Wall clock time and date at job start Fri Apr 10 2020 18:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46858 * 2 1 4 4 C 1.50697 * 109.47180 * 120.00214 * 2 1 3 5 5 O 1.21291 * 120.00360 * 90.58837 * 4 2 1 6 6 N 1.34783 * 119.99781 * 270.59236 * 4 2 1 7 7 C 1.37102 * 119.99883 * 355.68121 * 6 4 2 8 8 H 1.08001 * 120.00097 * 314.59144 * 7 6 4 9 9 C 1.38949 * 119.99564 * 134.58730 * 7 6 4 10 10 N 1.31416 * 120.00331 * 2.32969 * 9 7 6 11 11 Si 1.86799 * 119.99833 * 182.32250 * 9 7 6 12 12 H 1.48497 * 109.47312 * 60.00083 * 11 9 7 13 13 H 1.48493 * 109.47213 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47147 * 300.00577 * 11 9 7 15 15 C 1.46494 * 119.99970 * 175.68197 * 6 4 2 16 16 C 1.53004 * 109.47353 * 94.21473 * 15 6 4 17 17 C 1.50699 * 109.47528 * 179.97438 * 16 15 6 18 18 O 1.20823 * 119.99622 * 0.02562 * 17 16 15 19 19 O 1.34227 * 119.99799 * 180.02562 * 17 16 15 20 20 N 1.46896 * 109.46921 * 239.99936 * 2 1 3 21 21 C 1.46958 * 111.00139 * 181.62221 * 20 2 1 22 22 C 1.53050 * 109.37009 * 176.81214 * 21 20 2 23 23 N 1.46961 * 109.36043 * 58.40156 * 22 21 20 24 24 C 1.46905 * 110.99761 * 176.81410 * 23 22 21 25 25 C 1.46952 * 110.88149 * 300.68104 * 23 22 21 26 26 C 1.46964 * 111.00121 * 57.82634 * 20 2 1 27 27 H 1.09001 * 109.46859 * 183.72493 * 1 2 3 28 28 H 1.08997 * 109.47083 * 303.72438 * 1 2 3 29 29 H 1.09000 * 109.47373 * 63.72872 * 1 2 3 30 30 H 0.96994 * 119.99829 * 180.02562 * 10 9 7 31 31 H 1.08996 * 109.47392 * 214.21535 * 15 6 4 32 32 H 1.09004 * 109.47447 * 334.21731 * 15 6 4 33 33 H 1.09006 * 109.47083 * 300.00453 * 16 15 6 34 34 H 1.09004 * 109.46970 * 59.99331 * 16 15 6 35 35 H 0.96699 * 116.99877 * 180.02562 * 19 17 16 36 36 H 1.09005 * 109.49069 * 296.78238 * 21 20 2 37 37 H 1.09006 * 109.48636 * 56.83955 * 21 20 2 38 38 H 1.09003 * 109.48587 * 298.43800 * 22 21 20 39 39 H 1.08992 * 109.50786 * 178.37798 * 22 21 20 40 40 H 1.08993 * 109.47107 * 183.79931 * 24 23 22 41 41 H 1.09001 * 109.46900 * 303.80001 * 24 23 22 42 42 H 1.08996 * 109.46963 * 63.79937 * 24 23 22 43 43 H 1.09005 * 109.49130 * 299.35412 * 25 23 22 44 44 H 1.08996 * 109.50989 * 179.30208 * 25 23 22 45 45 H 1.09000 * 109.48566 * 303.15435 * 26 20 2 46 46 H 1.09002 * 109.48801 * 63.21555 * 26 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.2447 -1.9042 1.1973 6 7 2.2456 -0.0193 2.3677 7 6 2.0908 1.3429 2.3814 8 1 2.5079 1.9418 1.5853 9 6 1.3971 1.9528 3.4194 10 7 0.9290 1.2291 4.4115 11 14 1.1301 3.8016 3.4048 12 1 0.3651 4.1817 2.1901 13 1 0.3684 4.2012 4.6152 14 1 2.4450 4.4916 3.3976 15 6 2.6428 -0.7236 3.5893 16 6 4.1681 -0.7158 3.7095 17 6 4.5767 -1.4398 4.9665 18 8 3.7344 -1.9138 5.6915 19 8 5.8764 -1.5579 5.2805 20 7 2.0196 -0.6925 -1.1994 21 6 3.4881 -0.7459 -1.2142 22 6 3.9549 -1.5421 -2.4351 23 7 3.4416 -0.9064 -3.6566 24 6 3.9313 -1.5989 -4.8561 25 6 1.9731 -0.8530 -3.6419 26 6 1.5063 -0.0568 -2.4210 27 1 -0.3633 -1.0255 0.0668 28 1 -0.3633 0.5705 0.8547 29 1 -0.3634 0.4549 -0.9215 30 1 0.4445 1.6549 5.1359 31 1 2.2076 -0.2240 4.4547 32 1 2.2871 -1.7531 3.5472 33 1 4.6034 -1.2155 2.8441 34 1 4.5239 0.3137 3.7516 35 1 6.0896 -2.0310 6.0964 36 1 3.8884 0.2667 -1.2657 37 1 3.8435 -1.2318 -0.3055 38 1 3.5772 -2.5625 -2.3699 39 1 5.0443 -1.5586 -2.4640 40 1 3.5919 -1.0685 -5.7458 41 1 5.0209 -1.6242 -4.8416 42 1 3.5443 -2.6177 -4.8708 43 1 1.5729 -1.8656 -3.5905 44 1 1.6174 -0.3672 -4.5505 45 1 0.4168 -0.0405 -2.3922 46 1 1.8840 0.9636 -2.4862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589342107.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:47 Heat of formation + Delta-G solvation = -125.287538 kcal Electronic energy + Delta-G solvation = -27919.413550 eV Core-core repulsion = 24036.667743 eV Total energy + Delta-G solvation = -3882.745807 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.39628 -40.97047 -39.63577 -37.28839 -36.88563 -36.34799 -33.75195 -32.86862 -32.05434 -31.41579 -28.34824 -27.13294 -26.37943 -24.89880 -24.36538 -23.15414 -21.81644 -20.99246 -20.66883 -19.23131 -18.51345 -18.04870 -17.54588 -17.27381 -16.96445 -16.22465 -16.10845 -15.98052 -15.90163 -15.72377 -15.25218 -15.08963 -14.93064 -14.45811 -14.22909 -13.98187 -13.67990 -13.54273 -13.25849 -13.10077 -12.87232 -12.84354 -12.71538 -12.67344 -12.55674 -12.53336 -12.22690 -12.19584 -12.06723 -11.84953 -11.76032 -11.64229 -11.54652 -10.95632 -10.25431 -9.45674 -9.36378 -9.13989 -8.16328 -6.18357 1.19982 1.48654 1.50484 1.59428 1.93812 2.11221 2.37262 2.74335 3.00389 3.07621 3.26063 3.91791 4.02607 4.06815 4.12429 4.18183 4.26339 4.30749 4.42925 4.45038 4.50187 4.51565 4.57723 4.64838 4.72135 4.77326 4.83281 4.86798 4.90475 4.96042 5.02207 5.03176 5.07031 5.12960 5.32934 5.37892 5.56001 5.69893 5.95915 5.98999 6.08361 6.18881 6.25275 6.45525 7.01048 7.16160 7.59869 8.02451 8.77176 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.011523 B = 0.004846 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.415749 B = 5777.157884 C = 7419.750872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.090 3.910 3 H 0.062 0.938 4 C 0.479 3.521 5 O -0.614 6.614 6 N -0.451 5.451 7 C -0.347 4.347 8 H 0.096 0.904 9 C 0.010 3.990 10 N -0.897 5.897 11 Si 0.981 3.019 12 H -0.261 1.261 13 H -0.288 1.288 14 H -0.264 1.264 15 C 0.116 3.884 16 C -0.112 4.112 17 C 0.494 3.506 18 O -0.549 6.549 19 O -0.508 6.508 20 N -0.533 5.533 21 C 0.062 3.938 22 C 0.070 3.930 23 N -0.554 5.554 24 C 0.027 3.973 25 C 0.062 3.938 26 C 0.052 3.948 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.271 0.729 31 H 0.115 0.885 32 H 0.029 0.971 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.426 0.574 36 H 0.033 0.967 37 H 0.057 0.943 38 H 0.028 0.972 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.024 0.976 43 H 0.033 0.967 44 H 0.103 0.897 45 H 0.095 0.905 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.510 1.052 -11.735 13.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.021 4.021 3 H 0.079 0.921 4 C 0.269 3.731 5 O -0.500 6.500 6 N -0.171 5.171 7 C -0.475 4.475 8 H 0.113 0.887 9 C -0.193 4.193 10 N -0.535 5.535 11 Si 0.804 3.196 12 H -0.185 1.185 13 H -0.214 1.214 14 H -0.189 1.189 15 C -0.008 4.008 16 C -0.151 4.151 17 C 0.338 3.662 18 O -0.439 6.439 19 O -0.322 6.322 20 N -0.259 5.259 21 C -0.066 4.066 22 C -0.058 4.058 23 N -0.279 5.279 24 C -0.121 4.121 25 C -0.066 4.066 26 C -0.075 4.075 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.132 0.868 32 H 0.047 0.953 33 H 0.113 0.887 34 H 0.131 0.869 35 H 0.287 0.713 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.046 0.954 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.043 0.957 43 H 0.051 0.949 44 H 0.121 0.879 45 H 0.113 0.887 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.195 0.575 -11.709 12.823 hybrid contribution -0.080 0.186 1.309 1.324 sum 5.115 0.761 -10.400 11.615 Atomic orbital electron populations 1.21585 0.91872 1.01627 1.02906 1.21254 0.97389 0.95557 0.87886 0.92051 1.20963 0.79249 0.86626 0.86310 1.90509 1.57054 1.16755 1.85674 1.43565 1.59018 1.07041 1.07430 1.19576 1.35265 0.81156 1.11471 0.88666 1.26324 0.93935 1.03979 0.95081 1.69704 1.35559 1.37736 1.10485 0.85174 0.78905 0.77537 0.77960 1.18541 1.21360 1.18903 1.21335 0.91135 0.95915 0.92409 1.21580 0.98912 1.01788 0.92797 1.23416 0.80046 0.76041 0.86705 1.90694 1.53304 1.47292 1.52645 1.84508 1.26477 1.72862 1.48309 1.61908 1.09042 1.53544 1.01397 1.22046 0.87615 0.98713 0.98235 1.22017 0.99971 0.95209 0.88633 1.62218 1.09568 1.53425 1.02727 1.22397 1.01213 0.96370 0.92126 1.22183 0.87131 0.99131 0.98132 1.22349 1.00836 0.96110 0.88240 0.93579 0.92609 0.89118 0.91873 0.86796 0.95261 0.88657 0.86950 0.71251 0.94854 0.92471 0.95359 0.89173 0.89817 0.90665 0.95737 0.94885 0.87857 0.88673 0.94120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.41 9.00 71.98 0.65 -3.76 16 2 C 0.09 3.57 1.92 44.17 0.08 3.65 16 3 H 0.06 2.44 6.36 -2.39 -0.02 2.42 16 4 C 0.48 23.03 5.68 87.65 0.50 23.53 16 5 O -0.61 -32.86 15.12 -3.06 -0.05 -32.90 16 6 N -0.45 -22.21 2.53 -635.54 -1.61 -23.81 16 7 C -0.35 -16.50 8.31 84.04 0.70 -15.80 16 8 H 0.10 4.27 6.77 -2.91 -0.02 4.25 16 9 C 0.01 0.45 5.39 84.93 0.46 0.91 16 10 N -0.90 -46.83 10.75 21.66 0.23 -46.59 16 11 Si 0.98 37.56 29.55 68.60 2.03 39.59 16 12 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 13 H -0.29 -11.22 7.11 99.48 0.71 -10.52 16 14 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 15 C 0.12 5.78 4.37 86.38 0.38 6.15 16 16 C -0.11 -4.54 6.12 29.85 0.18 -4.36 16 17 C 0.49 18.54 8.33 71.24 0.59 19.13 16 18 O -0.55 -24.36 16.74 21.97 0.37 -23.99 16 19 O -0.51 -13.98 13.42 -51.39 -0.69 -14.67 16 20 N -0.53 -18.82 4.31 -874.85 -3.77 -22.59 16 21 C 0.06 2.15 5.27 86.31 0.45 2.60 16 22 C 0.07 1.97 5.62 86.31 0.49 2.46 16 23 N -0.55 -13.45 4.97 -921.95 -4.58 -18.03 16 24 C 0.03 0.48 9.60 127.69 1.23 1.70 16 25 C 0.06 1.45 5.62 86.31 0.49 1.94 16 26 C 0.05 1.42 5.27 86.31 0.46 1.87 16 27 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.09 2.56 6.10 -2.39 -0.01 2.54 16 30 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 31 H 0.11 6.22 5.11 -2.39 -0.01 6.21 16 32 H 0.03 1.59 7.32 -2.39 -0.02 1.57 16 33 H 0.10 3.77 8.14 -2.38 -0.02 3.75 16 34 H 0.11 4.33 8.14 -2.39 -0.02 4.31 16 35 H 0.43 7.33 9.10 -74.06 -0.67 6.66 16 36 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.06 2.31 6.24 -2.38 -0.01 2.30 16 38 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.09 2.22 8.13 -2.39 -0.02 2.20 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16 42 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 44 H 0.10 1.84 8.14 -2.39 -0.02 1.83 16 45 H 0.10 2.32 6.01 -2.39 -0.01 2.31 16 46 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -66.50 366.36 -1.10 -67.61 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: 0.32 Total: 35.36 kcal Atomic # 6 Polarization: 33.39 SS G_CDS: 6.65 Total: 40.03 kcal Atomic # 7 Polarization: -101.30 SS G_CDS: -9.72 Total: -111.03 kcal Atomic # 8 Polarization: -71.19 SS G_CDS: -0.37 Total: -71.56 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Total: -66.50 -1.10 -67.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589342107.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.681 kcal (2) G-P(sol) polarization free energy of solvation -66.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds