Wall clock time and date at job start Fri Apr 10 2020 18:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47376 * 2 1 4 4 C 1.50705 * 109.47134 * 239.99810 * 2 1 3 5 5 O 1.21278 * 120.00190 * 260.61395 * 4 2 1 6 6 N 1.34776 * 119.99755 * 80.61467 * 4 2 1 7 7 C 1.46495 * 119.99943 * 180.02562 * 6 4 2 8 8 C 1.50699 * 109.47336 * 179.97438 * 7 6 4 9 9 O 1.20825 * 119.99923 * 0.02562 * 8 7 6 10 10 O 1.34230 * 120.00118 * 179.97438 * 8 7 6 11 11 N 1.46902 * 109.46867 * 120.00018 * 2 1 3 12 12 C 1.46893 * 111.00076 * 51.33729 * 11 2 1 13 13 C 1.52784 * 109.41993 * 187.10975 * 12 11 2 14 14 H 1.08996 * 109.45890 * 66.18532 * 13 12 11 15 15 C 1.53010 * 109.55571 * 186.60636 * 13 12 11 16 16 N 1.47078 * 108.77181 * 306.42557 * 13 12 11 17 17 C 1.36933 * 120.88232 * 231.12473 * 16 13 12 18 18 H 1.08005 * 120.00158 * 128.13806 * 17 16 13 19 19 C 1.38808 * 120.00157 * 308.14215 * 17 16 13 20 20 N 1.31624 * 120.00021 * 338.83078 * 19 17 16 21 21 Si 1.86801 * 120.00199 * 158.83070 * 19 17 16 22 22 H 1.48490 * 109.47277 * 269.99940 * 21 19 17 23 23 H 1.48503 * 109.46889 * 30.00233 * 21 19 17 24 24 H 1.48504 * 109.46889 * 149.99927 * 21 19 17 25 25 C 1.47079 * 118.23435 * 50.84801 * 16 13 12 26 26 H 1.08997 * 109.62856 * 68.99629 * 25 16 13 27 27 C 1.53003 * 109.62549 * 189.38078 * 25 16 13 28 28 C 1.46904 * 110.99465 * 175.63721 * 11 2 1 29 29 H 1.09005 * 109.47318 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47101 * 300.00088 * 1 2 3 31 31 H 1.09000 * 109.47103 * 60.00386 * 1 2 3 32 32 H 0.97000 * 120.00201 * 359.97438 * 6 4 2 33 33 H 1.09002 * 109.46921 * 299.99634 * 7 6 4 34 34 H 1.08997 * 109.47401 * 59.99566 * 7 6 4 35 35 H 0.96703 * 116.99647 * 179.97438 * 10 8 7 36 36 H 1.08997 * 109.49634 * 307.20789 * 12 11 2 37 37 H 1.09001 * 109.49742 * 67.26595 * 12 11 2 38 38 H 1.09000 * 109.46713 * 186.97052 * 15 13 12 39 39 H 1.08998 * 109.47239 * 306.97630 * 15 13 12 40 40 H 1.09000 * 109.46428 * 66.97386 * 15 13 12 41 41 H 0.96995 * 120.00538 * 175.08872 * 20 19 17 42 42 H 1.09002 * 109.46704 * 60.00508 * 27 25 16 43 43 H 1.09001 * 109.46651 * 180.02562 * 27 25 16 44 44 H 1.08996 * 109.47460 * 300.00033 * 27 25 16 45 45 H 1.08997 * 109.49453 * 52.78855 * 28 11 2 46 46 H 1.08999 * 109.49722 * 292.70351 * 28 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.3960 -1.8652 -1.1580 6 7 2.0775 -0.0626 -2.4114 7 6 2.5653 -0.7533 -3.6077 8 6 2.5138 0.1850 -4.7857 9 8 2.1114 1.3151 -4.6408 10 8 2.9159 -0.2342 -5.9958 11 7 2.0196 -0.6925 1.1995 12 6 1.3873 -2.0108 1.3412 13 6 1.7841 -2.6228 2.6837 14 1 1.3581 -2.0300 3.4931 15 6 1.2641 -4.0596 2.7652 16 7 3.2510 -2.6215 2.7894 17 6 3.9329 -3.7620 3.1201 18 1 4.7526 -4.0993 2.5029 19 6 3.5706 -4.4847 4.2484 20 7 2.8895 -3.9023 5.2124 21 14 4.0497 -6.2840 4.3988 22 1 2.9787 -7.1318 3.8164 23 1 5.3207 -6.5205 3.6681 24 1 4.2307 -6.6299 5.8316 25 6 3.9666 -1.3641 2.5244 26 1 3.7573 -0.6490 3.3199 27 6 5.4713 -1.6333 2.4581 28 6 3.4844 -0.8031 1.1823 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7863 0.8609 -2.4695 33 1 3.5932 -1.0780 -3.4460 34 1 1.9372 -1.6215 -3.8074 35 1 2.8641 0.4035 -6.7209 36 1 0.3038 -1.9013 1.2959 37 1 1.7210 -2.6630 0.5341 38 1 1.4386 -4.4527 3.7668 39 1 0.1955 -4.0720 2.5510 40 1 1.7881 -4.6774 2.0360 41 1 2.5748 -4.4237 5.9673 42 1 5.6784 -2.3433 1.6574 43 1 5.9990 -0.6999 2.2621 44 1 5.8084 -2.0483 3.4079 45 1 3.9217 0.1823 1.0219 46 1 3.7893 -1.4722 0.3777 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589397998.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:59 Heat of formation + Delta-G solvation = -107.958979 kcal Electronic energy + Delta-G solvation = -28077.868126 eV Core-core repulsion = 24195.873742 eV Total energy + Delta-G solvation = -3881.994384 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.83375 -41.15595 -39.35494 -37.35803 -36.63803 -35.64837 -34.62015 -33.44651 -31.69205 -29.55011 -29.24497 -27.47206 -26.81883 -25.19399 -23.70902 -22.37577 -21.91781 -21.23580 -20.90190 -19.19870 -18.68195 -17.94623 -17.49765 -17.37829 -16.96386 -16.70477 -16.31229 -16.11197 -15.95878 -15.76161 -15.23064 -15.01180 -14.70725 -14.30529 -13.93575 -13.83690 -13.70976 -13.41675 -13.29458 -13.07266 -12.99448 -12.77739 -12.65963 -12.57197 -12.43478 -12.27641 -12.10928 -11.99694 -11.89287 -11.85498 -11.51541 -11.42129 -11.27012 -11.10957 -10.29335 -10.08304 -9.08159 -8.34775 -7.63968 -5.51953 1.00641 1.43605 1.46956 1.53042 1.53760 1.55824 2.38827 2.51583 2.96080 3.26316 3.63039 3.74395 4.00073 4.13500 4.18310 4.20626 4.30337 4.31733 4.40409 4.61203 4.65143 4.69452 4.76235 4.82178 4.88481 4.93228 4.94480 4.98364 5.05467 5.09194 5.24080 5.29464 5.32814 5.46765 5.50542 5.54651 5.73069 5.82129 5.83600 6.14645 6.20405 6.42618 6.60484 6.84468 7.15852 7.28919 7.88189 8.61226 9.18130 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.020759 B = 0.003546 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.497157 B = 7895.276052 C = 8170.290232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.063 3.937 3 H 0.129 0.871 4 C 0.491 3.509 5 O -0.561 6.561 6 N -0.715 5.715 7 C 0.121 3.879 8 C 0.494 3.506 9 O -0.538 6.538 10 O -0.504 6.504 11 N -0.510 5.510 12 C 0.042 3.958 13 C 0.198 3.802 14 H 0.000 1.000 15 C -0.133 4.133 16 N -0.593 5.593 17 C -0.258 4.258 18 H 0.038 0.962 19 C -0.002 4.002 20 N -0.905 5.905 21 Si 0.931 3.069 22 H -0.280 1.280 23 H -0.272 1.272 24 H -0.292 1.292 25 C 0.165 3.835 26 H 0.010 0.990 27 C -0.118 4.118 28 C 0.050 3.950 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.418 0.582 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.436 0.564 36 H 0.079 0.921 37 H 0.045 0.955 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.033 0.967 41 H 0.250 0.750 42 H 0.039 0.961 43 H 0.071 0.929 44 H 0.039 0.961 45 H 0.082 0.918 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.739 11.152 -19.930 23.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.049 4.049 3 H 0.146 0.854 4 C 0.278 3.722 5 O -0.438 6.438 6 N -0.373 5.373 7 C -0.004 4.004 8 C 0.337 3.663 9 O -0.428 6.428 10 O -0.318 6.318 11 N -0.233 5.233 12 C -0.087 4.087 13 C 0.092 3.908 14 H 0.018 0.982 15 C -0.191 4.191 16 N -0.318 5.318 17 C -0.389 4.389 18 H 0.055 0.945 19 C -0.201 4.201 20 N -0.547 5.547 21 Si 0.759 3.241 22 H -0.207 1.207 23 H -0.196 1.196 24 H -0.218 1.218 25 C 0.059 3.941 26 H 0.028 0.972 27 C -0.176 4.176 28 C -0.079 4.079 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.257 0.743 33 H 0.130 0.870 34 H 0.134 0.866 35 H 0.299 0.701 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.052 0.948 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.090 0.910 44 H 0.058 0.942 45 H 0.100 0.900 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.673 10.603 -18.939 22.013 hybrid contribution 0.334 -0.843 -0.685 1.136 sum -3.340 9.759 -19.623 22.169 Atomic orbital electron populations 1.21860 0.90328 1.02851 1.04526 1.22195 0.98754 0.99542 0.84398 0.85353 1.22541 0.77180 0.87062 0.85460 1.90739 1.48822 1.18886 1.85391 1.45936 1.66755 1.17703 1.06910 1.20633 1.04135 0.94160 0.81492 1.22992 0.72318 0.86356 0.84661 1.90731 1.44834 1.21887 1.85358 1.84461 1.78088 1.49990 1.19277 1.62387 1.06511 1.20643 1.33726 1.22753 0.98231 0.89442 0.98307 1.20138 0.84200 0.94033 0.92441 0.98175 1.21845 0.97588 0.97062 1.02626 1.44251 1.01071 1.05571 1.80947 1.18730 1.15544 1.01453 1.03155 0.94467 1.25932 0.99049 1.01492 0.93601 1.70297 1.40915 1.34980 1.08477 0.85868 0.78706 0.83057 0.76515 1.20660 1.19633 1.21830 1.20664 0.92248 0.88044 0.93151 0.97228 1.21570 0.94902 1.00381 1.00727 1.22620 0.87497 0.99857 0.97975 0.92968 0.89772 0.89129 0.74260 0.86995 0.86627 0.70093 0.90310 0.93683 0.92055 0.93332 0.94789 0.94063 0.94178 0.91038 0.94197 0.89965 0.94807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 8.66 71.98 0.62 -2.15 16 2 C 0.06 1.57 2.91 44.17 0.13 1.69 16 3 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 4 C 0.49 12.85 6.24 87.66 0.55 13.40 16 5 O -0.56 -19.96 12.09 -3.02 -0.04 -20.00 16 6 N -0.71 -13.40 5.53 -466.80 -2.58 -15.98 16 7 C 0.12 1.96 6.27 85.63 0.54 2.49 16 8 C 0.49 6.90 8.40 71.24 0.60 7.50 16 9 O -0.54 -10.04 16.43 21.97 0.36 -9.68 16 10 O -0.50 -4.56 13.42 -51.42 -0.69 -5.25 16 11 N -0.51 -17.76 4.69 -875.33 -4.10 -21.86 16 12 C 0.04 1.66 4.09 86.23 0.35 2.01 16 13 C 0.20 9.65 3.15 44.81 0.14 9.79 16 14 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 15 C -0.13 -6.44 7.94 71.99 0.57 -5.87 16 16 N -0.59 -30.96 2.83 -651.46 -1.84 -32.80 16 17 C -0.26 -14.51 6.80 84.03 0.57 -13.94 16 18 H 0.04 2.17 7.13 -2.91 -0.02 2.15 16 19 C 0.00 -0.09 3.24 84.86 0.27 0.18 16 20 N -0.90 -53.52 11.83 21.65 0.26 -53.26 16 21 Si 0.93 44.98 29.61 68.60 2.03 47.01 16 22 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 23 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 25 C 0.16 7.45 3.66 44.96 0.16 7.62 16 26 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 27 C -0.12 -4.86 8.17 71.98 0.59 -4.28 16 28 C 0.05 1.86 4.34 86.38 0.38 2.23 16 29 H 0.05 1.22 6.16 -2.38 -0.01 1.21 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.09 1.26 8.14 -2.39 -0.02 1.25 16 32 H 0.42 6.46 7.44 -92.71 -0.69 5.77 16 33 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.44 0.10 9.10 -74.05 -0.67 -0.57 16 36 H 0.08 2.79 5.76 -2.39 -0.01 2.78 16 37 H 0.05 2.02 5.67 -2.39 -0.01 2.00 16 38 H 0.06 3.29 4.92 -2.39 -0.01 3.28 16 39 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.03 1.68 7.70 -2.39 -0.02 1.67 16 41 H 0.25 14.29 8.32 -92.71 -0.77 13.51 16 42 H 0.04 1.69 7.60 -2.39 -0.02 1.67 16 43 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.04 1.81 7.65 -2.39 -0.02 1.80 16 45 H 0.08 2.57 8.11 -2.39 -0.02 2.55 16 46 H 0.03 1.41 6.01 -2.39 -0.01 1.39 16 Total: -1.00 -74.74 356.46 -1.48 -76.22 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -0.35 Total: 14.90 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: 5.47 Total: 20.69 kcal Atomic # 7 Polarization: -115.63 SS G_CDS: -8.27 Total: -123.90 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -0.37 Total: -34.93 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -74.74 -1.48 -76.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589397998.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.736 kcal (2) G-P(sol) polarization free energy of solvation -74.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds