Wall clock time and date at job start Fri Apr 10 2020 18:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.78379 * 2 1 4 4 C 1.52783 * 109.55481 * 239.76929 * 2 1 3 5 5 N 1.46899 * 109.42218 * 186.61459 * 4 2 1 6 6 C 1.46900 * 110.99963 * 187.11591 * 5 4 2 7 7 C 1.52994 * 109.47330 * 45.69184 * 6 5 4 8 8 C 1.50706 * 109.47290 * 179.97438 * 7 6 5 9 9 O 1.21284 * 119.99474 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99893 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99548 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.46700 * 179.97438 * 11 10 8 13 13 O 1.20822 * 120.00311 * 0.02562 * 12 11 10 14 14 O 1.34239 * 119.99726 * 180.02562 * 12 11 10 15 15 C 1.46894 * 111.27489 * 62.95969 * 5 4 2 16 16 C 1.53239 * 109.34064 * 296.90254 * 15 5 4 17 17 H 1.09002 * 109.78776 * 294.01936 * 16 15 5 18 18 C 1.53000 * 109.62879 * 173.53547 * 16 15 5 19 19 N 1.47077 * 108.52624 * 53.82573 * 16 15 5 20 20 C 1.36935 * 120.88487 * 128.81248 * 19 16 15 21 21 H 1.07994 * 120.00537 * 308.48862 * 20 19 16 22 22 C 1.38815 * 119.99706 * 128.48517 * 20 19 16 23 23 N 1.31620 * 120.00031 * 338.25307 * 22 20 19 24 24 Si 1.86796 * 120.00046 * 158.25478 * 22 20 19 25 25 H 1.48501 * 109.46984 * 269.99766 * 24 22 20 26 26 H 1.48496 * 109.47134 * 29.99688 * 24 22 20 27 27 H 1.48500 * 109.47215 * 149.99684 * 24 22 20 28 28 H 1.08997 * 109.47157 * 307.66292 * 1 2 3 29 29 H 1.09000 * 109.47503 * 67.66646 * 1 2 3 30 30 H 1.09003 * 109.47319 * 187.66482 * 1 2 3 31 31 H 1.08997 * 109.56541 * 66.55500 * 4 2 1 32 32 H 1.08998 * 109.36163 * 306.53828 * 4 2 1 33 33 H 1.09006 * 109.47226 * 165.69558 * 6 5 4 34 34 H 1.09004 * 109.46821 * 285.69044 * 6 5 4 35 35 H 1.08997 * 109.47407 * 300.00199 * 7 6 5 36 36 H 1.09004 * 109.47283 * 60.00143 * 7 6 5 37 37 H 0.96997 * 120.00273 * 0.02562 * 10 8 7 38 38 H 1.08997 * 109.47332 * 300.00282 * 11 10 8 39 39 H 1.09004 * 109.46912 * 59.99953 * 11 10 8 40 40 H 0.96698 * 116.99378 * 180.02562 * 14 12 11 41 41 H 1.08993 * 109.49702 * 176.93768 * 15 5 4 42 42 H 1.09003 * 109.48782 * 56.85520 * 15 5 4 43 43 H 1.09004 * 109.47199 * 300.96705 * 18 16 15 44 44 H 1.09005 * 109.47212 * 60.96828 * 18 16 15 45 45 H 1.09001 * 109.47144 * 180.97042 * 18 16 15 46 46 H 0.96996 * 120.00129 * 175.06966 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0414 -0.7249 -1.2439 5 7 3.5017 -0.8626 -1.1633 6 6 4.0494 -1.4025 -2.4149 7 6 3.4216 -0.6718 -3.6034 8 6 3.9840 -1.2253 -4.8874 9 8 4.8057 -2.1167 -4.8549 10 7 3.5738 -0.7296 -6.0717 11 6 4.1201 -1.2680 -7.3199 12 6 3.5018 -0.5483 -8.4905 13 8 2.6886 0.3251 -8.3017 14 8 3.8545 -0.8775 -9.7432 15 6 3.8964 -1.6901 -0.0156 16 6 3.4619 -0.9994 1.2814 17 1 4.0199 -0.0720 1.4104 18 6 3.7240 -1.9264 2.4701 19 7 2.0240 -0.7028 1.1939 20 6 1.1671 -1.0761 2.1946 21 1 1.1625 -2.0963 2.5491 22 6 0.3044 -0.1433 2.7536 23 7 0.5736 1.1416 2.6590 24 14 -1.2385 -0.7115 3.6400 25 1 -2.3610 -0.8011 2.6719 26 1 -0.9987 -2.0463 4.2448 27 1 -1.5825 0.2613 4.7080 28 1 -0.3633 0.6279 0.8135 29 1 -0.3634 0.3905 -0.9506 30 1 -0.3634 -1.0185 0.1371 31 1 1.7785 -0.1528 -2.1337 32 1 1.5854 -1.7133 -1.2992 33 1 5.1300 -1.2596 -2.4301 34 1 3.8227 -2.4666 -2.4815 35 1 2.3411 -0.8147 -3.5883 36 1 3.6483 0.3923 -3.5368 37 1 2.9168 -0.0164 -6.0976 38 1 5.2006 -1.1256 -7.3348 39 1 3.8929 -2.3321 -7.3867 40 1 3.4311 -0.3877 -10.4615 41 1 4.9788 -1.8181 -0.0146 42 1 3.4145 -2.6652 -0.0875 43 1 3.1703 -2.8556 2.3352 44 1 4.7901 -2.1446 2.5326 45 1 3.3982 -1.4396 3.3893 46 1 -0.0634 1.7960 2.9859 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594508141.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:06 Heat of formation + Delta-G solvation = -117.137675 kcal Electronic energy + Delta-G solvation = -26777.662608 eV Core-core repulsion = 22895.270206 eV Total energy + Delta-G solvation = -3882.392402 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.60874 -40.73683 -39.91141 -37.33987 -36.81542 -35.64501 -34.62268 -33.39719 -31.98032 -29.69850 -29.09104 -27.45068 -26.91812 -25.18667 -23.07618 -22.26008 -22.01074 -21.22427 -20.80267 -19.22031 -18.65910 -18.11717 -17.43546 -17.31845 -16.98025 -16.62755 -16.57538 -16.10052 -16.01266 -15.82002 -15.33113 -15.02050 -14.71974 -14.36194 -14.26224 -13.85968 -13.68572 -13.62436 -13.32315 -13.18901 -13.01168 -12.65551 -12.64180 -12.57511 -12.39842 -12.26905 -12.10084 -12.05953 -11.85586 -11.84161 -11.49997 -11.43276 -11.12086 -11.04053 -10.33720 -10.08641 -9.20049 -8.36386 -7.65055 -5.52459 1.02892 1.44897 1.48995 1.52704 1.54365 1.55067 2.34875 2.52032 3.05059 3.26421 3.62313 3.77380 3.91746 4.10675 4.17067 4.22748 4.28076 4.33651 4.36755 4.55501 4.58449 4.61380 4.68043 4.79503 4.85669 4.90128 4.94227 4.99706 5.00853 5.04372 5.07222 5.19633 5.28627 5.49141 5.50029 5.55876 5.73929 5.79467 5.86319 6.21930 6.29470 6.34489 6.60248 6.84894 7.08576 7.28855 7.87335 8.60600 9.17850 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.022693 B = 0.002684 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.573310 B =10431.191046 C =11323.272295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.194 3.806 3 H 0.003 0.997 4 C 0.048 3.952 5 N -0.543 5.543 6 C 0.078 3.922 7 C -0.137 4.137 8 C 0.530 3.470 9 O -0.571 6.571 10 N -0.720 5.720 11 C 0.122 3.878 12 C 0.490 3.510 13 O -0.542 6.542 14 O -0.504 6.504 15 C 0.061 3.939 16 C 0.163 3.837 17 H 0.008 0.992 18 C -0.120 4.120 19 N -0.596 5.596 20 C -0.260 4.260 21 H 0.043 0.957 22 C -0.002 4.002 23 N -0.905 5.905 24 Si 0.931 3.069 25 H -0.278 1.278 26 H -0.271 1.271 27 H -0.296 1.296 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.038 0.962 31 H 0.095 0.905 32 H 0.020 0.980 33 H 0.078 0.922 34 H 0.027 0.973 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.419 0.581 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.435 0.565 41 H 0.083 0.917 42 H 0.022 0.978 43 H 0.045 0.955 44 H 0.069 0.931 45 H 0.038 0.962 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.214 -3.739 -22.270 23.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.088 3.912 3 H 0.021 0.979 4 C -0.081 4.081 5 N -0.267 5.267 6 C -0.050 4.050 7 C -0.177 4.177 8 C 0.318 3.682 9 O -0.450 6.450 10 N -0.377 5.377 11 C -0.002 4.002 12 C 0.333 3.667 13 O -0.432 6.432 14 O -0.318 6.318 15 C -0.068 4.068 16 C 0.057 3.943 17 H 0.026 0.974 18 C -0.178 4.178 19 N -0.321 5.321 20 C -0.391 4.391 21 H 0.061 0.939 22 C -0.201 4.201 23 N -0.546 5.546 24 Si 0.759 3.241 25 H -0.204 1.204 26 H -0.196 1.196 27 H -0.222 1.222 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.113 0.887 32 H 0.038 0.962 33 H 0.096 0.904 34 H 0.045 0.955 35 H 0.129 0.871 36 H 0.138 0.862 37 H 0.257 0.743 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.299 0.701 41 H 0.101 0.899 42 H 0.041 0.959 43 H 0.064 0.936 44 H 0.088 0.912 45 H 0.057 0.943 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.926 -3.744 -21.728 23.110 hybrid contribution -1.877 -0.015 0.150 1.883 sum 5.049 -3.759 -21.578 22.477 Atomic orbital electron populations 1.21857 0.95776 1.01034 1.00648 1.20184 0.92905 0.92735 0.85335 0.97889 1.22683 0.87068 0.98889 0.99418 1.61964 1.11277 1.50607 1.02875 1.21753 0.99801 0.95958 0.87483 1.21764 1.02727 1.03261 0.89954 1.20725 0.80714 0.81474 0.85321 1.90716 1.34678 1.31645 1.87951 1.45743 1.46452 1.41292 1.04234 1.20702 1.00539 0.99344 0.79624 1.23128 0.78423 0.80091 0.85049 1.90756 1.33914 1.32289 1.86287 1.84449 1.66975 1.63912 1.16426 1.22474 0.99829 0.93597 0.90921 1.20687 0.85829 0.94739 0.93004 0.97404 1.21588 1.00169 0.98527 0.97488 1.44332 1.01751 1.68153 1.17848 1.18769 1.15730 0.91829 1.12724 0.93943 1.25960 1.02481 0.95144 0.96553 1.70309 1.34268 1.00862 1.49201 0.85868 0.81958 0.77882 0.78404 1.20422 1.19609 1.22248 0.92427 0.92748 0.94262 0.88669 0.96162 0.90388 0.95498 0.87066 0.86230 0.74254 0.85891 0.86076 0.70149 0.89909 0.95949 0.93602 0.91172 0.94262 0.94088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.97 7.93 71.98 0.57 -5.40 16 2 C 0.19 8.78 3.16 44.81 0.14 8.92 16 3 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 4 C 0.05 1.72 4.31 86.23 0.37 2.09 16 5 N -0.54 -18.41 4.78 -896.21 -4.28 -22.69 16 6 C 0.08 2.15 4.56 86.30 0.39 2.55 16 7 C -0.14 -2.88 4.95 29.85 0.15 -2.74 16 8 C 0.53 11.17 7.83 87.66 0.69 11.85 16 9 O -0.57 -15.87 15.98 -3.04 -0.05 -15.92 16 10 N -0.72 -11.26 5.53 -466.77 -2.58 -13.84 16 11 C 0.12 1.48 6.27 85.63 0.54 2.01 16 12 C 0.49 5.77 8.40 71.23 0.60 6.37 16 13 O -0.54 -9.75 16.43 21.98 0.36 -9.39 16 14 O -0.50 -3.39 13.42 -51.51 -0.69 -4.08 16 15 C 0.06 2.20 4.87 86.38 0.42 2.63 16 16 C 0.16 7.09 3.66 44.96 0.16 7.25 16 17 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 18 C -0.12 -4.72 8.17 71.98 0.59 -4.13 16 19 N -0.60 -29.38 2.83 -651.49 -1.85 -31.22 16 20 C -0.26 -13.86 6.79 84.03 0.57 -13.29 16 21 H 0.04 2.32 7.14 -2.91 -0.02 2.30 16 22 C 0.00 -0.11 3.22 84.86 0.27 0.16 16 23 N -0.90 -52.00 11.87 21.65 0.26 -51.74 16 24 Si 0.93 43.28 29.61 68.60 2.03 45.31 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 26 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 27 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 28 H 0.06 2.90 4.98 -2.39 -0.01 2.89 16 29 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.04 1.76 7.68 -2.39 -0.02 1.74 16 31 H 0.10 2.75 5.73 -2.39 -0.01 2.74 16 32 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.08 2.16 8.10 -2.38 -0.02 2.14 16 34 H 0.03 0.80 8.04 -2.38 -0.02 0.78 16 35 H 0.11 2.14 6.18 -2.39 -0.01 2.12 16 36 H 0.12 2.24 8.14 -2.38 -0.02 2.22 16 37 H 0.42 5.92 7.44 -92.71 -0.69 5.23 16 38 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.44 -0.57 9.10 -74.06 -0.67 -1.25 16 41 H 0.08 2.61 8.11 -2.39 -0.02 2.59 16 42 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.04 1.80 7.60 -2.39 -0.02 1.78 16 44 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 45 H 0.04 1.72 7.65 -2.39 -0.02 1.71 16 46 H 0.25 13.92 8.32 -92.71 -0.77 13.15 16 Total: -1.00 -71.33 365.20 -1.70 -73.03 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -0.36 Total: 12.27 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: 5.46 Total: 18.27 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -8.45 Total: -119.50 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.38 Total: -29.39 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -71.33 -1.70 -73.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594508141.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.105 kcal (2) G-P(sol) polarization free energy of solvation -71.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds