 33 1 3.8514 0.5682 0.8409 34 1 3.9784 2.1766 0.0889 35 1 3.4014 1.6164 -2.9887 36 1 4.9180 2.1804 -2.2275 37 1 6.0395 -0.9271 -5.4673 38 1 4.0161 -1.9325 -7.3157 39 1 2.9949 -0.5329 -6.9076 40 1 3.6003 -0.7382 -8.5686 41 1 6.3873 -1.6244 -7.8770 42 1 6.0654 -0.3308 -9.0565 43 1 7.4489 0.7884 -6.8631 44 1 10.5925 1.8578 -6.5464 45 1 5.4101 -1.7744 -2.8278 46 1 3.7770 -1.3973 -3.4576 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497822489.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:26 Heat of formation + Delta-G solvation = -128.881451 kcal Electronic energy + Delta-G solvation = -26701.085510 eV Core-core repulsion = 22818.183859 eV Total energy + Delta-G solvation = -3882.901651 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.84320 -40.42561 -38.75613 -37.85277 -37.09508 -35.42685 -34.43121 -32.93115 -31.53472 -30.07615 -28.69281 -27.39357 -27.22383 -25.12958 -24.36682 -23.61996 -22.00145 -21.16364 -20.39637 -19.21288 -18.61573 -17.92669 -17.55181 -17.18702 -16.95926 -16.62452 -16.51624 -16.06455 -15.91730 -15.61326 -15.31286 -15.19401 -14.77008 -14.54568 -14.37309 -14.11868 -13.84346 -13.62937 -13.59902 -13.41337 -13.05299 -12.94397 -12.73397 -12.73142 -12.64200 -12.41194 -12.33711 -12.17527 -12.10371 -11.86151 -11.66723 -11.12569 -10.93358 -10.70189 -10.60359 -10.01053 -9.71586 -8.97544 -7.91955 -5.20533 1.51030 1.52552 1.56222 1.58561 1.62453 1.92121 2.28602 2.58562 2.89252 3.23649 3.37751 3.42639 3.73183 3.87911 3.91370 4.07055 4.09892 4.14513 4.24844 4.35810 4.37330 4.45492 4.46910 4.53015 4.55444 4.56534 4.64272 4.76848 4.80441 4.84322 4.86240 4.89871 4.96740 4.98822 5.16361 5.35224 5.53856 5.54062 5.62166 6.08174 6.26269 6.29457 6.60140 7.16931 7.26250 7.37332 8.11062 8.34959 9.30714 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.019903 B = 0.002828 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.455692 B = 9900.358091 C =10564.760926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.412 6.412 3 C 0.038 3.962 4 C 0.122 3.878 5 N -0.613 5.613 6 C 0.121 3.879 7 C -0.115 4.115 8 H 0.133 0.867 9 C 0.529 3.471 10 O -0.575 6.575 11 N -0.703 5.703 12 C 0.141 3.859 13 H 0.063 0.937 14 C -0.147 4.147 15 C 0.144 3.856 16 N -0.742 5.742 17 C -0.244 4.244 18 H 0.077 0.923 19 C -0.071 4.071 20 N -0.966 5.966 21 Si 0.970 3.030 22 H -0.281 1.281 23 H -0.298 1.298 24 H -0.277 1.277 25 C -0.135 4.135 26 C 0.518 3.482 27 O -0.563 6.563 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.130 0.870 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.411 0.589 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.040 0.960 42 H 0.036 0.964 43 H 0.376 0.624 44 H 0.250 0.750 45 H 0.124 0.876 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.354 -1.083 11.717 20.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C -0.040 4.040 4 C 0.001 3.999 5 N -0.346 5.346 6 C -0.001 4.001 7 C -0.137 4.137 8 H 0.150 0.850 9 C 0.316 3.684 10 O -0.455 6.455 11 N -0.353 5.353 12 C 0.036 3.964 13 H 0.081 0.919 14 C -0.206 4.206 15 C 0.018 3.982 16 N -0.386 5.386 17 C -0.376 4.376 18 H 0.095 0.905 19 C -0.264 4.264 20 N -0.616 5.616 21 Si 0.799 3.201 22 H -0.208 1.208 23 H -0.225 1.225 24 H -0.203 1.203 25 C -0.175 4.175 26 C 0.306 3.694 27 O -0.442 6.442 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.148 0.852 35 H 0.098 0.902 36 H 0.123 0.877 37 H 0.247 0.753 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.208 0.792 44 H 0.059 0.941 45 H 0.143 0.857 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.844 -1.140 11.838 20.619 hybrid contribution 1.067 0.230 -0.186 1.107 sum -15.778 -0.910 11.651 19.634 Atomic orbital electron populations 1.22837 0.80142 1.03105 1.00695 1.88020 1.20898 1.28722 1.95540 1.23156 0.94148 0.84883 1.01782 1.21686 0.92693 1.00599 0.84962 1.48295 1.66269 1.06853 1.13169 1.21981 1.00248 0.94452 0.83461 1.22210 1.03840 0.96651 0.90998 0.84951 1.20331 0.79976 0.80138 0.87977 1.90665 1.36312 1.35800 1.82691 1.45942 1.44483 1.38644 1.06273 1.21084 0.95012 1.00185 0.80117 0.91890 1.22008 0.95703 1.00376 1.02482 1.21134 0.84917 0.95862 0.96330 1.42503 1.03798 1.49667 1.42604 1.19572 0.86772 1.18318 1.12934 0.90511 1.25490 1.01131 0.99752 1.00022 1.69788 1.28242 1.31355 1.32231 0.85274 0.79611 0.77393 0.77808 1.20784 1.22495 1.20312 1.22325 1.04184 0.97377 0.93607 1.20999 0.76125 0.82555 0.89705 1.90697 1.53196 1.50283 1.49976 0.92522 0.93799 0.89825 0.89929 0.92733 0.90378 0.85229 0.90217 0.87709 0.75334 0.90947 0.92806 0.90391 0.94230 0.94634 0.79185 0.94092 0.85750 0.87319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.41 -9.79 10.23 -148.98 -1.52 -11.31 16 3 C 0.04 0.63 6.28 71.98 0.45 1.08 16 4 C 0.12 2.07 6.33 86.38 0.55 2.62 16 5 N -0.61 -13.13 2.90 -817.98 -2.37 -15.50 16 6 C 0.12 2.42 6.70 86.83 0.58 3.00 16 7 C -0.12 -2.48 3.55 -10.40 -0.04 -2.51 16 8 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 9 C 0.53 14.71 7.04 87.66 0.62 15.33 16 10 O -0.57 -19.47 15.17 -3.02 -0.05 -19.52 16 11 N -0.70 -19.57 4.52 -442.55 -2.00 -21.57 16 12 C 0.14 4.26 2.73 44.99 0.12 4.38 16 13 H 0.06 2.23 7.58 -2.38 -0.02 2.22 16 14 C -0.15 -3.46 9.48 71.98 0.68 -2.78 16 15 C 0.14 5.12 5.82 86.38 0.50 5.62 16 16 N -0.74 -34.77 5.43 -343.47 -1.87 -36.63 16 17 C -0.24 -12.85 9.99 84.03 0.84 -12.01 16 18 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 19 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 20 N -0.97 -56.58 13.06 21.65 0.28 -56.29 16 21 Si 0.97 44.48 29.55 68.60 2.03 46.50 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 24 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 25 C -0.13 -2.83 6.41 30.67 0.20 -2.63 16 26 C 0.52 13.75 7.73 87.90 0.68 14.43 16 27 O -0.56 -19.47 17.46 -3.04 -0.05 -19.52 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 1.56 7.93 -2.39 -0.02 1.54 16 34 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.08 1.81 6.96 -2.39 -0.02 1.79 16 36 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.41 10.69 8.60 -92.71 -0.80 9.89 16 38 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.38 18.94 7.33 -92.71 -0.68 18.26 16 44 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 45 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.11 2.26 7.90 -2.39 -0.02 2.24 16 Total: -1.00 -73.94 384.64 0.86 -73.09 By element: Atomic # 1 Polarization: 36.46 SS G_CDS: -0.49 Total: 35.97 kcal Atomic # 6 Polarization: 17.89 SS G_CDS: 6.90 Total: 24.79 kcal Atomic # 7 Polarization: -124.05 SS G_CDS: -5.95 Total: -130.00 kcal Atomic # 8 Polarization: -48.73 SS G_CDS: -1.62 Total: -50.35 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -73.94 0.86 -73.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497822489.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.794 kcal (2) G-P(sol) polarization free energy of solvation -73.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds