Wall clock time and date at job start Fri Apr 10 2020 18:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.78379 * 2 1 4 4 C 1.52783 * 109.55481 * 239.76929 * 2 1 3 5 5 N 1.46899 * 109.42218 * 186.61459 * 4 2 1 6 6 C 1.46900 * 110.99963 * 187.11591 * 5 4 2 7 7 C 1.52994 * 109.47330 * 45.69184 * 6 5 4 8 8 C 1.50706 * 109.47290 * 179.97438 * 7 6 5 9 9 O 1.21284 * 119.99474 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99893 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99548 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.46700 * 179.97438 * 11 10 8 13 13 O 1.20822 * 120.00311 * 0.02562 * 12 11 10 14 14 O 1.34239 * 119.99726 * 180.02562 * 12 11 10 15 15 C 1.46894 * 111.27489 * 62.95969 * 5 4 2 16 16 C 1.53239 * 109.34064 * 296.90254 * 15 5 4 17 17 H 1.09002 * 109.78776 * 294.01936 * 16 15 5 18 18 C 1.53000 * 109.62879 * 173.53547 * 16 15 5 19 19 N 1.47077 * 108.52624 * 53.82573 * 16 15 5 20 20 C 1.36935 * 120.88487 * 128.81248 * 19 16 15 21 21 H 1.07994 * 120.00537 * 308.48862 * 20 19 16 22 22 C 1.38815 * 119.99706 * 128.48517 * 20 19 16 23 23 N 1.31620 * 120.00031 * 338.25307 * 22 20 19 24 24 Si 1.86796 * 120.00046 * 158.25478 * 22 20 19 25 25 H 1.48501 * 109.46984 * 269.99766 * 24 22 20 26 26 H 1.48496 * 109.47134 * 29.99688 * 24 22 20 27 27 H 1.48500 * 109.47215 * 149.99684 * 24 22 20 28 28 H 1.08997 * 109.47157 * 307.66292 * 1 2 3 29 29 H 1.09000 * 109.47503 * 67.66646 * 1 2 3 30 30 H 1.09003 * 109.47319 * 187.66482 * 1 2 3 31 31 H 1.08997 * 109.56541 * 66.55500 * 4 2 1 32 32 H 1.08998 * 109.36163 * 306.53828 * 4 2 1 33 33 H 1.09006 * 109.47226 * 165.69558 * 6 5 4 34 34 H 1.09004 * 109.46821 * 285.69044 * 6 5 4 35 35 H 1.08997 * 109.47407 * 300.00199 * 7 6 5 36 36 H 1.09004 * 109.47283 * 60.00143 * 7 6 5 37 37 H 0.96997 * 120.00273 * 0.02562 * 10 8 7 38 38 H 1.08997 * 109.47332 * 300.00282 * 11 10 8 39 39 H 1.09004 * 109.46912 * 59.99953 * 11 10 8 40 40 H 0.96698 * 116.99378 * 180.02562 * 14 12 11 41 41 H 1.08993 * 109.49702 * 176.93768 * 15 5 4 42 42 H 1.09003 * 109.48782 * 56.85520 * 15 5 4 43 43 H 1.09004 * 109.47199 * 300.96705 * 18 16 15 44 44 H 1.09005 * 109.47212 * 60.96828 * 18 16 15 45 45 H 1.09001 * 109.47144 * 180.97042 * 18 16 15 46 46 H 0.96996 * 120.00129 * 175.06966 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0414 -0.7249 -1.2439 5 7 3.5017 -0.8626 -1.1633 6 6 4.0494 -1.4025 -2.4149 7 6 3.4216 -0.6718 -3.6034 8 6 3.9840 -1.2253 -4.8874 9 8 4.8057 -2.1167 -4.8549 10 7 3.5738 -0.7296 -6.0717 11 6 4.1201 -1.2680 -7.3199 12 6 3.5018 -0.5483 -8.4905 13 8 2.6886 0.3251 -8.3017 14 8 3.8545 -0.8775 -9.7432 15 6 3.8964 -1.6901 -0.0156 16 6 3.4619 -0.9994 1.2814 17 1 4.0199 -0.0720 1.4104 18 6 3.7240 -1.9264 2.4701 19 7 2.0240 -0.7028 1.1939 20 6 1.1671 -1.0761 2.1946 21 1 1.1625 -2.0963 2.5491 22 6 0.3044 -0.1433 2.7536 23 7 0.5736 1.1416 2.6590 24 14 -1.2385 -0.7115 3.6400 25 1 -2.3610 -0.8011 2.6719 26 1 -0.9987 -2.0463 4.2448 27 1 -1.5825 0.2613 4.7080 28 1 -0.3633 0.6279 0.8135 29 1 -0.3634 0.3905 -0.9506 30 1 -0.3634 -1.0185 0.1371 31 1 1.7785 -0.1528 -2.1337 32 1 1.5854 -1.7133 -1.2992 33 1 5.1300 -1.2596 -2.4301 34 1 3.8227 -2.4666 -2.4815 35 1 2.3411 -0.8147 -3.5883 36 1 3.6483 0.3923 -3.5368 37 1 2.9168 -0.0164 -6.0976 38 1 5.2006 -1.1256 -7.3348 39 1 3.8929 -2.3321 -7.3867 40 1 3.4311 -0.3877 -10.4615 41 1 4.9788 -1.8181 -0.0146 42 1 3.4145 -2.6652 -0.0875 43 1 3.1703 -2.8556 2.3352 44 1 4.7901 -2.1446 2.5326 45 1 3.3982 -1.4396 3.3893 46 1 -0.0634 1.7960 2.9859 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594508141.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:07 Heat of formation + Delta-G solvation = -91.634564 kcal Electronic energy + Delta-G solvation = -26776.556710 eV Core-core repulsion = 22895.270206 eV Total energy + Delta-G solvation = -3881.286504 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.99599 -39.82249 -38.42432 -36.82761 -35.27739 -34.82067 -32.92234 -31.67945 -30.66482 -28.70294 -27.49009 -25.85970 -25.30650 -23.67182 -22.27046 -21.16013 -20.58427 -19.98406 -19.06668 -18.63870 -17.88770 -16.83640 -16.50779 -16.23121 -15.95396 -15.66461 -15.09388 -14.55568 -14.52843 -14.30273 -14.14547 -13.64268 -13.35709 -13.31599 -13.15367 -12.72542 -12.51416 -12.13954 -12.09895 -11.67453 -11.57153 -11.33925 -11.26547 -11.15104 -10.85869 -10.75671 -10.60442 -10.42520 -10.36240 -10.08326 -10.06936 -9.75788 -9.71837 -9.58391 -9.37588 -8.08446 -7.76285 -6.35661 -5.66824 -3.46951 1.55342 2.11092 2.41125 2.99826 3.34834 3.43675 3.45067 4.28974 4.48102 4.55949 4.72511 4.72979 4.88403 5.05219 5.15690 5.27500 5.37283 5.59339 5.81549 5.85717 5.89863 5.93846 5.99269 6.06842 6.20679 6.25443 6.28883 6.38880 6.48285 6.53074 6.64621 6.74293 6.84580 6.96949 7.08782 7.20411 7.24484 7.26414 7.56592 7.57090 7.70495 7.78462 7.90851 7.92730 8.64799 9.25604 9.80147 10.58612 11.21739 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.022693 B = 0.002684 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.573310 B =10431.191046 C =11323.272295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.198 3.802 3 H 0.035 0.965 4 C 0.035 3.965 5 N -0.535 5.535 6 C 0.072 3.928 7 C -0.142 4.142 8 C 0.524 3.476 9 O -0.537 6.537 10 N -0.730 5.730 11 C 0.127 3.873 12 C 0.478 3.522 13 O -0.510 6.510 14 O -0.510 6.510 15 C 0.051 3.949 16 C 0.172 3.828 17 H 0.032 0.968 18 C -0.130 4.130 19 N -0.579 5.579 20 C -0.260 4.260 21 H 0.052 0.948 22 C 0.035 3.965 23 N -0.872 5.872 24 Si 0.878 3.122 25 H -0.283 1.283 26 H -0.276 1.276 27 H -0.291 1.291 28 H 0.086 0.914 29 H 0.021 0.979 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.026 0.974 33 H 0.077 0.923 34 H 0.035 0.965 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.414 0.586 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.417 0.583 41 H 0.061 0.939 42 H 0.028 0.972 43 H 0.047 0.953 44 H 0.035 0.965 45 H 0.065 0.935 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.968 -2.958 -20.154 21.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.092 3.908 3 H 0.053 0.947 4 C -0.095 4.095 5 N -0.259 5.259 6 C -0.056 4.056 7 C -0.182 4.182 8 C 0.312 3.688 9 O -0.412 6.412 10 N -0.389 5.389 11 C 0.002 3.998 12 C 0.320 3.680 13 O -0.398 6.398 14 O -0.322 6.322 15 C -0.079 4.079 16 C 0.066 3.934 17 H 0.050 0.950 18 C -0.188 4.188 19 N -0.304 5.304 20 C -0.390 4.390 21 H 0.069 0.931 22 C -0.167 4.167 23 N -0.511 5.511 24 Si 0.706 3.294 25 H -0.210 1.210 26 H -0.201 1.201 27 H -0.217 1.217 28 H 0.104 0.896 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.251 0.749 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.277 0.723 41 H 0.079 0.921 42 H 0.046 0.954 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.084 0.916 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.683 -2.958 -19.553 20.875 hybrid contribution -1.877 -0.271 -0.430 1.945 sum 4.806 -3.228 -19.983 20.805 Atomic orbital electron populations 1.21985 0.95877 1.02172 1.00009 1.20189 0.92651 0.93966 0.83985 0.94719 1.22915 0.86599 0.99426 1.00511 1.62012 1.11805 1.50292 1.01796 1.21806 0.99707 0.96176 0.87944 1.21845 1.02475 1.02948 0.90944 1.20899 0.81190 0.81967 0.84787 1.90722 1.32999 1.30030 1.87495 1.45869 1.47027 1.41783 1.04204 1.20556 1.00018 0.98934 0.80308 1.23292 0.79288 0.80955 0.84497 1.90758 1.32401 1.30830 1.85774 1.84488 1.67161 1.63898 1.16673 1.22673 0.98685 0.94436 0.92079 1.20543 0.87374 0.95065 0.90452 0.94987 1.21705 0.98038 0.99540 0.99550 1.44037 1.00740 1.68163 1.17448 1.18680 1.15473 0.92272 1.12543 0.93081 1.25450 1.00319 0.95219 0.95724 1.70216 1.33496 0.99970 1.47466 0.86716 0.84722 0.78455 0.79502 1.20967 1.20068 1.21692 0.89565 0.95965 0.93403 0.91843 0.95593 0.90478 0.94716 0.88034 0.87543 0.74859 0.86886 0.86946 0.72322 0.92098 0.95409 0.93365 0.94589 0.91566 0.93712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 7.93 37.16 0.29 -2.88 16 2 C 0.20 4.48 3.16 -67.72 -0.21 4.27 16 3 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 4 C 0.03 0.64 4.31 -3.94 -0.02 0.63 16 5 N -0.53 -9.48 4.78 -234.62 -1.12 -10.60 16 6 C 0.07 1.07 4.56 -3.83 -0.02 1.05 16 7 C -0.14 -1.68 4.95 -27.88 -0.14 -1.81 16 8 C 0.52 6.09 7.83 -10.98 -0.09 6.01 16 9 O -0.54 -7.92 15.98 5.55 0.09 -7.83 16 10 N -0.73 -6.53 5.53 -61.47 -0.34 -6.87 16 11 C 0.13 0.90 6.27 -5.19 -0.03 0.87 16 12 C 0.48 3.33 8.40 36.00 0.30 3.63 16 13 O -0.51 -5.03 16.43 -18.75 -0.31 -5.34 16 14 O -0.51 -2.35 13.42 -39.28 -0.53 -2.88 16 15 C 0.05 0.94 4.87 -3.70 -0.02 0.93 16 16 C 0.17 3.72 3.66 -67.49 -0.25 3.48 16 17 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 18 C -0.13 -2.58 8.17 37.16 0.30 -2.28 16 19 N -0.58 -14.12 2.83 -157.27 -0.45 -14.56 16 20 C -0.26 -6.83 6.79 -15.06 -0.10 -6.93 16 21 H 0.05 1.38 7.14 -52.49 -0.37 1.00 16 22 C 0.03 0.93 3.22 -17.43 -0.06 0.88 16 23 N -0.87 -24.44 11.87 55.49 0.66 -23.78 16 24 Si 0.88 20.80 29.61 -169.99 -5.03 15.77 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H 0.09 2.16 4.98 -51.93 -0.26 1.90 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 1.08 7.68 -51.93 -0.40 0.69 16 31 H 0.06 1.01 5.73 -51.93 -0.30 0.71 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 34 H 0.03 0.55 8.04 -51.93 -0.42 0.13 16 35 H 0.10 1.14 6.18 -51.93 -0.32 0.82 16 36 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.41 3.40 7.44 -40.82 -0.30 3.10 16 38 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.42 0.25 9.10 45.56 0.41 0.66 16 41 H 0.06 1.02 8.11 -51.93 -0.42 0.60 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.96 7.60 -51.93 -0.39 0.56 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.07 1.44 7.65 -51.93 -0.40 1.04 16 46 H 0.25 6.86 8.32 -40.82 -0.34 6.52 16 LS Contribution 365.20 15.07 5.50 5.50 Total: -1.00 -32.67 365.20 -8.08 -40.75 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.53 Total: 2.02 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -0.03 Total: 7.83 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -1.25 Total: -55.82 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.75 Total: -16.05 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.67 -8.08 -40.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594508141.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.887 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds