Wall clock time and date at job start Fri Apr 10 2020 18:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.62785 * 2 1 4 4 C 1.53235 * 109.63178 * 239.61998 * 2 1 3 5 5 N 1.46898 * 109.34242 * 186.45949 * 4 2 1 6 6 C 1.46905 * 110.99822 * 187.24803 * 5 4 2 7 7 C 1.50700 * 109.46761 * 169.99662 * 6 5 4 8 8 O 1.21273 * 120.00173 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99786 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00197 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47476 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47065 * 179.97438 * 11 10 9 13 13 O 1.20821 * 120.00151 * 0.02562 * 12 11 10 14 14 O 1.34223 * 119.99663 * 180.27301 * 12 11 10 15 15 C 1.46896 * 111.27259 * 63.10292 * 5 4 2 16 16 C 1.53246 * 109.33460 * 296.89606 * 15 5 4 17 17 H 1.09001 * 109.78554 * 173.63227 * 16 15 5 18 18 C 1.53000 * 109.62918 * 294.11701 * 16 15 5 19 19 N 1.47072 * 108.52360 * 53.83204 * 16 15 5 20 20 C 1.36932 * 120.88346 * 128.79252 * 19 16 15 21 21 H 1.08010 * 120.00188 * 206.35338 * 20 19 16 22 22 C 1.38804 * 120.00060 * 26.35084 * 20 19 16 23 23 N 1.31622 * 120.00224 * 17.41125 * 22 20 19 24 24 Si 1.86802 * 120.00051 * 197.41182 * 22 20 19 25 25 H 1.48496 * 109.47104 * 60.00133 * 24 22 20 26 26 H 1.48501 * 109.47091 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47295 * 299.99599 * 24 22 20 28 28 H 1.08998 * 109.46469 * 180.38763 * 1 2 3 29 29 H 1.09007 * 109.47128 * 300.38243 * 1 2 3 30 30 H 1.08991 * 109.47556 * 60.38341 * 1 2 3 31 31 H 1.09002 * 109.49584 * 66.49385 * 4 2 1 32 32 H 1.09010 * 109.51077 * 306.42966 * 4 2 1 33 33 H 1.09000 * 109.47074 * 49.99947 * 6 5 4 34 34 H 1.08991 * 109.47591 * 289.99809 * 6 5 4 35 35 H 0.97004 * 120.00248 * 359.97438 * 9 7 6 36 36 H 1.09000 * 109.47060 * 59.99696 * 10 9 7 37 37 H 1.09001 * 109.47012 * 299.99552 * 10 9 7 38 38 H 1.09000 * 109.46670 * 59.99513 * 11 10 9 39 39 H 1.09001 * 109.46823 * 299.99898 * 11 10 9 40 40 H 0.96699 * 117.00077 * 179.72386 * 14 12 11 41 41 H 1.08998 * 109.49651 * 56.85163 * 15 5 4 42 42 H 1.09000 * 109.49326 * 176.93597 * 15 5 4 43 43 H 1.09000 * 109.47491 * 179.03130 * 18 16 15 44 44 H 1.09002 * 109.47137 * 299.03799 * 18 16 15 45 45 H 1.08998 * 109.46713 * 59.03067 * 18 16 15 46 46 H 0.97001 * 120.00383 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0448 -0.7299 -1.2451 5 7 3.5055 -0.8622 -1.1624 6 6 4.0568 -1.4018 -2.4126 7 6 5.5598 -1.2946 -2.3862 8 8 6.1168 -0.8164 -1.4209 9 7 6.2849 -1.7303 -3.4354 10 6 7.7460 -1.6267 -3.4096 11 6 8.3203 -2.1886 -4.7117 12 6 9.8233 -2.0814 -4.6853 13 8 10.3782 -1.6050 -3.7236 14 8 10.5451 -2.5107 -5.7323 15 6 3.9017 -1.6869 -0.0132 16 6 3.4630 -0.9961 1.2824 17 1 3.6514 -1.6520 2.1324 18 6 4.2416 0.3092 1.4580 19 7 2.0242 -0.7048 1.1926 20 6 1.1673 -1.0803 2.1925 21 1 0.1257 -1.2617 1.9714 22 6 1.6372 -1.2280 3.4902 23 7 2.7881 -0.6926 3.8383 24 14 0.6362 -2.1865 4.7427 25 1 0.4525 -3.5811 4.2668 26 1 1.3517 -2.1982 6.0439 27 1 -0.6912 -1.5427 4.9129 28 1 -0.3632 -1.0277 0.0070 29 1 -0.3634 0.5198 0.8866 30 1 -0.3634 0.5078 -0.8933 31 1 1.7810 -0.1600 -2.1360 32 1 1.5924 -1.7202 -1.2997 33 1 3.6668 -0.8333 -3.2569 34 1 3.7689 -2.4480 -2.5150 35 1 5.8394 -2.1132 -4.2073 36 1 8.1358 -2.1958 -2.5656 37 1 8.0343 -0.5806 -3.3065 38 1 7.9305 -1.6198 -5.5559 39 1 8.0320 -3.2348 -4.8143 40 1 11.5057 -2.4175 -5.6711 41 1 3.4235 -2.6638 -0.0844 42 1 4.9846 -1.8109 -0.0106 43 1 3.9154 0.8069 2.3712 44 1 5.3074 0.0904 1.5242 45 1 4.0569 0.9602 0.6035 46 1 3.1163 -0.7954 4.7453 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594508679.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:13 Heat of formation + Delta-G solvation = -88.268890 kcal Electronic energy + Delta-G solvation = -27033.749678 eV Core-core repulsion = 23152.609120 eV Total energy + Delta-G solvation = -3881.140558 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.72300 -39.74740 -38.06100 -36.66832 -35.37673 -34.42341 -32.42994 -31.73746 -31.05259 -28.27940 -27.14678 -25.86822 -24.91623 -23.83128 -22.10659 -21.46356 -20.81640 -20.20572 -18.53892 -18.47053 -17.18687 -16.77580 -16.67315 -16.21193 -15.74226 -15.39495 -15.02438 -14.44186 -14.25635 -14.10108 -13.88025 -13.63298 -13.57249 -13.04677 -12.84020 -12.74607 -12.34380 -12.15849 -11.94005 -11.72271 -11.57991 -11.40129 -11.12944 -11.06132 -10.86211 -10.81077 -10.51237 -10.47867 -10.30040 -9.93176 -9.80087 -9.70635 -9.24683 -9.14990 -8.99906 -8.34531 -7.69714 -6.51174 -5.64336 -3.05420 1.75821 2.36392 2.80824 3.25189 3.44232 3.50812 3.50966 4.14778 4.47306 4.50159 4.59158 4.76999 4.91799 5.00324 5.33329 5.40224 5.43437 5.47841 5.52292 5.68482 5.87624 5.94957 6.04816 6.15635 6.20186 6.28360 6.33589 6.37641 6.49822 6.53959 6.83446 7.02821 7.04896 7.18789 7.34456 7.37064 7.42958 7.43111 7.65483 7.68039 7.85084 8.00159 8.12852 8.37604 8.58236 9.36150 9.99000 10.57524 11.42765 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.023955 B = 0.002760 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.587238 B =10142.934058 C =10811.934956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.172 3.828 3 H 0.034 0.966 4 C 0.050 3.950 5 N -0.513 5.513 6 C 0.037 3.963 7 C 0.512 3.488 8 O -0.500 6.500 9 N -0.743 5.743 10 C 0.131 3.869 11 C -0.125 4.125 12 C 0.483 3.517 13 O -0.506 6.506 14 O -0.519 6.519 15 C 0.038 3.962 16 C 0.201 3.799 17 H 0.093 0.907 18 C -0.128 4.128 19 N -0.586 5.586 20 C -0.249 4.249 21 H 0.069 0.931 22 C 0.001 3.999 23 N -0.896 5.896 24 Si 0.897 3.103 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.285 1.285 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.059 0.941 32 H 0.028 0.972 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.398 0.602 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.413 0.587 41 H 0.016 0.984 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.023 0.977 45 H 0.031 0.969 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.457 -4.497 -21.830 23.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.064 3.936 3 H 0.051 0.949 4 C -0.079 4.079 5 N -0.237 5.237 6 C -0.095 4.095 7 C 0.297 3.703 8 O -0.372 6.372 9 N -0.399 5.399 10 C 0.007 3.993 11 C -0.163 4.163 12 C 0.324 3.676 13 O -0.394 6.394 14 O -0.331 6.331 15 C -0.090 4.090 16 C 0.095 3.905 17 H 0.111 0.889 18 C -0.187 4.187 19 N -0.309 5.309 20 C -0.379 4.379 21 H 0.087 0.913 22 C -0.198 4.198 23 N -0.541 5.541 24 Si 0.728 3.272 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.211 1.211 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.231 0.769 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.272 0.728 41 H 0.034 0.966 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.042 0.958 45 H 0.050 0.950 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.850 -3.568 -20.573 22.678 hybrid contribution -0.262 -1.500 0.069 1.525 sum 8.588 -5.069 -20.504 22.801 Atomic orbital electron populations 1.21801 0.96110 1.01250 1.00330 1.20432 0.92115 0.94338 0.86668 0.94888 1.22712 0.86271 0.99165 0.99758 1.61682 1.10665 1.50741 1.00639 1.21946 0.91372 0.99723 0.96456 1.20780 0.89867 0.77478 0.82130 1.90757 1.72480 1.41592 1.32370 1.45950 1.06365 1.66299 1.21285 1.20985 0.80138 1.02595 0.95568 1.21468 0.87981 1.05614 1.01264 1.23126 0.91051 0.73844 0.79595 1.90807 1.73160 1.41110 1.34278 1.84504 1.26029 1.77770 1.44816 1.23010 1.00234 0.93392 0.92387 1.20362 0.82465 0.95428 0.92257 0.88938 1.21859 0.96882 0.99122 1.00841 1.44321 1.03683 1.64875 1.18014 1.19135 0.92791 1.39274 0.86657 0.91305 1.24998 0.97659 1.00412 0.96694 1.70026 1.21056 1.45022 1.17981 0.86451 0.79476 0.80342 0.80945 1.21384 1.21799 1.21129 0.92980 0.91828 0.94304 0.92208 0.95377 0.88579 0.92748 0.76876 0.90477 0.90419 0.86853 0.86870 0.72773 0.96594 0.90420 0.91390 0.95833 0.94965 0.93783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 7.93 37.16 0.29 -2.27 16 2 C 0.17 3.64 3.25 -67.49 -0.22 3.42 16 3 H 0.03 0.76 7.64 -51.93 -0.40 0.37 16 4 C 0.05 0.90 4.91 -3.70 -0.02 0.88 16 5 N -0.51 -9.44 3.86 -235.76 -0.91 -10.35 16 6 C 0.04 0.49 5.45 -4.97 -0.03 0.47 16 7 C 0.51 7.26 7.49 -10.99 -0.08 7.18 16 8 O -0.50 -9.67 14.33 5.56 0.08 -9.59 16 9 N -0.74 -6.89 5.56 -60.29 -0.33 -7.22 16 10 C 0.13 1.24 4.96 -4.04 -0.02 1.22 16 11 C -0.13 -0.67 5.93 -27.88 -0.17 -0.83 16 12 C 0.48 3.66 8.33 36.01 0.30 3.96 16 13 O -0.51 -5.99 16.74 -18.75 -0.31 -6.30 16 14 O -0.52 -2.69 13.42 -39.24 -0.53 -3.22 16 15 C 0.04 0.81 4.65 -3.70 -0.02 0.80 16 16 C 0.20 5.02 2.36 -67.49 -0.16 4.86 16 17 H 0.09 2.61 6.10 -51.93 -0.32 2.29 16 18 C -0.13 -3.22 8.96 37.16 0.33 -2.89 16 19 N -0.59 -14.71 2.73 -157.01 -0.43 -15.14 16 20 C -0.25 -6.74 8.73 -15.06 -0.13 -6.87 16 21 H 0.07 1.81 6.16 -52.48 -0.32 1.49 16 22 C 0.00 0.02 4.93 -17.43 -0.09 -0.06 16 23 N -0.90 -26.05 9.80 55.49 0.54 -25.50 16 24 Si 0.90 21.92 29.59 -169.99 -5.03 16.89 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 28 H 0.05 0.98 7.54 -51.93 -0.39 0.59 16 29 H 0.06 1.29 7.57 -51.93 -0.39 0.89 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.90 7.99 -51.93 -0.41 0.48 16 32 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 33 H 0.10 1.03 7.97 -51.93 -0.41 0.61 16 34 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 35 H 0.40 2.13 8.47 -40.82 -0.35 1.78 16 36 H 0.08 0.90 8.10 -51.93 -0.42 0.47 16 37 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 38 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.41 0.63 9.10 45.56 0.41 1.04 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 1.69 5.76 -51.93 -0.30 1.39 16 43 H 0.07 1.88 6.91 -51.93 -0.36 1.53 16 44 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.03 0.79 7.08 -51.93 -0.37 0.42 16 46 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 365.01 15.07 5.50 5.50 Total: -1.00 -35.89 365.01 -7.96 -43.85 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.54 Total: 1.23 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: 0.00 Total: 9.86 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: -1.13 Total: -58.22 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.76 Total: -19.11 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.89 -7.96 -43.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594508679.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.419 kcal (2) G-P(sol) polarization free energy of solvation -35.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds