Wall clock time and date at job start Fri Apr 10 2020 18:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.78515 * 2 1 4 4 C 1.52782 * 109.56127 * 239.76876 * 2 1 3 5 5 N 1.46898 * 109.42492 * 186.61190 * 4 2 1 6 6 C 1.46901 * 110.99710 * 187.11073 * 5 4 2 7 7 C 1.50697 * 109.46949 * 65.70113 * 6 5 4 8 8 O 1.21284 * 120.00191 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00092 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99991 * 179.97438 * 9 7 6 11 11 C 1.53007 * 109.46894 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.46973 * 179.97438 * 11 10 9 13 13 O 1.20820 * 119.99993 * 359.97438 * 12 11 10 14 14 O 1.34227 * 119.99613 * 180.02562 * 12 11 10 15 15 C 1.46898 * 111.26757 * 62.96493 * 5 4 2 16 16 C 1.53245 * 109.33945 * 296.89352 * 15 5 4 17 17 H 1.09000 * 109.78804 * 294.02667 * 16 15 5 18 18 C 1.53004 * 109.62729 * 173.54298 * 16 15 5 19 19 N 1.47078 * 108.51900 * 53.83242 * 16 15 5 20 20 C 1.36937 * 120.87643 * 128.81560 * 19 16 15 21 21 H 1.07999 * 119.99744 * 233.63605 * 20 19 16 22 22 C 1.38810 * 119.99835 * 53.64571 * 20 19 16 23 23 N 1.31624 * 119.99634 * 200.96633 * 22 20 19 24 24 Si 1.86799 * 120.00266 * 20.96655 * 22 20 19 25 25 H 1.48496 * 109.46885 * 264.79368 * 24 22 20 26 26 H 1.48493 * 109.47254 * 24.79926 * 24 22 20 27 27 H 1.48503 * 109.46808 * 144.79926 * 24 22 20 28 28 H 1.08996 * 109.47547 * 303.68961 * 1 2 3 29 29 H 1.09001 * 109.47069 * 63.68966 * 1 2 3 30 30 H 1.09002 * 109.47376 * 183.68531 * 1 2 3 31 31 H 1.09000 * 109.56245 * 66.55221 * 4 2 1 32 32 H 1.09001 * 109.33347 * 306.52602 * 4 2 1 33 33 H 1.09000 * 109.46818 * 185.69284 * 6 5 4 34 34 H 1.08997 * 109.47287 * 305.70029 * 6 5 4 35 35 H 0.97004 * 120.00115 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.47608 * 299.99541 * 10 9 7 37 37 H 1.08996 * 109.47565 * 60.00290 * 10 9 7 38 38 H 1.08994 * 109.47192 * 300.00307 * 11 10 9 39 39 H 1.08997 * 109.46914 * 60.00327 * 11 10 9 40 40 H 0.96696 * 116.99772 * 179.97438 * 14 12 11 41 41 H 1.09000 * 109.48995 * 176.93661 * 15 5 4 42 42 H 1.09001 * 109.49701 * 56.85486 * 15 5 4 43 43 H 1.09003 * 109.46755 * 294.09141 * 18 16 15 44 44 H 1.09001 * 109.47248 * 54.08856 * 18 16 15 45 45 H 1.08999 * 109.47060 * 174.09045 * 18 16 15 46 46 H 0.97002 * 119.99698 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0415 -0.7248 -1.2439 5 7 3.5018 -0.8625 -1.1632 6 6 4.0495 -1.4024 -2.4147 7 6 3.8367 -0.4078 -3.5266 8 8 3.2827 0.6469 -3.2990 9 7 4.2618 -0.6902 -4.7740 10 6 4.0544 0.2766 -5.8550 11 6 4.6250 -0.2858 -7.1585 12 6 4.4110 0.7084 -8.2707 13 8 3.8585 1.7587 -8.0441 14 8 4.8335 0.4266 -9.5132 15 6 3.8964 -1.6901 -0.0155 16 6 3.4619 -0.9993 1.2816 17 1 4.0199 -0.0719 1.4106 18 6 3.7239 -1.9263 2.4703 19 7 2.0240 -0.7027 1.1939 20 6 1.1671 -1.0761 2.1947 21 1 0.2900 -1.6624 1.9638 22 6 1.4258 -0.7008 3.5058 23 7 0.8791 -1.3667 4.5009 24 14 2.5497 0.7491 3.8579 25 1 3.9290 0.2576 4.1049 26 1 2.5529 1.6677 2.6912 27 1 2.0604 1.4746 5.0578 28 1 -0.3634 0.5700 0.8550 29 1 -0.3633 0.4555 -0.9212 30 1 -0.3634 -1.0255 0.0661 31 1 1.7786 -0.1528 -2.1336 32 1 1.5855 -1.7134 -1.2986 33 1 5.1166 -1.5890 -2.2936 34 1 3.5429 -2.3358 -2.6603 35 1 4.7045 -1.5338 -4.9562 36 1 2.9872 0.4625 -5.9764 37 1 4.5603 1.2103 -5.6095 38 1 5.6921 -0.4721 -7.0375 39 1 4.1187 -1.2193 -7.4039 40 1 4.6735 1.0950 -10.1934 41 1 4.9789 -1.8180 -0.0144 42 1 3.4146 -2.6652 -0.0873 43 1 3.0784 -2.8017 2.3975 44 1 4.7671 -2.2424 2.4615 45 1 3.5129 -1.3954 3.3985 46 1 1.0602 -1.1047 5.4171 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594508680.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:16 Heat of formation + Delta-G solvation = -118.214734 kcal Electronic energy + Delta-G solvation = -26950.038790 eV Core-core repulsion = 23067.599683 eV Total energy + Delta-G solvation = -3882.439107 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.37963 -40.94145 -39.72214 -37.26093 -36.58181 -36.02652 -34.55762 -33.65456 -32.38811 -30.09558 -28.79406 -27.52428 -26.62737 -25.30774 -23.21126 -22.17015 -22.09891 -21.33943 -21.03743 -19.11240 -18.53334 -17.98629 -17.48883 -17.39833 -17.20028 -16.64753 -16.60136 -16.45054 -15.83324 -15.67160 -15.26798 -15.04159 -14.75032 -14.53009 -14.23513 -14.14807 -13.96475 -13.71764 -13.41488 -13.01963 -12.96803 -12.85007 -12.72757 -12.59550 -12.50143 -12.38172 -12.17614 -11.93145 -11.85609 -11.75551 -11.71300 -11.51246 -11.25922 -10.80577 -10.45985 -10.11145 -9.22654 -8.34809 -8.14285 -5.68921 1.19717 1.30252 1.39586 1.54657 1.69622 1.73417 2.44485 2.47850 3.03284 3.10176 3.37189 3.55834 3.91378 4.01820 4.15847 4.19081 4.33167 4.34382 4.38610 4.51259 4.55035 4.58162 4.60930 4.61798 4.76832 4.78528 4.84994 4.87225 4.90603 4.91646 4.93655 5.16304 5.33136 5.39876 5.42961 5.50066 5.62985 5.64389 6.00836 6.14344 6.16643 6.36832 6.64385 6.97036 7.13647 7.36021 7.65722 8.27198 9.01110 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.031125 B = 0.002665 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.385625 B =10505.585351 C =10778.606933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.163 3.837 3 H 0.010 0.990 4 C 0.064 3.936 5 N -0.542 5.542 6 C 0.040 3.960 7 C 0.511 3.489 8 O -0.566 6.566 9 N -0.714 5.714 10 C 0.133 3.867 11 C -0.113 4.113 12 C 0.487 3.513 13 O -0.560 6.560 14 O -0.510 6.510 15 C 0.063 3.937 16 C 0.160 3.840 17 H 0.016 0.984 18 C -0.135 4.135 19 N -0.611 5.611 20 C -0.247 4.247 21 H 0.037 0.963 22 C 0.018 3.982 23 N -0.936 5.936 24 Si 0.920 3.080 25 H -0.263 1.263 26 H -0.281 1.281 27 H -0.308 1.308 28 H 0.040 0.960 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.025 0.975 33 H 0.136 0.864 34 H 0.085 0.915 35 H 0.423 0.577 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.429 0.571 41 H 0.101 0.899 42 H 0.036 0.964 43 H 0.049 0.951 44 H 0.074 0.926 45 H 0.039 0.961 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.240 -4.536 -26.965 30.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.057 3.943 3 H 0.028 0.972 4 C -0.065 4.065 5 N -0.266 5.266 6 C -0.091 4.091 7 C 0.298 3.702 8 O -0.443 6.443 9 N -0.370 5.370 10 C 0.008 3.992 11 C -0.150 4.150 12 C 0.330 3.670 13 O -0.451 6.451 14 O -0.324 6.324 15 C -0.066 4.066 16 C 0.054 3.946 17 H 0.034 0.966 18 C -0.193 4.193 19 N -0.338 5.338 20 C -0.376 4.376 21 H 0.055 0.945 22 C -0.180 4.180 23 N -0.578 5.578 24 Si 0.749 3.251 25 H -0.189 1.189 26 H -0.206 1.206 27 H -0.236 1.236 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.043 0.957 33 H 0.153 0.847 34 H 0.103 0.897 35 H 0.261 0.739 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.291 0.709 41 H 0.119 0.881 42 H 0.054 0.946 43 H 0.068 0.932 44 H 0.093 0.907 45 H 0.058 0.942 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.943 -3.356 -26.225 29.437 hybrid contribution -0.300 0.521 0.181 0.628 sum 12.643 -2.834 -26.044 29.089 Atomic orbital electron populations 1.21586 0.94694 1.01173 1.00419 1.20632 0.93716 0.93189 0.86721 0.97201 1.22374 0.86994 0.98402 0.98693 1.61479 1.11486 1.51044 1.02616 1.22068 1.04102 0.95082 0.87830 1.20988 0.77473 0.87672 0.84094 1.90725 1.42893 1.27492 1.83239 1.45631 1.61792 1.22395 1.07188 1.20871 1.00721 0.92062 0.85540 1.21440 1.07333 0.98315 0.87949 1.23532 0.73256 0.86207 0.83965 1.90800 1.41721 1.28419 1.84157 1.84472 1.75572 1.52667 1.19690 1.22498 1.00847 0.93760 0.89468 1.20828 0.84541 0.95005 0.94189 0.96592 1.21915 1.00362 0.99542 0.97490 1.44680 1.03472 1.66215 1.19472 1.18182 1.06161 1.27369 0.85931 0.94517 1.26234 0.97672 0.98039 0.96084 1.69966 1.48000 1.40620 0.99240 0.86361 0.80194 0.82515 0.76044 1.18931 1.20640 1.23638 0.94125 0.91483 0.93422 0.90116 0.95705 0.84669 0.89713 0.73910 0.92939 0.92875 0.83674 0.83781 0.70940 0.88091 0.94561 0.93231 0.90730 0.94213 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 8.19 71.98 0.59 -4.48 16 2 C 0.16 7.26 3.64 44.81 0.16 7.43 16 3 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 4 C 0.06 2.38 4.52 86.23 0.39 2.77 16 5 N -0.54 -17.58 4.37 -900.75 -3.94 -21.51 16 6 C 0.04 0.82 5.45 85.56 0.47 1.29 16 7 C 0.51 12.04 7.49 87.66 0.66 12.70 16 8 O -0.57 -20.05 14.33 -3.04 -0.04 -20.10 16 9 N -0.71 -9.51 5.56 -463.06 -2.57 -12.08 16 10 C 0.13 2.04 4.96 86.38 0.43 2.47 16 11 C -0.11 -0.65 5.93 29.85 0.18 -0.48 16 12 C 0.49 5.82 8.33 71.24 0.59 6.41 16 13 O -0.56 -12.37 16.74 21.98 0.37 -12.00 16 14 O -0.51 -3.39 13.42 -51.39 -0.69 -4.08 16 15 C 0.06 2.04 4.91 86.39 0.42 2.47 16 16 C 0.16 6.81 2.46 44.96 0.11 6.93 16 17 H 0.02 0.75 7.38 -2.39 -0.02 0.73 16 18 C -0.14 -5.75 7.85 71.98 0.56 -5.18 16 19 N -0.61 -29.85 2.26 -651.48 -1.47 -31.32 16 20 C -0.25 -13.84 7.28 84.03 0.61 -13.23 16 21 H 0.04 2.30 7.23 -2.91 -0.02 2.28 16 22 C 0.02 1.05 3.97 84.86 0.34 1.39 16 23 N -0.94 -57.15 13.97 21.65 0.30 -56.85 16 24 Si 0.92 47.80 24.63 68.60 1.69 49.49 16 25 H -0.26 -12.80 6.44 99.48 0.64 -12.16 16 26 H -0.28 -15.11 7.11 99.48 0.71 -14.40 16 27 H -0.31 -16.15 7.11 99.48 0.71 -15.44 16 28 H 0.04 1.84 7.83 -2.39 -0.02 1.82 16 29 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.05 2.03 7.38 -2.39 -0.02 2.01 16 31 H 0.08 3.02 5.76 -2.39 -0.01 3.00 16 32 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.14 1.87 7.97 -2.39 -0.02 1.85 16 34 H 0.09 1.39 8.12 -2.39 -0.02 1.37 16 35 H 0.42 1.66 8.47 -92.71 -0.79 0.87 16 36 H 0.05 1.09 8.10 -2.39 -0.02 1.08 16 37 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 38 H 0.15 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.14 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.43 -0.02 9.10 -74.06 -0.67 -0.70 16 41 H 0.10 2.54 7.99 -2.39 -0.02 2.52 16 42 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.05 2.25 7.73 -2.39 -0.02 2.23 16 44 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 45 H 0.04 1.91 3.30 -2.39 -0.01 1.90 16 46 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -84.62 360.69 -1.37 -85.98 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -0.52 Total: 1.99 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: 5.51 Total: 20.48 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -7.68 Total: -121.77 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -0.37 Total: -36.17 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 1.69 Total: 49.49 kcal Total: -84.62 -1.37 -85.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594508680.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.231 kcal (2) G-P(sol) polarization free energy of solvation -84.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds