Wall clock time and date at job start Fri Apr 10 2020 18:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46858 * 2 1 4 4 C 1.50697 * 109.47180 * 120.00214 * 2 1 3 5 5 O 1.21291 * 120.00360 * 90.58837 * 4 2 1 6 6 N 1.34783 * 119.99781 * 270.59236 * 4 2 1 7 7 C 1.37102 * 119.99883 * 355.68121 * 6 4 2 8 8 H 1.08001 * 120.00097 * 314.59144 * 7 6 4 9 9 C 1.38949 * 119.99564 * 134.58730 * 7 6 4 10 10 N 1.31416 * 120.00331 * 2.32969 * 9 7 6 11 11 Si 1.86799 * 119.99833 * 182.32250 * 9 7 6 12 12 H 1.48497 * 109.47312 * 60.00083 * 11 9 7 13 13 H 1.48493 * 109.47213 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47147 * 300.00577 * 11 9 7 15 15 C 1.46494 * 119.99970 * 175.68197 * 6 4 2 16 16 C 1.53004 * 109.47353 * 94.21473 * 15 6 4 17 17 C 1.50699 * 109.47528 * 179.97438 * 16 15 6 18 18 O 1.20823 * 119.99622 * 0.02562 * 17 16 15 19 19 O 1.34227 * 119.99799 * 180.02562 * 17 16 15 20 20 N 1.46896 * 109.46921 * 239.99936 * 2 1 3 21 21 C 1.46958 * 111.00139 * 181.62221 * 20 2 1 22 22 C 1.53050 * 109.37009 * 176.81214 * 21 20 2 23 23 N 1.46961 * 109.36043 * 58.40156 * 22 21 20 24 24 C 1.46905 * 110.99761 * 176.81410 * 23 22 21 25 25 C 1.46952 * 110.88149 * 300.68104 * 23 22 21 26 26 C 1.46964 * 111.00121 * 57.82634 * 20 2 1 27 27 H 1.09001 * 109.46859 * 183.72493 * 1 2 3 28 28 H 1.08997 * 109.47083 * 303.72438 * 1 2 3 29 29 H 1.09000 * 109.47373 * 63.72872 * 1 2 3 30 30 H 0.96994 * 119.99829 * 180.02562 * 10 9 7 31 31 H 1.08996 * 109.47392 * 214.21535 * 15 6 4 32 32 H 1.09004 * 109.47447 * 334.21731 * 15 6 4 33 33 H 1.09006 * 109.47083 * 300.00453 * 16 15 6 34 34 H 1.09004 * 109.46970 * 59.99331 * 16 15 6 35 35 H 0.96699 * 116.99877 * 180.02562 * 19 17 16 36 36 H 1.09005 * 109.49069 * 296.78238 * 21 20 2 37 37 H 1.09006 * 109.48636 * 56.83955 * 21 20 2 38 38 H 1.09003 * 109.48587 * 298.43800 * 22 21 20 39 39 H 1.08992 * 109.50786 * 178.37798 * 22 21 20 40 40 H 1.08993 * 109.47107 * 183.79931 * 24 23 22 41 41 H 1.09001 * 109.46900 * 303.80001 * 24 23 22 42 42 H 1.08996 * 109.46963 * 63.79937 * 24 23 22 43 43 H 1.09005 * 109.49130 * 299.35412 * 25 23 22 44 44 H 1.08996 * 109.50989 * 179.30208 * 25 23 22 45 45 H 1.09000 * 109.48566 * 303.15435 * 26 20 2 46 46 H 1.09002 * 109.48801 * 63.21555 * 26 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.2447 -1.9042 1.1973 6 7 2.2456 -0.0193 2.3677 7 6 2.0908 1.3429 2.3814 8 1 2.5079 1.9418 1.5853 9 6 1.3971 1.9528 3.4194 10 7 0.9290 1.2291 4.4115 11 14 1.1301 3.8016 3.4048 12 1 0.3651 4.1817 2.1901 13 1 0.3684 4.2012 4.6152 14 1 2.4450 4.4916 3.3976 15 6 2.6428 -0.7236 3.5893 16 6 4.1681 -0.7158 3.7095 17 6 4.5767 -1.4398 4.9665 18 8 3.7344 -1.9138 5.6915 19 8 5.8764 -1.5579 5.2805 20 7 2.0196 -0.6925 -1.1994 21 6 3.4881 -0.7459 -1.2142 22 6 3.9549 -1.5421 -2.4351 23 7 3.4416 -0.9064 -3.6566 24 6 3.9313 -1.5989 -4.8561 25 6 1.9731 -0.8530 -3.6419 26 6 1.5063 -0.0568 -2.4210 27 1 -0.3633 -1.0255 0.0668 28 1 -0.3633 0.5705 0.8547 29 1 -0.3634 0.4549 -0.9215 30 1 0.4445 1.6549 5.1359 31 1 2.2076 -0.2240 4.4547 32 1 2.2871 -1.7531 3.5472 33 1 4.6034 -1.2155 2.8441 34 1 4.5239 0.3137 3.7516 35 1 6.0896 -2.0310 6.0964 36 1 3.8884 0.2667 -1.2657 37 1 3.8435 -1.2318 -0.3055 38 1 3.5772 -2.5625 -2.3699 39 1 5.0443 -1.5586 -2.4640 40 1 3.5919 -1.0685 -5.7458 41 1 5.0209 -1.6242 -4.8416 42 1 3.5443 -2.6177 -4.8708 43 1 1.5729 -1.8656 -3.5905 44 1 1.6174 -0.3672 -4.5505 45 1 0.4168 -0.0405 -2.3922 46 1 1.8840 0.9636 -2.4862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589342107.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:47 Heat of formation + Delta-G solvation = -102.953887 kcal Electronic energy + Delta-G solvation = -27918.445090 eV Core-core repulsion = 24036.667743 eV Total energy + Delta-G solvation = -3881.777347 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.82498 -39.49081 -38.17642 -35.82846 -35.39798 -34.68281 -31.92290 -31.33205 -30.74597 -29.94428 -27.20312 -25.30959 -24.78157 -23.60381 -23.14615 -21.71057 -20.27017 -19.50948 -19.08867 -17.71547 -16.87225 -16.37043 -15.95830 -15.80762 -15.41677 -14.97627 -14.74821 -14.61775 -14.51023 -14.36751 -13.71082 -13.57966 -13.47000 -13.00764 -12.57888 -12.50118 -12.32130 -12.07985 -12.01594 -11.73340 -11.50380 -11.35359 -11.16561 -11.10396 -11.03498 -11.02784 -11.00532 -10.65687 -10.46096 -10.42177 -10.29184 -10.05228 -9.97413 -9.13305 -8.46110 -8.29857 -7.76959 -7.53436 -6.32128 -4.28183 2.73157 3.08688 3.16165 3.17068 3.45689 3.84325 3.99440 4.03185 4.23218 4.83389 4.93316 5.05714 5.11310 5.30996 5.40575 5.52135 5.62230 5.64481 5.66692 5.73176 5.78000 5.82194 5.88843 5.92929 5.98732 6.06495 6.09973 6.13069 6.27466 6.30749 6.41977 6.44238 6.51843 6.83680 6.87040 6.96505 7.04921 7.07296 7.26592 7.48216 7.54140 7.64070 7.94054 8.32763 8.37109 9.02628 9.44835 9.87117 10.60761 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.011523 B = 0.004846 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.415749 B = 5777.157884 C = 7419.750872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.082 3.918 3 H 0.064 0.936 4 C 0.488 3.512 5 O -0.583 6.583 6 N -0.443 5.443 7 C -0.342 4.342 8 H 0.086 0.914 9 C 0.049 3.951 10 N -0.863 5.863 11 Si 0.916 3.084 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.273 1.273 15 C 0.112 3.888 16 C -0.120 4.120 17 C 0.483 3.517 18 O -0.514 6.514 19 O -0.526 6.526 20 N -0.520 5.520 21 C 0.059 3.941 22 C 0.061 3.939 23 N -0.547 5.547 24 C 0.026 3.974 25 C 0.059 3.941 26 C 0.054 3.946 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.272 0.728 31 H 0.135 0.865 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.400 0.600 36 H 0.035 0.965 37 H 0.089 0.911 38 H 0.043 0.957 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.024 0.976 43 H 0.041 0.959 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.734 -0.453 -9.651 10.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.029 4.029 3 H 0.082 0.918 4 C 0.276 3.724 5 O -0.466 6.466 6 N -0.162 5.162 7 C -0.470 4.470 8 H 0.103 0.897 9 C -0.157 4.157 10 N -0.500 5.500 11 Si 0.742 3.258 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.198 1.198 15 C -0.011 4.011 16 C -0.159 4.159 17 C 0.325 3.675 18 O -0.401 6.401 19 O -0.338 6.338 20 N -0.246 5.246 21 C -0.070 4.070 22 C -0.067 4.067 23 N -0.272 5.272 24 C -0.122 4.122 25 C -0.069 4.069 26 C -0.075 4.075 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.152 0.848 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.121 0.879 35 H 0.257 0.743 36 H 0.053 0.947 37 H 0.107 0.893 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.042 0.958 43 H 0.060 0.940 44 H 0.093 0.907 45 H 0.101 0.899 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.379 -0.930 -9.611 10.602 hybrid contribution 0.096 0.721 0.652 0.977 sum 4.475 -0.209 -8.959 10.016 Atomic orbital electron populations 1.21645 0.92958 1.02429 1.01792 1.21374 0.96699 0.96250 0.88536 0.91849 1.20306 0.79901 0.86778 0.85413 1.90543 1.55741 1.15294 1.85017 1.43359 1.58916 1.06636 1.07332 1.19298 1.35238 0.81280 1.11194 0.89668 1.25549 0.94501 0.99887 0.95744 1.69541 1.34668 1.35973 1.09786 0.86179 0.78808 0.82749 0.78066 1.19584 1.20771 1.19807 1.21584 0.88571 0.98146 0.92840 1.21838 1.01618 1.00871 0.91615 1.23843 0.79177 0.76886 0.87604 1.90695 1.51977 1.45774 1.51676 1.84597 1.29382 1.73024 1.46766 1.61908 1.08640 1.53109 1.00954 1.22141 0.87818 0.98804 0.98190 1.22144 0.99100 0.96581 0.88854 1.62191 1.09367 1.53150 1.02495 1.22320 1.00583 0.96372 0.92927 1.22150 0.87227 0.99592 0.97906 1.22214 1.00138 0.95958 0.89161 0.92258 0.90846 0.92802 0.91650 0.84751 0.92147 0.89126 0.87874 0.74263 0.94713 0.89326 0.93887 0.90761 0.91652 0.91596 0.95776 0.94049 0.90745 0.89900 0.94337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 9.00 37.16 0.33 -2.05 16 2 C 0.08 1.62 1.92 -68.87 -0.13 1.49 16 3 H 0.06 1.27 6.36 -51.93 -0.33 0.94 16 4 C 0.49 11.36 5.68 -10.98 -0.06 11.30 16 5 O -0.58 -14.92 15.12 5.55 0.08 -14.84 16 6 N -0.44 -10.57 2.53 -114.81 -0.29 -10.86 16 7 C -0.34 -8.08 8.31 -14.93 -0.12 -8.20 16 8 H 0.09 1.94 6.77 -52.49 -0.36 1.58 16 9 C 0.05 1.17 5.39 -17.47 -0.09 1.08 16 10 N -0.86 -21.98 10.75 55.50 0.60 -21.39 16 11 Si 0.92 18.58 29.55 -169.99 -5.02 13.56 16 12 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 13 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 14 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 15 C 0.11 2.67 4.37 -4.04 -0.02 2.65 16 16 C -0.12 -2.40 6.12 -27.88 -0.17 -2.57 16 17 C 0.48 9.05 8.33 36.01 0.30 9.35 16 18 O -0.51 -11.17 16.74 -18.75 -0.31 -11.48 16 19 O -0.53 -7.70 13.42 -39.25 -0.53 -8.23 16 20 N -0.52 -9.31 4.31 -227.87 -0.98 -10.29 16 21 C 0.06 1.01 5.27 -3.77 -0.02 0.99 16 22 C 0.06 0.89 5.62 -3.76 -0.02 0.87 16 23 N -0.55 -7.30 4.97 -242.76 -1.21 -8.50 16 24 C 0.03 0.28 9.60 60.07 0.58 0.85 16 25 C 0.06 0.77 5.62 -3.77 -0.02 0.75 16 26 C 0.05 0.79 5.27 -3.76 -0.02 0.77 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.05 0.81 6.10 -51.93 -0.32 0.50 16 30 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 31 H 0.14 3.50 5.11 -51.93 -0.27 3.24 16 32 H 0.06 1.55 7.32 -51.93 -0.38 1.17 16 33 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 34 H 0.10 1.99 8.14 -51.93 -0.42 1.56 16 35 H 0.40 3.91 9.10 45.56 0.41 4.32 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.74 6.24 -51.93 -0.32 1.41 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.63 8.13 -51.93 -0.42 0.20 16 42 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 43 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.08 1.13 6.01 -51.93 -0.31 0.81 16 46 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 366.36 15.07 5.52 5.52 Total: -1.00 -29.83 366.36 -8.11 -37.94 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -6.50 Total: 11.28 kcal Atomic # 6 Polarization: 16.77 SS G_CDS: 0.53 Total: 17.29 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -1.88 Total: -51.04 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -0.76 Total: -34.55 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.56 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.83 -8.11 -37.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589342107.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.013 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds