Wall clock time and date at job start Fri Apr 10 2020 18:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.78515 * 2 1 4 4 C 1.52782 * 109.56127 * 239.76876 * 2 1 3 5 5 N 1.46898 * 109.42492 * 186.61190 * 4 2 1 6 6 C 1.46901 * 110.99710 * 187.11073 * 5 4 2 7 7 C 1.50697 * 109.46949 * 65.70113 * 6 5 4 8 8 O 1.21284 * 120.00191 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00092 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99991 * 179.97438 * 9 7 6 11 11 C 1.53007 * 109.46894 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.46973 * 179.97438 * 11 10 9 13 13 O 1.20820 * 119.99993 * 359.97438 * 12 11 10 14 14 O 1.34227 * 119.99613 * 180.02562 * 12 11 10 15 15 C 1.46898 * 111.26757 * 62.96493 * 5 4 2 16 16 C 1.53245 * 109.33945 * 296.89352 * 15 5 4 17 17 H 1.09000 * 109.78804 * 294.02667 * 16 15 5 18 18 C 1.53004 * 109.62729 * 173.54298 * 16 15 5 19 19 N 1.47078 * 108.51900 * 53.83242 * 16 15 5 20 20 C 1.36937 * 120.87643 * 128.81560 * 19 16 15 21 21 H 1.07999 * 119.99744 * 233.63605 * 20 19 16 22 22 C 1.38810 * 119.99835 * 53.64571 * 20 19 16 23 23 N 1.31624 * 119.99634 * 200.96633 * 22 20 19 24 24 Si 1.86799 * 120.00266 * 20.96655 * 22 20 19 25 25 H 1.48496 * 109.46885 * 264.79368 * 24 22 20 26 26 H 1.48493 * 109.47254 * 24.79926 * 24 22 20 27 27 H 1.48503 * 109.46808 * 144.79926 * 24 22 20 28 28 H 1.08996 * 109.47547 * 303.68961 * 1 2 3 29 29 H 1.09001 * 109.47069 * 63.68966 * 1 2 3 30 30 H 1.09002 * 109.47376 * 183.68531 * 1 2 3 31 31 H 1.09000 * 109.56245 * 66.55221 * 4 2 1 32 32 H 1.09001 * 109.33347 * 306.52602 * 4 2 1 33 33 H 1.09000 * 109.46818 * 185.69284 * 6 5 4 34 34 H 1.08997 * 109.47287 * 305.70029 * 6 5 4 35 35 H 0.97004 * 120.00115 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.47608 * 299.99541 * 10 9 7 37 37 H 1.08996 * 109.47565 * 60.00290 * 10 9 7 38 38 H 1.08994 * 109.47192 * 300.00307 * 11 10 9 39 39 H 1.08997 * 109.46914 * 60.00327 * 11 10 9 40 40 H 0.96696 * 116.99772 * 179.97438 * 14 12 11 41 41 H 1.09000 * 109.48995 * 176.93661 * 15 5 4 42 42 H 1.09001 * 109.49701 * 56.85486 * 15 5 4 43 43 H 1.09003 * 109.46755 * 294.09141 * 18 16 15 44 44 H 1.09001 * 109.47248 * 54.08856 * 18 16 15 45 45 H 1.08999 * 109.47060 * 174.09045 * 18 16 15 46 46 H 0.97002 * 119.99698 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0415 -0.7248 -1.2439 5 7 3.5018 -0.8625 -1.1632 6 6 4.0495 -1.4024 -2.4147 7 6 3.8367 -0.4078 -3.5266 8 8 3.2827 0.6469 -3.2990 9 7 4.2618 -0.6902 -4.7740 10 6 4.0544 0.2766 -5.8550 11 6 4.6250 -0.2858 -7.1585 12 6 4.4110 0.7084 -8.2707 13 8 3.8585 1.7587 -8.0441 14 8 4.8335 0.4266 -9.5132 15 6 3.8964 -1.6901 -0.0155 16 6 3.4619 -0.9993 1.2816 17 1 4.0199 -0.0719 1.4106 18 6 3.7239 -1.9263 2.4703 19 7 2.0240 -0.7027 1.1939 20 6 1.1671 -1.0761 2.1947 21 1 0.2900 -1.6624 1.9638 22 6 1.4258 -0.7008 3.5058 23 7 0.8791 -1.3667 4.5009 24 14 2.5497 0.7491 3.8579 25 1 3.9290 0.2576 4.1049 26 1 2.5529 1.6677 2.6912 27 1 2.0604 1.4746 5.0578 28 1 -0.3634 0.5700 0.8550 29 1 -0.3633 0.4555 -0.9212 30 1 -0.3634 -1.0255 0.0661 31 1 1.7786 -0.1528 -2.1336 32 1 1.5855 -1.7134 -1.2986 33 1 5.1166 -1.5890 -2.2936 34 1 3.5429 -2.3358 -2.6603 35 1 4.7045 -1.5338 -4.9562 36 1 2.9872 0.4625 -5.9764 37 1 4.5603 1.2103 -5.6095 38 1 5.6921 -0.4721 -7.0375 39 1 4.1187 -1.2193 -7.4039 40 1 4.6735 1.0950 -10.1934 41 1 4.9789 -1.8180 -0.0144 42 1 3.4146 -2.6652 -0.0873 43 1 3.0784 -2.8017 2.3975 44 1 4.7671 -2.2424 2.4615 45 1 3.5129 -1.3954 3.3985 46 1 1.0602 -1.1047 5.4171 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594508680.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:16 Heat of formation + Delta-G solvation = -87.335877 kcal Electronic energy + Delta-G solvation = -26948.699783 eV Core-core repulsion = 23067.599683 eV Total energy + Delta-G solvation = -3881.100099 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.79059 -39.88369 -38.25214 -36.73655 -35.51758 -34.67402 -32.83795 -31.85294 -31.47220 -28.56589 -27.33120 -25.97538 -25.26233 -24.06770 -21.78863 -21.50086 -20.53102 -20.34270 -19.19453 -18.59808 -17.33066 -16.85615 -16.84088 -16.30845 -15.84883 -15.63137 -15.20133 -14.70921 -14.66677 -14.24770 -14.07674 -13.74597 -13.61337 -13.31243 -12.86841 -12.55408 -12.43055 -12.28662 -12.15487 -12.01154 -11.94136 -11.80569 -11.48651 -11.13337 -11.09427 -11.01500 -10.66465 -10.40705 -10.12117 -10.04711 -9.91406 -9.75459 -9.56868 -9.34745 -9.24700 -8.33195 -7.91159 -6.35315 -5.95024 -3.51007 1.69386 2.28742 2.66457 3.14655 3.40465 3.53708 3.67744 4.06623 4.30041 4.42834 4.60426 4.70007 4.78796 4.93121 5.02127 5.22909 5.29929 5.34546 5.39525 5.58425 5.74895 5.80945 5.98348 6.01301 6.07097 6.15007 6.16911 6.29858 6.44280 6.46851 6.50306 6.56816 6.58048 6.80799 7.09237 7.12277 7.22626 7.26142 7.36777 7.41773 7.53093 7.59720 8.18463 8.23056 8.60455 9.12514 9.77092 10.35685 11.17996 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.031125 B = 0.002665 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.385625 B =10505.585351 C =10778.606933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.171 3.829 3 H 0.035 0.965 4 C 0.046 3.954 5 N -0.521 5.521 6 C 0.038 3.962 7 C 0.514 3.486 8 O -0.507 6.507 9 N -0.741 5.741 10 C 0.131 3.869 11 C -0.126 4.126 12 C 0.483 3.517 13 O -0.507 6.507 14 O -0.518 6.518 15 C 0.050 3.950 16 C 0.170 3.830 17 H 0.031 0.969 18 C -0.143 4.143 19 N -0.600 5.600 20 C -0.266 4.266 21 H 0.070 0.930 22 C 0.055 3.945 23 N -0.897 5.897 24 Si 0.871 3.129 25 H -0.281 1.281 26 H -0.266 1.266 27 H -0.303 1.303 28 H 0.063 0.937 29 H 0.037 0.963 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.024 0.976 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.399 0.601 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.413 0.587 41 H 0.063 0.937 42 H 0.035 0.965 43 H 0.067 0.933 44 H 0.033 0.967 45 H 0.069 0.931 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.464 -2.797 -24.349 26.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.065 3.935 3 H 0.053 0.947 4 C -0.083 4.083 5 N -0.245 5.245 6 C -0.094 4.094 7 C 0.300 3.700 8 O -0.379 6.379 9 N -0.397 5.397 10 C 0.007 3.993 11 C -0.164 4.164 12 C 0.324 3.676 13 O -0.394 6.394 14 O -0.331 6.331 15 C -0.079 4.079 16 C 0.064 3.936 17 H 0.049 0.951 18 C -0.200 4.200 19 N -0.326 5.326 20 C -0.395 4.395 21 H 0.087 0.913 22 C -0.147 4.147 23 N -0.537 5.537 24 Si 0.700 3.300 25 H -0.208 1.208 26 H -0.191 1.191 27 H -0.230 1.230 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.043 0.957 33 H 0.117 0.883 34 H 0.076 0.924 35 H 0.233 0.767 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.273 0.727 41 H 0.081 0.919 42 H 0.053 0.947 43 H 0.086 0.914 44 H 0.052 0.948 45 H 0.088 0.912 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.096 -1.557 -23.525 25.647 hybrid contribution 0.547 -0.010 -0.475 0.725 sum 10.643 -1.567 -24.000 26.301 Atomic orbital electron populations 1.21684 0.95286 1.01818 0.99942 1.20515 0.92991 0.94133 0.85827 0.94730 1.22727 0.85449 0.99135 1.00963 1.61626 1.12741 1.49767 1.00349 1.21938 1.02059 0.94832 0.90555 1.20769 0.78109 0.88423 0.82736 1.90733 1.39941 1.25098 1.82154 1.45937 1.63369 1.21690 1.08709 1.20995 1.02177 0.92488 0.83643 1.21467 1.05398 0.98427 0.91084 1.23112 0.74608 0.86762 0.83087 1.90803 1.39174 1.26123 1.83341 1.84505 1.76341 1.52190 1.20027 1.22715 0.98746 0.94748 0.91676 1.20684 0.86354 0.95097 0.91446 0.95140 1.22016 0.98215 1.00823 0.98970 1.44507 1.02633 1.65884 1.19604 1.18413 1.06798 1.29045 0.85209 0.91266 1.25868 0.96207 0.96506 0.96142 1.69891 1.45781 1.39067 0.98935 0.87139 0.80417 0.85210 0.77280 1.20821 1.19086 1.23039 0.91816 0.94372 0.92722 0.90139 0.95731 0.88265 0.92376 0.76724 0.90441 0.90391 0.86803 0.86813 0.72729 0.91887 0.94667 0.91410 0.94805 0.91241 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 8.19 37.16 0.30 -2.35 16 2 C 0.17 3.78 3.64 -67.73 -0.25 3.53 16 3 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 4 C 0.05 0.87 4.52 -3.94 -0.02 0.86 16 5 N -0.52 -9.14 4.37 -236.06 -1.03 -10.17 16 6 C 0.04 0.47 5.45 -4.98 -0.03 0.45 16 7 C 0.51 6.71 7.49 -10.99 -0.08 6.63 16 8 O -0.51 -9.11 14.33 5.55 0.08 -9.03 16 9 N -0.74 -6.16 5.56 -60.29 -0.33 -6.50 16 10 C 0.13 1.11 4.96 -4.04 -0.02 1.09 16 11 C -0.13 -0.58 5.93 -27.88 -0.17 -0.74 16 12 C 0.48 3.33 8.33 36.01 0.30 3.63 16 13 O -0.51 -5.61 16.74 -18.75 -0.31 -5.93 16 14 O -0.52 -2.39 13.42 -39.25 -0.53 -2.92 16 15 C 0.05 0.90 4.91 -3.70 -0.02 0.88 16 16 C 0.17 3.75 2.46 -67.49 -0.17 3.58 16 17 H 0.03 0.72 7.38 -51.93 -0.38 0.34 16 18 C -0.14 -3.13 7.85 37.16 0.29 -2.84 16 19 N -0.60 -14.55 2.26 -157.27 -0.36 -14.90 16 20 C -0.27 -7.27 7.28 -15.06 -0.11 -7.38 16 21 H 0.07 2.06 7.23 -52.49 -0.38 1.69 16 22 C 0.05 1.54 3.97 -17.43 -0.07 1.47 16 23 N -0.90 -26.68 13.97 55.49 0.78 -25.91 16 24 Si 0.87 22.66 24.63 -169.99 -4.19 18.47 16 25 H -0.28 -7.05 6.44 56.52 0.36 -6.69 16 26 H -0.27 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 28 H 0.06 1.40 7.83 -51.93 -0.41 0.99 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 1.14 7.38 -51.93 -0.38 0.76 16 31 H 0.08 1.53 5.76 -51.93 -0.30 1.23 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.10 0.99 7.97 -51.93 -0.41 0.58 16 34 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 35 H 0.40 1.80 8.47 -40.82 -0.35 1.45 16 36 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 37 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 38 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.41 0.40 9.10 45.56 0.41 0.81 16 41 H 0.06 0.96 7.99 -51.93 -0.41 0.55 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.07 1.56 7.73 -51.93 -0.40 1.16 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.07 1.71 3.30 -51.93 -0.17 1.54 16 46 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 360.69 15.07 5.44 5.44 Total: -1.00 -36.47 360.69 -7.06 -43.53 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.58 Total: -0.91 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -0.03 Total: 8.82 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.95 Total: -57.47 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.76 Total: -17.87 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.19 Total: 18.47 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.47 -7.06 -43.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594508680.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.802 kcal (2) G-P(sol) polarization free energy of solvation -36.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds