Wall clock time and date at job start Fri Apr 10 2020 18:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.78217 * 2 1 4 4 C 1.53240 * 109.62431 * 120.47688 * 2 1 3 5 5 N 1.46903 * 109.33742 * 65.88402 * 4 2 1 6 6 C 1.46902 * 110.99737 * 187.25276 * 5 4 2 7 7 C 1.52993 * 109.47156 * 169.99931 * 6 5 4 8 8 C 1.50705 * 109.47429 * 179.97438 * 7 6 5 9 9 O 1.21277 * 119.99736 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00134 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99957 * 180.02562 * 10 8 7 12 12 C 1.50693 * 109.47133 * 180.02562 * 11 10 8 13 13 O 1.20831 * 120.00398 * 359.97438 * 12 11 10 14 14 O 1.34237 * 120.00147 * 180.02562 * 12 11 10 15 15 C 1.46894 * 111.26974 * 63.10266 * 5 4 2 16 16 C 1.53236 * 109.34109 * 296.89410 * 15 5 4 17 17 H 1.08997 * 109.62974 * 294.12046 * 16 15 5 18 18 C 1.53001 * 109.78842 * 173.63707 * 16 15 5 19 19 N 1.47073 * 109.63015 * 239.50946 * 2 1 3 20 20 C 1.36936 * 120.88351 * 111.49835 * 19 2 1 21 21 H 1.08002 * 119.99593 * 51.69074 * 20 19 2 22 22 C 1.38806 * 120.00094 * 231.68525 * 20 19 2 23 23 N 1.31623 * 120.00233 * 205.81335 * 22 20 19 24 24 Si 1.86803 * 119.99880 * 25.82145 * 22 20 19 25 25 H 1.48497 * 109.47173 * 94.76216 * 24 22 20 26 26 H 1.48505 * 109.46890 * 214.76007 * 24 22 20 27 27 H 1.48492 * 109.46987 * 334.75709 * 24 22 20 28 28 H 1.08998 * 109.47451 * 299.52397 * 1 2 3 29 29 H 1.09001 * 109.46818 * 59.52100 * 1 2 3 30 30 H 1.08999 * 109.47333 * 179.51950 * 1 2 3 31 31 H 1.09005 * 109.49673 * 305.92364 * 4 2 1 32 32 H 1.09002 * 109.51382 * 185.85159 * 4 2 1 33 33 H 1.08999 * 109.47573 * 49.99351 * 6 5 4 34 34 H 1.09007 * 109.47238 * 289.99783 * 6 5 4 35 35 H 1.09002 * 109.47474 * 60.00044 * 7 6 5 36 36 H 1.08996 * 109.47312 * 299.99770 * 7 6 5 37 37 H 0.97001 * 119.99672 * 0.02562 * 10 8 7 38 38 H 1.08994 * 109.47075 * 59.99628 * 11 10 8 39 39 H 1.09007 * 109.47216 * 299.99973 * 11 10 8 40 40 H 0.96698 * 116.99846 * 180.02562 * 14 12 11 41 41 H 1.09007 * 109.49188 * 56.85474 * 15 5 4 42 42 H 1.09001 * 109.49228 * 176.93327 * 15 5 4 43 43 H 1.09003 * 109.46884 * 293.06419 * 18 16 15 44 44 H 1.08990 * 109.47281 * 53.06960 * 18 16 15 45 45 H 1.09007 * 109.46838 * 173.07218 * 18 16 15 46 46 H 0.97000 * 120.00416 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0447 -0.7321 1.2440 5 7 1.6746 -2.1513 1.1611 6 6 1.9977 -2.8534 2.4104 7 6 1.3789 -4.2523 2.3839 8 6 1.7108 -4.9728 3.6653 9 8 2.3763 -4.4214 4.5161 10 7 1.2672 -6.2296 3.8661 11 6 1.5894 -6.9297 5.1120 12 6 0.9801 -8.3077 5.0858 13 8 0.3417 -8.6679 4.1253 14 8 1.1456 -9.1347 6.1301 15 6 2.3147 -2.8026 0.0105 16 6 1.8111 -2.1554 -1.2840 17 1 0.7482 -2.3626 -1.4075 18 6 2.5860 -2.7153 -2.4785 19 7 2.0241 -0.7029 -1.1937 20 6 2.6659 -0.0231 -2.1943 21 1 3.4977 0.6245 -1.9597 22 6 2.2475 -0.1666 -3.5100 23 7 3.0959 0.0339 -4.4961 24 14 0.4800 -0.6441 -3.8812 25 1 -0.3225 0.5809 -4.1268 26 1 0.4440 -1.5096 -5.0874 27 1 -0.0863 -1.3833 -2.7245 28 1 -0.3634 0.5064 0.8942 29 1 -0.3633 0.5213 -0.8857 30 1 -0.3634 -1.0276 -0.0086 31 1 1.5990 -0.2914 2.1358 32 1 3.1297 -0.6416 1.2968 33 1 1.5962 -2.2944 3.2557 34 1 3.0799 -2.9366 2.5111 35 1 1.7805 -4.8114 1.5387 36 1 0.2968 -4.1692 2.2833 37 1 0.7346 -6.6704 3.1858 38 1 1.1882 -6.3706 5.9572 39 1 2.6716 -7.0132 5.2124 40 1 0.7364 -10.0086 6.0672 41 1 3.3960 -2.6833 0.0801 42 1 2.0649 -3.8636 0.0078 43 1 3.6260 -2.3942 -2.4197 44 1 2.5404 -3.8041 -2.4631 45 1 2.1435 -2.3461 -3.4039 46 1 2.8036 -0.0667 -5.4155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594508142.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:09 Heat of formation + Delta-G solvation = -117.344010 kcal Electronic energy + Delta-G solvation = -26924.642815 eV Core-core repulsion = 23042.241465 eV Total energy + Delta-G solvation = -3882.401350 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.59387 -40.72251 -40.05526 -37.33519 -36.77307 -35.62937 -34.52253 -33.60563 -32.11589 -30.05866 -29.21358 -27.68483 -26.53513 -25.00941 -23.26916 -22.65552 -22.20160 -21.36697 -20.23137 -19.21230 -18.68815 -18.46316 -17.44388 -17.35922 -17.06749 -16.61978 -16.58755 -16.19070 -15.86969 -15.70044 -15.40493 -15.06719 -14.70305 -14.52532 -14.33829 -13.97485 -13.83382 -13.73669 -13.55207 -13.19998 -13.08600 -12.81986 -12.66247 -12.64364 -12.36570 -12.26178 -12.15783 -11.92235 -11.85066 -11.74614 -11.52168 -11.42859 -11.09146 -11.04702 -10.39260 -10.31915 -9.25403 -8.33057 -8.18497 -5.65808 1.03205 1.37187 1.45156 1.55669 1.55947 1.57288 2.35858 2.46898 3.00138 3.07155 3.44521 3.80857 3.95292 4.12926 4.18702 4.21009 4.23607 4.28427 4.36196 4.51174 4.54298 4.59326 4.64104 4.70120 4.83117 4.89031 4.90829 4.94092 4.98622 5.01026 5.11384 5.20917 5.23340 5.38208 5.40670 5.49504 5.59403 5.68371 6.00227 6.18414 6.24279 6.34554 6.36760 6.85278 7.11535 7.16305 7.69026 8.28251 8.99464 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.024067 B = 0.002756 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.119478 B =10158.898859 C =10622.564461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.157 3.843 3 H 0.055 0.945 4 C 0.060 3.940 5 N -0.529 5.529 6 C 0.076 3.924 7 C -0.129 4.129 8 C 0.528 3.472 9 O -0.573 6.573 10 N -0.720 5.720 11 C 0.122 3.878 12 C 0.490 3.510 13 O -0.542 6.542 14 O -0.505 6.505 15 C 0.053 3.947 16 C 0.164 3.836 17 H 0.040 0.960 18 C -0.131 4.131 19 N -0.606 5.606 20 C -0.266 4.266 21 H 0.022 0.978 22 C 0.020 3.980 23 N -0.935 5.935 24 Si 0.915 3.085 25 H -0.303 1.303 26 H -0.300 1.300 27 H -0.230 1.230 28 H 0.069 0.931 29 H 0.023 0.977 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.013 0.987 33 H 0.080 0.920 34 H 0.023 0.977 35 H 0.110 0.890 36 H 0.123 0.877 37 H 0.419 0.581 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.435 0.565 41 H 0.015 0.985 42 H 0.097 0.903 43 H 0.039 0.961 44 H 0.073 0.927 45 H 0.035 0.965 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.869 -17.934 20.825 28.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.052 3.948 3 H 0.074 0.926 4 C -0.069 4.069 5 N -0.253 5.253 6 C -0.052 4.052 7 C -0.169 4.169 8 C 0.316 3.684 9 O -0.453 6.453 10 N -0.377 5.377 11 C -0.002 4.002 12 C 0.333 3.667 13 O -0.432 6.432 14 O -0.318 6.318 15 C -0.076 4.076 16 C 0.059 3.941 17 H 0.058 0.942 18 C -0.189 4.189 19 N -0.331 5.331 20 C -0.395 4.395 21 H 0.039 0.961 22 C -0.179 4.179 23 N -0.577 5.577 24 Si 0.742 3.258 25 H -0.231 1.231 26 H -0.228 1.228 27 H -0.154 1.154 28 H 0.088 0.912 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.032 0.968 33 H 0.098 0.902 34 H 0.041 0.959 35 H 0.128 0.872 36 H 0.141 0.859 37 H 0.258 0.742 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.298 0.702 41 H 0.034 0.966 42 H 0.115 0.885 43 H 0.058 0.942 44 H 0.091 0.909 45 H 0.053 0.947 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.842 -17.315 20.992 28.059 hybrid contribution 0.003 -0.450 -1.187 1.269 sum -6.840 -17.764 19.806 27.470 Atomic orbital electron populations 1.21994 0.96543 1.01542 0.99961 1.20914 0.93325 0.94593 0.86010 0.92634 1.22421 0.97055 0.88543 0.98902 1.61885 1.58630 1.02177 1.02635 1.21726 0.97737 0.93924 0.91800 1.21596 1.05194 0.95389 0.94728 1.20831 0.77944 0.80746 0.88892 1.90721 1.40230 1.67273 1.47029 1.45751 1.56396 1.15239 1.20359 1.20688 1.02835 0.86908 0.89795 1.23139 0.76416 0.87648 0.79496 1.90754 1.40006 1.76793 1.35675 1.84449 1.72848 1.31372 1.43156 1.22590 0.95396 0.98791 0.90811 1.20912 0.96699 0.83471 0.92988 0.94222 1.21796 1.00188 0.99316 0.97566 1.44520 1.66937 1.02256 1.19415 1.18205 1.09186 1.25785 0.86349 0.96088 1.26262 0.99579 0.96404 0.95663 1.70058 1.35579 1.52335 0.99688 0.86361 0.83894 0.77406 0.78096 1.23147 1.22753 1.15371 0.91216 0.95778 0.92373 0.88972 0.96828 0.90158 0.95889 0.87237 0.85940 0.74227 0.85953 0.86217 0.70153 0.96633 0.88495 0.94201 0.90854 0.94665 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 9.21 71.98 0.66 -4.24 16 2 C 0.16 6.12 3.32 44.96 0.15 6.27 16 3 H 0.06 2.29 7.95 -2.39 -0.02 2.27 16 4 C 0.06 1.95 5.01 86.38 0.43 2.38 16 5 N -0.53 -15.47 4.13 -895.24 -3.70 -19.17 16 6 C 0.08 1.86 4.25 86.30 0.37 2.23 16 7 C -0.13 -2.31 5.63 29.85 0.17 -2.14 16 8 C 0.53 10.06 7.83 87.66 0.69 10.75 16 9 O -0.57 -15.09 15.98 -3.02 -0.05 -15.14 16 10 N -0.72 -10.05 5.53 -466.80 -2.58 -12.63 16 11 C 0.12 1.34 6.27 85.63 0.54 1.88 16 12 C 0.49 5.27 8.40 71.23 0.60 5.87 16 13 O -0.54 -9.08 16.43 21.95 0.36 -8.72 16 14 O -0.50 -3.00 13.42 -51.48 -0.69 -3.69 16 15 C 0.05 1.72 4.76 86.38 0.41 2.13 16 16 C 0.16 6.59 2.04 44.96 0.09 6.68 16 17 H 0.04 1.62 5.96 -2.39 -0.01 1.61 16 18 C -0.13 -5.51 7.84 71.98 0.56 -4.95 16 19 N -0.61 -27.87 1.97 -650.66 -1.28 -29.16 16 20 C -0.27 -14.85 8.71 84.03 0.73 -14.12 16 21 H 0.02 1.36 8.06 -2.91 -0.02 1.34 16 22 C 0.02 1.14 3.76 84.86 0.32 1.46 16 23 N -0.93 -57.09 13.97 21.65 0.30 -56.79 16 24 Si 0.91 45.04 25.42 68.60 1.74 46.78 16 25 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 26 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 27 H -0.23 -10.45 5.18 99.48 0.52 -9.94 16 28 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 2.00 7.06 -2.39 -0.02 1.99 16 31 H 0.09 2.51 7.99 -2.38 -0.02 2.49 16 32 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.08 1.95 7.93 -2.39 -0.02 1.93 16 34 H 0.02 0.64 8.08 -2.38 -0.02 0.62 16 35 H 0.11 1.73 6.40 -2.39 -0.02 1.71 16 36 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.42 5.13 7.44 -92.71 -0.69 4.44 16 38 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.44 -0.90 9.10 -74.06 -0.67 -1.58 16 41 H 0.02 0.56 8.14 -2.38 -0.02 0.54 16 42 H 0.10 2.46 6.16 -2.39 -0.01 2.45 16 43 H 0.04 1.87 7.69 -2.39 -0.02 1.86 16 44 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.03 1.65 3.78 -2.38 -0.01 1.64 16 46 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -74.56 360.30 -0.73 -75.29 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -0.55 Total: 9.04 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 5.72 Total: 14.19 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -7.26 Total: -117.74 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.38 Total: -27.55 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.74 Total: 46.78 kcal Total: -74.56 -0.73 -75.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594508142.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.058 kcal (2) G-P(sol) polarization free energy of solvation -74.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds