Wall clock time and date at job start Fri Apr 10 2020 18:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.62785 * 2 1 4 4 C 1.53235 * 109.63178 * 239.61998 * 2 1 3 5 5 N 1.46898 * 109.34242 * 186.45949 * 4 2 1 6 6 C 1.46905 * 110.99822 * 187.24803 * 5 4 2 7 7 C 1.50700 * 109.46761 * 169.99662 * 6 5 4 8 8 O 1.21273 * 120.00173 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99786 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00197 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47476 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47065 * 179.97438 * 11 10 9 13 13 O 1.20821 * 120.00151 * 0.02562 * 12 11 10 14 14 O 1.34223 * 119.99663 * 180.27301 * 12 11 10 15 15 C 1.46896 * 111.27259 * 63.10292 * 5 4 2 16 16 C 1.53246 * 109.33460 * 296.89606 * 15 5 4 17 17 H 1.09001 * 109.78554 * 173.63227 * 16 15 5 18 18 C 1.53000 * 109.62918 * 294.11701 * 16 15 5 19 19 N 1.47072 * 108.52360 * 53.83204 * 16 15 5 20 20 C 1.36932 * 120.88346 * 128.79252 * 19 16 15 21 21 H 1.08010 * 120.00188 * 206.35338 * 20 19 16 22 22 C 1.38804 * 120.00060 * 26.35084 * 20 19 16 23 23 N 1.31622 * 120.00224 * 17.41125 * 22 20 19 24 24 Si 1.86802 * 120.00051 * 197.41182 * 22 20 19 25 25 H 1.48496 * 109.47104 * 60.00133 * 24 22 20 26 26 H 1.48501 * 109.47091 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47295 * 299.99599 * 24 22 20 28 28 H 1.08998 * 109.46469 * 180.38763 * 1 2 3 29 29 H 1.09007 * 109.47128 * 300.38243 * 1 2 3 30 30 H 1.08991 * 109.47556 * 60.38341 * 1 2 3 31 31 H 1.09002 * 109.49584 * 66.49385 * 4 2 1 32 32 H 1.09010 * 109.51077 * 306.42966 * 4 2 1 33 33 H 1.09000 * 109.47074 * 49.99947 * 6 5 4 34 34 H 1.08991 * 109.47591 * 289.99809 * 6 5 4 35 35 H 0.97004 * 120.00248 * 359.97438 * 9 7 6 36 36 H 1.09000 * 109.47060 * 59.99696 * 10 9 7 37 37 H 1.09001 * 109.47012 * 299.99552 * 10 9 7 38 38 H 1.09000 * 109.46670 * 59.99513 * 11 10 9 39 39 H 1.09001 * 109.46823 * 299.99898 * 11 10 9 40 40 H 0.96699 * 117.00077 * 179.72386 * 14 12 11 41 41 H 1.08998 * 109.49651 * 56.85163 * 15 5 4 42 42 H 1.09000 * 109.49326 * 176.93597 * 15 5 4 43 43 H 1.09000 * 109.47491 * 179.03130 * 18 16 15 44 44 H 1.09002 * 109.47137 * 299.03799 * 18 16 15 45 45 H 1.08998 * 109.46713 * 59.03067 * 18 16 15 46 46 H 0.97001 * 120.00383 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0448 -0.7299 -1.2451 5 7 3.5055 -0.8622 -1.1624 6 6 4.0568 -1.4018 -2.4126 7 6 5.5598 -1.2946 -2.3862 8 8 6.1168 -0.8164 -1.4209 9 7 6.2849 -1.7303 -3.4354 10 6 7.7460 -1.6267 -3.4096 11 6 8.3203 -2.1886 -4.7117 12 6 9.8233 -2.0814 -4.6853 13 8 10.3782 -1.6050 -3.7236 14 8 10.5451 -2.5107 -5.7323 15 6 3.9017 -1.6869 -0.0132 16 6 3.4630 -0.9961 1.2824 17 1 3.6514 -1.6520 2.1324 18 6 4.2416 0.3092 1.4580 19 7 2.0242 -0.7048 1.1926 20 6 1.1673 -1.0803 2.1925 21 1 0.1257 -1.2617 1.9714 22 6 1.6372 -1.2280 3.4902 23 7 2.7881 -0.6926 3.8383 24 14 0.6362 -2.1865 4.7427 25 1 0.4525 -3.5811 4.2668 26 1 1.3517 -2.1982 6.0439 27 1 -0.6912 -1.5427 4.9129 28 1 -0.3632 -1.0277 0.0070 29 1 -0.3634 0.5198 0.8866 30 1 -0.3634 0.5078 -0.8933 31 1 1.7810 -0.1600 -2.1360 32 1 1.5924 -1.7202 -1.2997 33 1 3.6668 -0.8333 -3.2569 34 1 3.7689 -2.4480 -2.5150 35 1 5.8394 -2.1132 -4.2073 36 1 8.1358 -2.1958 -2.5656 37 1 8.0343 -0.5806 -3.3065 38 1 7.9305 -1.6198 -5.5559 39 1 8.0320 -3.2348 -4.8143 40 1 11.5057 -2.4175 -5.6711 41 1 3.4235 -2.6638 -0.0844 42 1 4.9846 -1.8109 -0.0106 43 1 3.9154 0.8069 2.3712 44 1 5.3074 0.0904 1.5242 45 1 4.0569 0.9602 0.6035 46 1 3.1163 -0.7954 4.7453 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594508679.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:12 Heat of formation + Delta-G solvation = -117.231956 kcal Electronic energy + Delta-G solvation = -27035.005611 eV Core-core repulsion = 23152.609120 eV Total energy + Delta-G solvation = -3882.396491 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.37090 -40.89680 -39.58525 -37.24932 -36.43374 -35.93474 -34.18496 -33.22322 -32.29021 -29.92032 -28.61578 -27.49156 -26.22583 -25.36818 -23.59439 -22.46843 -22.09261 -21.29056 -20.33564 -19.10837 -18.14007 -17.96940 -17.46714 -17.39403 -17.16121 -16.59017 -16.37220 -15.86159 -15.65789 -15.60400 -15.38735 -14.93168 -14.78247 -14.32998 -14.20130 -14.11240 -13.55258 -13.24934 -12.99630 -12.96432 -12.84973 -12.73470 -12.68890 -12.61316 -12.49496 -12.28076 -12.19157 -12.08708 -11.82993 -11.72715 -11.59639 -11.37762 -11.03222 -10.62573 -10.41791 -10.08651 -9.12624 -8.51683 -7.73941 -5.16906 1.19821 1.48237 1.50555 1.56650 1.74047 1.75372 2.50507 2.57233 3.15161 3.39390 3.56344 3.66913 3.96810 4.02060 4.24092 4.34253 4.34898 4.42706 4.45016 4.58537 4.62128 4.67739 4.68359 4.78753 4.85783 4.90887 4.92518 4.94118 5.05231 5.11868 5.27193 5.36914 5.45479 5.49697 5.59724 5.63054 5.73393 5.78331 5.97624 6.20609 6.29508 6.51227 6.68592 6.97216 7.26985 7.40898 7.99442 8.53372 9.31187 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.023955 B = 0.002760 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.587238 B =10142.934058 C =10811.934956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.159 3.841 3 H 0.012 0.988 4 C 0.061 3.939 5 N -0.532 5.532 6 C 0.039 3.961 7 C 0.507 3.493 8 O -0.563 6.563 9 N -0.715 5.715 10 C 0.133 3.867 11 C -0.112 4.112 12 C 0.486 3.514 13 O -0.560 6.560 14 O -0.510 6.510 15 C 0.060 3.940 16 C 0.201 3.799 17 H 0.052 0.948 18 C -0.104 4.104 19 N -0.600 5.600 20 C -0.249 4.249 21 H 0.077 0.923 22 C -0.057 4.057 23 N -0.928 5.928 24 Si 0.959 3.041 25 H -0.282 1.282 26 H -0.301 1.301 27 H -0.277 1.277 28 H 0.051 0.949 29 H 0.039 0.961 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.032 0.968 33 H 0.137 0.863 34 H 0.081 0.919 35 H 0.422 0.578 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.429 0.571 41 H 0.013 0.987 42 H 0.068 0.932 43 H 0.034 0.966 44 H 0.017 0.983 45 H 0.032 0.968 46 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.004 -5.761 -25.957 27.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.053 3.947 3 H 0.030 0.970 4 C -0.068 4.068 5 N -0.257 5.257 6 C -0.092 4.092 7 C 0.294 3.706 8 O -0.440 6.440 9 N -0.371 5.371 10 C 0.008 3.992 11 C -0.149 4.149 12 C 0.330 3.670 13 O -0.451 6.451 14 O -0.323 6.323 15 C -0.070 4.070 16 C 0.094 3.906 17 H 0.070 0.930 18 C -0.164 4.164 19 N -0.324 5.324 20 C -0.379 4.379 21 H 0.095 0.905 22 C -0.252 4.252 23 N -0.575 5.575 24 Si 0.789 3.211 25 H -0.208 1.208 26 H -0.228 1.228 27 H -0.202 1.202 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.050 0.950 33 H 0.155 0.845 34 H 0.099 0.901 35 H 0.261 0.739 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.165 0.835 39 H 0.162 0.838 40 H 0.291 0.709 41 H 0.031 0.969 42 H 0.086 0.914 43 H 0.053 0.947 44 H 0.036 0.964 45 H 0.051 0.949 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 7.376 -4.870 -24.828 26.354 hybrid contribution 0.247 -1.072 1.214 1.638 sum 7.623 -5.942 -23.614 25.515 Atomic orbital electron populations 1.21695 0.94116 1.01392 1.01237 1.20722 0.93895 0.93348 0.86740 0.97040 1.22569 0.85710 0.99407 0.99094 1.61497 1.11314 1.51047 1.01824 1.22082 0.90453 1.01746 0.94892 1.21077 0.90573 0.76800 0.82137 1.90750 1.73550 1.44770 1.34968 1.45626 1.06184 1.64483 1.20820 1.20856 0.80107 1.01010 0.97236 1.21433 0.86231 1.07648 0.99605 1.23534 0.92013 0.72449 0.78979 1.90804 1.74291 1.43717 1.36328 1.84469 1.27464 1.76903 1.43499 1.22533 0.99412 0.92972 0.92040 1.20163 0.82948 0.94388 0.93132 0.93028 1.21598 0.96485 0.99340 0.98930 1.44548 1.03402 1.65526 1.18898 1.19492 0.93356 1.37919 0.87126 0.90517 1.25733 0.98883 1.01893 0.98658 1.70219 1.22814 1.46769 1.17671 0.85457 0.78201 0.79171 0.78281 1.20833 1.22806 1.20243 0.93036 0.94214 0.90188 0.88054 0.94961 0.84499 0.90126 0.73943 0.93294 0.92931 0.83538 0.83805 0.70946 0.96865 0.91366 0.94702 0.96351 0.94893 0.94773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 7.93 71.98 0.57 -3.89 16 2 C 0.16 6.55 3.25 44.96 0.15 6.70 16 3 H 0.01 0.54 7.64 -2.39 -0.02 0.52 16 4 C 0.06 1.96 4.91 86.38 0.42 2.39 16 5 N -0.53 -18.46 3.86 -899.81 -3.47 -21.93 16 6 C 0.04 0.89 5.45 85.56 0.47 1.36 16 7 C 0.51 13.45 7.49 87.66 0.66 14.10 16 8 O -0.56 -22.10 14.33 -3.01 -0.04 -22.14 16 9 N -0.71 -11.23 5.56 -463.06 -2.57 -13.80 16 10 C 0.13 2.37 4.96 86.38 0.43 2.80 16 11 C -0.11 -0.84 5.93 29.85 0.18 -0.67 16 12 C 0.49 6.63 8.33 71.24 0.59 7.22 16 13 O -0.56 -13.47 16.74 21.98 0.37 -13.10 16 14 O -0.51 -4.04 13.42 -51.35 -0.69 -4.73 16 15 C 0.06 2.54 4.65 86.39 0.40 2.94 16 16 C 0.20 10.35 2.36 44.96 0.11 10.45 16 17 H 0.05 3.07 6.10 -2.39 -0.01 3.06 16 18 C -0.10 -5.52 8.96 71.98 0.65 -4.88 16 19 N -0.60 -30.51 2.73 -650.65 -1.78 -32.29 16 20 C -0.25 -13.63 8.73 84.03 0.73 -12.89 16 21 H 0.08 4.01 6.16 -2.91 -0.02 3.99 16 22 C -0.06 -3.23 4.93 84.86 0.42 -2.82 16 23 N -0.93 -56.58 9.80 21.65 0.21 -56.36 16 24 Si 0.96 46.16 29.59 68.60 2.03 48.19 16 25 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 26 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 27 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 28 H 0.05 1.81 7.54 -2.39 -0.02 1.79 16 29 H 0.04 1.56 7.57 -2.38 -0.02 1.54 16 30 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.10 2.47 7.99 -2.39 -0.02 2.45 16 32 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.14 2.08 7.97 -2.39 -0.02 2.06 16 34 H 0.08 1.52 8.12 -2.39 -0.02 1.50 16 35 H 0.42 2.47 8.47 -92.71 -0.79 1.69 16 36 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 37 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 38 H 0.15 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.14 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.43 0.51 9.10 -74.06 -0.67 -0.17 16 41 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.07 3.04 5.76 -2.39 -0.01 3.03 16 43 H 0.03 2.03 6.91 -2.39 -0.02 2.01 16 44 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.03 1.68 7.08 -2.39 -0.02 1.66 16 46 H 0.24 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -85.00 365.01 -0.63 -85.63 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -0.46 Total: 7.74 kcal Atomic # 6 Polarization: 17.04 SS G_CDS: 5.77 Total: 22.81 kcal Atomic # 7 Polarization: -116.78 SS G_CDS: -7.61 Total: -124.39 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -0.36 Total: -39.97 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -85.00 -0.63 -85.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594508679.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.600 kcal (2) G-P(sol) polarization free energy of solvation -85.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds