Wall clock time and date at job start Fri Apr 10 2020 18:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.78217 * 2 1 4 4 C 1.53240 * 109.62431 * 120.47688 * 2 1 3 5 5 N 1.46903 * 109.33742 * 65.88402 * 4 2 1 6 6 C 1.46902 * 110.99737 * 187.25276 * 5 4 2 7 7 C 1.52993 * 109.47156 * 169.99931 * 6 5 4 8 8 C 1.50705 * 109.47429 * 179.97438 * 7 6 5 9 9 O 1.21277 * 119.99736 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00134 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99957 * 180.02562 * 10 8 7 12 12 C 1.50693 * 109.47133 * 180.02562 * 11 10 8 13 13 O 1.20831 * 120.00398 * 359.97438 * 12 11 10 14 14 O 1.34237 * 120.00147 * 180.02562 * 12 11 10 15 15 C 1.46894 * 111.26974 * 63.10266 * 5 4 2 16 16 C 1.53236 * 109.34109 * 296.89410 * 15 5 4 17 17 H 1.08997 * 109.62974 * 294.12046 * 16 15 5 18 18 C 1.53001 * 109.78842 * 173.63707 * 16 15 5 19 19 N 1.47073 * 109.63015 * 239.50946 * 2 1 3 20 20 C 1.36936 * 120.88351 * 111.49835 * 19 2 1 21 21 H 1.08002 * 119.99593 * 51.69074 * 20 19 2 22 22 C 1.38806 * 120.00094 * 231.68525 * 20 19 2 23 23 N 1.31623 * 120.00233 * 205.81335 * 22 20 19 24 24 Si 1.86803 * 119.99880 * 25.82145 * 22 20 19 25 25 H 1.48497 * 109.47173 * 94.76216 * 24 22 20 26 26 H 1.48505 * 109.46890 * 214.76007 * 24 22 20 27 27 H 1.48492 * 109.46987 * 334.75709 * 24 22 20 28 28 H 1.08998 * 109.47451 * 299.52397 * 1 2 3 29 29 H 1.09001 * 109.46818 * 59.52100 * 1 2 3 30 30 H 1.08999 * 109.47333 * 179.51950 * 1 2 3 31 31 H 1.09005 * 109.49673 * 305.92364 * 4 2 1 32 32 H 1.09002 * 109.51382 * 185.85159 * 4 2 1 33 33 H 1.08999 * 109.47573 * 49.99351 * 6 5 4 34 34 H 1.09007 * 109.47238 * 289.99783 * 6 5 4 35 35 H 1.09002 * 109.47474 * 60.00044 * 7 6 5 36 36 H 1.08996 * 109.47312 * 299.99770 * 7 6 5 37 37 H 0.97001 * 119.99672 * 0.02562 * 10 8 7 38 38 H 1.08994 * 109.47075 * 59.99628 * 11 10 8 39 39 H 1.09007 * 109.47216 * 299.99973 * 11 10 8 40 40 H 0.96698 * 116.99846 * 180.02562 * 14 12 11 41 41 H 1.09007 * 109.49188 * 56.85474 * 15 5 4 42 42 H 1.09001 * 109.49228 * 176.93327 * 15 5 4 43 43 H 1.09003 * 109.46884 * 293.06419 * 18 16 15 44 44 H 1.08990 * 109.47281 * 53.06960 * 18 16 15 45 45 H 1.09007 * 109.46838 * 173.07218 * 18 16 15 46 46 H 0.97000 * 120.00416 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0447 -0.7321 1.2440 5 7 1.6746 -2.1513 1.1611 6 6 1.9977 -2.8534 2.4104 7 6 1.3789 -4.2523 2.3839 8 6 1.7108 -4.9728 3.6653 9 8 2.3763 -4.4214 4.5161 10 7 1.2672 -6.2296 3.8661 11 6 1.5894 -6.9297 5.1120 12 6 0.9801 -8.3077 5.0858 13 8 0.3417 -8.6679 4.1253 14 8 1.1456 -9.1347 6.1301 15 6 2.3147 -2.8026 0.0105 16 6 1.8111 -2.1554 -1.2840 17 1 0.7482 -2.3626 -1.4075 18 6 2.5860 -2.7153 -2.4785 19 7 2.0241 -0.7029 -1.1937 20 6 2.6659 -0.0231 -2.1943 21 1 3.4977 0.6245 -1.9597 22 6 2.2475 -0.1666 -3.5100 23 7 3.0959 0.0339 -4.4961 24 14 0.4800 -0.6441 -3.8812 25 1 -0.3225 0.5809 -4.1268 26 1 0.4440 -1.5096 -5.0874 27 1 -0.0863 -1.3833 -2.7245 28 1 -0.3634 0.5064 0.8942 29 1 -0.3633 0.5213 -0.8857 30 1 -0.3634 -1.0276 -0.0086 31 1 1.5990 -0.2914 2.1358 32 1 3.1297 -0.6416 1.2968 33 1 1.5962 -2.2944 3.2557 34 1 3.0799 -2.9366 2.5111 35 1 1.7805 -4.8114 1.5387 36 1 0.2968 -4.1692 2.2833 37 1 0.7346 -6.6704 3.1858 38 1 1.1882 -6.3706 5.9572 39 1 2.6716 -7.0132 5.2124 40 1 0.7364 -10.0086 6.0672 41 1 3.3960 -2.6833 0.0801 42 1 2.0649 -3.8636 0.0078 43 1 3.6260 -2.3942 -2.4197 44 1 2.5404 -3.8041 -2.4631 45 1 2.1435 -2.3461 -3.4039 46 1 2.8036 -0.0667 -5.4155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594508142.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:10 Heat of formation + Delta-G solvation = -90.673151 kcal Electronic energy + Delta-G solvation = -26923.486280 eV Core-core repulsion = 23042.241465 eV Total energy + Delta-G solvation = -3881.244814 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.03033 -39.85574 -38.65518 -36.86303 -35.31393 -34.85663 -32.89714 -31.77636 -30.91394 -28.85345 -27.97606 -26.14478 -25.12673 -23.41254 -22.35867 -21.45918 -20.93296 -20.49153 -18.69560 -18.47760 -17.92536 -16.88405 -16.72072 -16.45801 -15.99735 -15.76110 -15.27339 -14.66693 -14.62850 -14.25033 -14.08119 -13.82813 -13.56152 -13.32609 -13.13998 -12.74829 -12.58103 -12.22986 -12.17396 -12.02077 -11.80147 -11.64335 -11.30368 -11.30237 -11.10404 -10.77177 -10.63015 -10.58155 -10.42034 -10.16911 -9.91506 -9.83230 -9.69787 -9.62452 -9.35099 -8.30160 -7.89169 -6.43551 -6.02962 -3.52514 1.51755 2.07355 2.36726 2.95466 3.39787 3.51038 3.59324 4.19391 4.50938 4.56146 4.67138 4.69355 4.84818 4.96638 5.01962 5.15272 5.27597 5.55576 5.67565 5.80339 5.81506 5.84355 5.85607 5.92859 6.08249 6.10659 6.16121 6.20653 6.31684 6.44705 6.48613 6.55113 6.61543 6.75776 6.92323 7.04200 7.06571 7.18780 7.21079 7.39560 7.50996 7.60634 7.87786 8.12231 8.55140 9.09012 9.72648 10.31192 11.11238 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.024067 B = 0.002756 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.119478 B =10158.898859 C =10622.564461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.166 3.834 3 H 0.071 0.929 4 C 0.052 3.948 5 N -0.534 5.534 6 C 0.072 3.928 7 C -0.136 4.136 8 C 0.524 3.476 9 O -0.536 6.536 10 N -0.730 5.730 11 C 0.127 3.873 12 C 0.478 3.522 13 O -0.510 6.510 14 O -0.510 6.510 15 C 0.044 3.956 16 C 0.169 3.831 17 H 0.039 0.961 18 C -0.135 4.135 19 N -0.594 5.594 20 C -0.277 4.277 21 H 0.067 0.933 22 C 0.060 3.940 23 N -0.890 5.890 24 Si 0.857 3.143 25 H -0.294 1.294 26 H -0.298 1.298 27 H -0.251 1.251 28 H 0.037 0.963 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.031 0.969 33 H 0.077 0.923 34 H 0.037 0.963 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.413 0.587 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.417 0.583 41 H 0.033 0.967 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.032 0.968 45 H 0.060 0.940 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.834 -15.616 18.650 24.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.060 3.940 3 H 0.089 0.911 4 C -0.077 4.077 5 N -0.258 5.258 6 C -0.057 4.057 7 C -0.176 4.176 8 C 0.311 3.689 9 O -0.412 6.412 10 N -0.389 5.389 11 C 0.002 3.998 12 C 0.320 3.680 13 O -0.398 6.398 14 O -0.322 6.322 15 C -0.085 4.085 16 C 0.063 3.937 17 H 0.057 0.943 18 C -0.193 4.193 19 N -0.318 5.318 20 C -0.406 4.406 21 H 0.084 0.916 22 C -0.142 4.142 23 N -0.529 5.529 24 Si 0.685 3.315 25 H -0.221 1.221 26 H -0.226 1.226 27 H -0.175 1.175 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.251 0.749 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.277 0.723 41 H 0.051 0.949 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.051 0.949 45 H 0.078 0.922 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.776 -14.935 18.763 24.453 hybrid contribution -0.715 -1.138 -0.633 1.486 sum -5.491 -16.073 18.130 24.844 Atomic orbital electron populations 1.22132 0.98311 1.01409 0.99356 1.20776 0.92037 0.95066 0.86161 0.91114 1.22569 0.98055 0.87628 0.99463 1.61881 1.59218 1.02781 1.01939 1.21755 0.98278 0.92398 0.93285 1.21670 1.04353 0.97195 0.94355 1.20895 0.78411 0.80264 0.89321 1.90725 1.38359 1.66286 1.45867 1.45869 1.57321 1.15980 1.19718 1.20556 1.02265 0.86685 0.90321 1.23292 0.77301 0.87682 0.79740 1.90758 1.38465 1.76154 1.34455 1.84487 1.73043 1.30354 1.44310 1.22758 0.96567 0.97136 0.92078 1.20825 0.96810 0.84765 0.91332 0.94322 1.21865 1.02302 0.96751 0.98369 1.44398 1.66831 1.01058 1.19509 1.18460 1.10411 1.26596 0.85091 0.91576 1.25829 0.96711 0.95738 0.95971 1.69956 1.33902 1.49661 0.99356 0.87286 0.88325 0.78075 0.77832 1.22109 1.22559 1.17481 0.94390 0.93764 0.92481 0.91733 0.95059 0.90460 0.94487 0.88379 0.87670 0.74882 0.86892 0.86913 0.72300 0.94862 0.92028 0.91246 0.94860 0.92160 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.21 37.16 0.34 -2.50 16 2 C 0.17 3.31 3.32 -67.49 -0.22 3.08 16 3 H 0.07 1.44 7.95 -51.93 -0.41 1.03 16 4 C 0.05 0.89 5.01 -3.70 -0.02 0.87 16 5 N -0.53 -8.56 4.13 -234.32 -0.97 -9.53 16 6 C 0.07 0.97 4.25 -3.83 -0.02 0.96 16 7 C -0.14 -1.45 5.63 -27.88 -0.16 -1.61 16 8 C 0.52 5.69 7.83 -10.98 -0.09 5.61 16 9 O -0.54 -7.58 15.98 5.56 0.09 -7.49 16 10 N -0.73 -6.08 5.53 -61.48 -0.34 -6.42 16 11 C 0.13 0.85 6.27 -5.20 -0.03 0.81 16 12 C 0.48 3.13 8.40 36.00 0.30 3.43 16 13 O -0.51 -4.81 16.43 -18.75 -0.31 -5.12 16 14 O -0.51 -2.18 13.42 -39.27 -0.53 -2.71 16 15 C 0.04 0.76 4.76 -3.71 -0.02 0.74 16 16 C 0.17 3.52 2.04 -67.49 -0.14 3.38 16 17 H 0.04 0.85 5.96 -51.93 -0.31 0.55 16 18 C -0.14 -2.90 7.84 37.16 0.29 -2.61 16 19 N -0.59 -13.67 1.97 -157.01 -0.31 -13.98 16 20 C -0.28 -7.49 8.71 -15.06 -0.13 -7.62 16 21 H 0.07 1.98 8.06 -52.49 -0.42 1.55 16 22 C 0.06 1.67 3.76 -17.43 -0.07 1.61 16 23 N -0.89 -26.19 13.97 55.49 0.78 -25.42 16 24 Si 0.86 21.54 25.42 -169.99 -4.32 17.22 16 25 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 26 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 27 H -0.25 -6.03 5.18 56.52 0.29 -5.74 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.08 7.06 -51.93 -0.37 0.72 16 31 H 0.06 0.97 7.99 -51.93 -0.41 0.56 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.05 7.93 -51.93 -0.41 0.64 16 34 H 0.04 0.55 8.08 -51.93 -0.42 0.13 16 35 H 0.10 0.99 6.40 -51.93 -0.33 0.65 16 36 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.41 3.13 7.44 -40.82 -0.30 2.83 16 38 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.42 0.11 9.10 45.56 0.41 0.53 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.91 6.16 -51.93 -0.32 0.59 16 43 H 0.07 1.62 7.69 -51.93 -0.40 1.22 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 1.44 3.78 -51.92 -0.20 1.24 16 46 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 360.30 15.07 5.43 5.43 Total: -1.00 -33.44 360.30 -6.95 -40.39 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.52 Total: 1.48 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 0.05 Total: 6.15 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.84 Total: -55.35 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.75 Total: -15.32 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.32 Total: 17.22 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.44 -6.95 -40.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594508142.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.285 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds