Wall clock time and date at job start Fri Apr 10 2020 18:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47376 * 2 1 4 4 C 1.50705 * 109.47134 * 239.99810 * 2 1 3 5 5 O 1.21278 * 120.00190 * 260.61395 * 4 2 1 6 6 N 1.34776 * 119.99755 * 80.61467 * 4 2 1 7 7 C 1.46495 * 119.99943 * 180.02562 * 6 4 2 8 8 C 1.50699 * 109.47336 * 179.97438 * 7 6 4 9 9 O 1.20825 * 119.99923 * 0.02562 * 8 7 6 10 10 O 1.34230 * 120.00118 * 179.97438 * 8 7 6 11 11 N 1.46902 * 109.46867 * 120.00018 * 2 1 3 12 12 C 1.46893 * 111.00076 * 51.33729 * 11 2 1 13 13 C 1.52784 * 109.41993 * 187.10975 * 12 11 2 14 14 H 1.08996 * 109.45890 * 66.18532 * 13 12 11 15 15 C 1.53010 * 109.55571 * 186.60636 * 13 12 11 16 16 N 1.47078 * 108.77181 * 306.42557 * 13 12 11 17 17 C 1.36933 * 120.88232 * 231.12473 * 16 13 12 18 18 H 1.08005 * 120.00158 * 128.13806 * 17 16 13 19 19 C 1.38808 * 120.00157 * 308.14215 * 17 16 13 20 20 N 1.31624 * 120.00021 * 338.83078 * 19 17 16 21 21 Si 1.86801 * 120.00199 * 158.83070 * 19 17 16 22 22 H 1.48490 * 109.47277 * 269.99940 * 21 19 17 23 23 H 1.48503 * 109.46889 * 30.00233 * 21 19 17 24 24 H 1.48504 * 109.46889 * 149.99927 * 21 19 17 25 25 C 1.47079 * 118.23435 * 50.84801 * 16 13 12 26 26 H 1.08997 * 109.62856 * 68.99629 * 25 16 13 27 27 C 1.53003 * 109.62549 * 189.38078 * 25 16 13 28 28 C 1.46904 * 110.99465 * 175.63721 * 11 2 1 29 29 H 1.09005 * 109.47318 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47101 * 300.00088 * 1 2 3 31 31 H 1.09000 * 109.47103 * 60.00386 * 1 2 3 32 32 H 0.97000 * 120.00201 * 359.97438 * 6 4 2 33 33 H 1.09002 * 109.46921 * 299.99634 * 7 6 4 34 34 H 1.08997 * 109.47401 * 59.99566 * 7 6 4 35 35 H 0.96703 * 116.99647 * 179.97438 * 10 8 7 36 36 H 1.08997 * 109.49634 * 307.20789 * 12 11 2 37 37 H 1.09001 * 109.49742 * 67.26595 * 12 11 2 38 38 H 1.09000 * 109.46713 * 186.97052 * 15 13 12 39 39 H 1.08998 * 109.47239 * 306.97630 * 15 13 12 40 40 H 1.09000 * 109.46428 * 66.97386 * 15 13 12 41 41 H 0.96995 * 120.00538 * 175.08872 * 20 19 17 42 42 H 1.09002 * 109.46704 * 60.00508 * 27 25 16 43 43 H 1.09001 * 109.46651 * 180.02562 * 27 25 16 44 44 H 1.08996 * 109.47460 * 300.00033 * 27 25 16 45 45 H 1.08997 * 109.49453 * 52.78855 * 28 11 2 46 46 H 1.08999 * 109.49722 * 292.70351 * 28 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.3960 -1.8652 -1.1580 6 7 2.0775 -0.0626 -2.4114 7 6 2.5653 -0.7533 -3.6077 8 6 2.5138 0.1850 -4.7857 9 8 2.1114 1.3151 -4.6408 10 8 2.9159 -0.2342 -5.9958 11 7 2.0196 -0.6925 1.1995 12 6 1.3873 -2.0108 1.3412 13 6 1.7841 -2.6228 2.6837 14 1 1.3581 -2.0300 3.4931 15 6 1.2641 -4.0596 2.7652 16 7 3.2510 -2.6215 2.7894 17 6 3.9329 -3.7620 3.1201 18 1 4.7526 -4.0993 2.5029 19 6 3.5706 -4.4847 4.2484 20 7 2.8895 -3.9023 5.2124 21 14 4.0497 -6.2840 4.3988 22 1 2.9787 -7.1318 3.8164 23 1 5.3207 -6.5205 3.6681 24 1 4.2307 -6.6299 5.8316 25 6 3.9666 -1.3641 2.5244 26 1 3.7573 -0.6490 3.3199 27 6 5.4713 -1.6333 2.4581 28 6 3.4844 -0.8031 1.1823 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7863 0.8609 -2.4695 33 1 3.5932 -1.0780 -3.4460 34 1 1.9372 -1.6215 -3.8074 35 1 2.8641 0.4035 -6.7209 36 1 0.3038 -1.9013 1.2959 37 1 1.7210 -2.6630 0.5341 38 1 1.4386 -4.4527 3.7668 39 1 0.1955 -4.0720 2.5510 40 1 1.7881 -4.6774 2.0360 41 1 2.5748 -4.4237 5.9673 42 1 5.6784 -2.3433 1.6574 43 1 5.9990 -0.6999 2.2621 44 1 5.8084 -2.0483 3.4079 45 1 3.9217 0.1823 1.0219 46 1 3.7893 -1.4722 0.3777 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589397998.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:00 Heat of formation + Delta-G solvation = -81.101091 kcal Electronic energy + Delta-G solvation = -28076.703480 eV Core-core repulsion = 24195.873742 eV Total energy + Delta-G solvation = -3880.829739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.95650 -40.16547 -37.84315 -36.71580 -35.14796 -34.62966 -32.84255 -31.65106 -30.23885 -28.64641 -27.42704 -25.84786 -25.07741 -23.81068 -22.47440 -21.41549 -20.30385 -20.03276 -19.09832 -18.51430 -17.62517 -16.68059 -16.44274 -16.24036 -15.63150 -15.25830 -15.11626 -14.59132 -14.38228 -14.14408 -14.07537 -13.40143 -13.26750 -13.21746 -12.87066 -12.54210 -12.20057 -12.08520 -12.03896 -11.80612 -11.48393 -11.29937 -11.19294 -11.17066 -10.81065 -10.61046 -10.48357 -10.38327 -10.27354 -10.16630 -10.02020 -9.69454 -9.61966 -9.32300 -9.26902 -8.00616 -7.63571 -6.26858 -5.58754 -3.38945 1.64265 2.24711 2.60295 3.17743 3.40441 3.48332 3.50475 4.29670 4.54978 4.59577 4.80756 4.88084 5.05057 5.10740 5.21094 5.34182 5.43341 5.60693 5.82473 5.94550 6.00401 6.04413 6.07240 6.14644 6.20442 6.35701 6.50665 6.53520 6.60141 6.64792 6.73235 6.88292 6.98208 7.07683 7.20925 7.26594 7.31413 7.34134 7.58972 7.63960 7.75789 7.85079 7.98613 8.18807 8.72823 9.33741 9.88209 10.66732 11.29312 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.020759 B = 0.003546 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.497157 B = 7895.276052 C = 8170.290232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.066 3.934 3 H 0.099 0.901 4 C 0.488 3.512 5 O -0.516 6.516 6 N -0.731 5.731 7 C 0.125 3.875 8 C 0.480 3.520 9 O -0.513 6.513 10 O -0.510 6.510 11 N -0.502 5.502 12 C 0.022 3.978 13 C 0.201 3.799 14 H 0.031 0.969 15 C -0.141 4.141 16 N -0.577 5.577 17 C -0.255 4.255 18 H 0.051 0.949 19 C 0.034 3.966 20 N -0.874 5.874 21 Si 0.878 3.122 22 H -0.283 1.283 23 H -0.276 1.276 24 H -0.291 1.291 25 C 0.176 3.824 26 H 0.030 0.970 27 C -0.130 4.130 28 C 0.034 3.966 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.409 0.591 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.416 0.584 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.020 0.980 40 H 0.047 0.953 41 H 0.252 0.748 42 H 0.048 0.952 43 H 0.033 0.967 44 H 0.065 0.935 45 H 0.052 0.948 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.343 9.738 -17.657 20.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.047 4.047 3 H 0.117 0.883 4 C 0.274 3.726 5 O -0.390 6.390 6 N -0.390 5.390 7 C 0.000 4.000 8 C 0.322 3.678 9 O -0.402 6.402 10 O -0.321 6.321 11 N -0.224 5.224 12 C -0.107 4.107 13 C 0.095 3.905 14 H 0.048 0.952 15 C -0.199 4.199 16 N -0.301 5.301 17 C -0.385 4.385 18 H 0.068 0.932 19 C -0.168 4.168 20 N -0.514 5.514 21 Si 0.706 3.294 22 H -0.210 1.210 23 H -0.201 1.201 24 H -0.218 1.218 25 C 0.069 3.931 26 H 0.047 0.953 27 C -0.188 4.188 28 C -0.095 4.095 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.246 0.754 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.275 0.725 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.039 0.961 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.052 0.948 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.280 9.144 -16.593 19.227 hybrid contribution 0.201 -0.486 -1.281 1.385 sum -3.079 8.658 -17.874 20.098 Atomic orbital electron populations 1.21862 0.92165 1.03329 1.02693 1.22015 0.97304 0.99096 0.86259 0.88291 1.22680 0.77679 0.87731 0.84538 1.90740 1.46580 1.16979 1.84673 1.46191 1.68067 1.17496 1.07272 1.20569 1.04027 0.93844 0.81605 1.23360 0.72909 0.87245 0.84320 1.90730 1.43502 1.21039 1.84892 1.84508 1.78890 1.49327 1.19424 1.62482 1.07383 1.21999 1.30540 1.23134 0.97066 0.88666 1.01799 1.20162 0.84908 0.94227 0.91219 0.95174 1.21978 0.95944 0.97283 1.04732 1.43988 1.00309 1.05003 1.80828 1.18682 1.15739 1.00511 1.03542 0.93200 1.25432 0.98815 0.98541 0.93969 1.70209 1.39417 1.33864 1.07927 0.86712 0.78899 0.86963 0.76804 1.20997 1.20090 1.21760 1.20477 0.91303 0.89474 0.91840 0.95273 1.21697 0.95593 0.98900 1.02565 1.22893 0.86413 0.99084 1.01071 0.91410 0.90260 0.92257 0.75373 0.87050 0.87112 0.72492 0.92334 0.91783 0.89557 0.96113 0.93415 0.93805 0.93318 0.94799 0.91581 0.92916 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.66 37.16 0.32 -1.33 16 2 C 0.07 0.91 2.91 -68.86 -0.20 0.71 16 3 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 4 C 0.49 6.89 6.24 -10.98 -0.07 6.82 16 5 O -0.52 -9.39 12.09 5.56 0.07 -9.32 16 6 N -0.73 -7.80 5.53 -61.48 -0.34 -8.14 16 7 C 0.12 1.14 6.27 -5.20 -0.03 1.11 16 8 C 0.48 3.96 8.40 36.01 0.30 4.26 16 9 O -0.51 -5.46 16.43 -18.75 -0.31 -5.76 16 10 O -0.51 -3.01 13.42 -39.26 -0.53 -3.54 16 11 N -0.50 -9.06 4.69 -228.02 -1.07 -10.13 16 12 C 0.02 0.44 4.09 -3.94 -0.02 0.43 16 13 C 0.20 4.80 3.15 -67.72 -0.21 4.59 16 14 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 15 C -0.14 -3.36 7.94 37.16 0.29 -3.06 16 16 N -0.58 -14.67 2.83 -157.26 -0.45 -15.11 16 17 C -0.25 -6.96 6.80 -15.06 -0.10 -7.06 16 18 H 0.05 1.40 7.13 -52.48 -0.37 1.03 16 19 C 0.03 0.93 3.24 -17.43 -0.06 0.88 16 20 N -0.87 -25.11 11.83 55.49 0.66 -24.45 16 21 Si 0.88 21.44 29.61 -169.99 -5.03 16.41 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 C 0.18 3.93 3.66 -67.49 -0.25 3.69 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 27 C -0.13 -2.67 8.17 37.16 0.30 -2.36 16 28 C 0.03 0.66 4.34 -3.70 -0.02 0.65 16 29 H 0.07 0.87 6.16 -51.93 -0.32 0.55 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.41 3.83 7.44 -40.82 -0.30 3.53 16 33 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.42 0.67 9.10 45.56 0.41 1.08 16 36 H 0.06 1.07 5.76 -51.93 -0.30 0.77 16 37 H 0.06 1.43 5.67 -51.93 -0.29 1.13 16 38 H 0.09 2.26 4.92 -51.93 -0.26 2.00 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.05 1.17 7.70 -51.93 -0.40 0.77 16 41 H 0.25 7.00 8.32 -40.82 -0.34 6.66 16 42 H 0.05 1.02 7.60 -51.93 -0.39 0.63 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 1.48 7.65 -51.93 -0.40 1.08 16 45 H 0.05 0.89 8.11 -51.93 -0.42 0.47 16 46 H 0.05 1.07 6.01 -51.93 -0.31 0.76 16 LS Contribution 356.46 15.07 5.37 5.37 Total: -1.00 -33.50 356.46 -7.65 -41.16 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.30 Total: 4.20 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: 0.27 Total: 9.32 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: -1.20 Total: -57.82 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.77 Total: -18.62 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.50 -7.65 -41.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589397998.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.946 kcal (2) G-P(sol) polarization free energy of solvation -33.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds