Wall clock time and date at job start Fri Apr 10 2020 18:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46797 * 2 1 4 4 C 1.50700 * 109.47389 * 119.99806 * 2 1 3 5 5 O 1.21282 * 119.99919 * 95.48642 * 4 2 1 6 6 N 1.34773 * 120.00250 * 275.49035 * 4 2 1 7 7 C 1.46499 * 120.00029 * 359.97438 * 6 4 2 8 8 C 1.46501 * 120.00306 * 179.97438 * 6 4 2 9 9 C 1.50701 * 109.46738 * 89.99760 * 8 6 4 10 10 H 1.08002 * 120.00079 * 0.02562 * 9 8 6 11 11 C 1.37878 * 119.99837 * 179.97438 * 9 8 6 12 12 N 1.31514 * 120.00065 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99864 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47338 * 60.00860 * 13 11 9 15 15 H 1.48503 * 109.47049 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47382 * 300.00403 * 13 11 9 17 17 N 1.46897 * 109.47316 * 240.00334 * 2 1 3 18 18 C 1.46961 * 111.00164 * 176.19995 * 17 2 1 19 19 C 1.53044 * 109.38090 * 176.81888 * 18 17 2 20 20 N 1.46955 * 109.36478 * 58.39145 * 19 18 17 21 21 C 1.46905 * 110.99948 * 176.80626 * 20 19 18 22 22 C 1.50707 * 109.47187 * 189.99982 * 21 20 19 23 23 O 1.20831 * 119.99744 * 359.97438 * 22 21 20 24 24 O 1.34219 * 120.00122 * 180.02562 * 22 21 20 25 25 C 1.46951 * 110.88240 * 300.67783 * 20 19 18 26 26 C 1.46959 * 111.01850 * 52.38590 * 17 2 1 27 27 H 1.09001 * 109.46940 * 59.99857 * 1 2 3 28 28 H 1.09000 * 109.46797 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46925 * 300.00242 * 1 2 3 30 30 H 1.09004 * 109.47669 * 89.99697 * 7 6 4 31 31 H 1.09006 * 109.47408 * 209.99992 * 7 6 4 32 32 H 1.09001 * 109.47228 * 329.99911 * 7 6 4 33 33 H 1.08997 * 109.47791 * 210.00287 * 8 6 4 34 34 H 1.09000 * 109.47087 * 330.00409 * 8 6 4 35 35 H 0.97003 * 119.99944 * 179.97438 * 12 11 9 36 36 H 1.09004 * 109.48606 * 56.84329 * 18 17 2 37 37 H 1.08990 * 109.48798 * 296.79756 * 18 17 2 38 38 H 1.09003 * 109.48955 * 178.36072 * 19 18 17 39 39 H 1.08998 * 109.49226 * 298.42170 * 19 18 17 40 40 H 1.08994 * 109.47424 * 310.00354 * 21 20 19 41 41 H 1.09000 * 109.46656 * 70.00453 * 21 20 19 42 42 H 0.96696 * 117.00279 * 179.97438 * 24 22 21 43 43 H 1.09001 * 109.49242 * 179.28918 * 25 20 19 44 44 H 1.09008 * 109.48949 * 299.35264 * 25 20 19 45 45 H 1.08995 * 109.46954 * 63.20574 * 26 17 2 46 46 H 1.08996 * 109.50908 * 303.15918 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.3293 -1.8849 1.1739 6 7 2.1518 -0.0405 2.3938 7 6 1.7937 1.3784 2.4621 8 6 2.6397 -0.7312 3.5901 9 6 4.1406 -0.6151 3.6601 10 1 4.6773 -0.0799 2.8907 11 6 4.8285 -1.1911 4.7070 12 7 4.1749 -1.8423 5.6442 13 14 6.6888 -1.0466 4.7942 14 1 7.0715 0.3868 4.8592 15 1 7.1835 -1.7468 6.0068 16 1 7.2906 -1.6653 3.5858 17 7 2.0197 -0.6924 -1.1994 18 6 3.4860 -0.6338 -1.2797 19 6 3.9603 -1.4317 -2.4965 20 7 3.3467 -0.8781 -3.7116 21 6 3.8369 -1.5703 -4.9111 22 6 3.3837 -0.8263 -6.1409 23 8 2.7200 0.1773 -6.0295 24 8 3.7163 -1.2790 -7.3598 25 6 1.8806 -0.9372 -3.6316 26 6 1.4061 -0.1393 -2.4148 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.7403 1.4752 2.7250 31 1 2.4039 1.8712 3.2192 32 1 1.9706 1.8449 1.4930 33 1 2.1983 -0.2771 4.4773 34 1 2.3586 -1.7832 3.5423 35 1 4.6589 -2.2479 6.3806 36 1 3.9171 -1.0608 -0.3742 37 1 3.8035 0.4041 -1.3792 38 1 5.0455 -1.3653 -2.5744 39 1 3.6668 -2.4754 -2.3839 40 1 4.9260 -1.6074 -4.8897 41 1 3.4391 -2.5848 -4.9331 42 1 3.4024 -0.7684 -8.1186 43 1 1.4494 -0.5103 -4.5371 44 1 1.5633 -1.9753 -3.5320 45 1 1.6997 0.9043 -2.5274 46 1 0.3209 -0.2054 -2.3371 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603134210.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:31 Heat of formation + Delta-G solvation = -92.184110 kcal Electronic energy + Delta-G solvation = -27332.208305 eV Core-core repulsion = 23450.897970 eV Total energy + Delta-G solvation = -3881.310335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.68691 -39.78069 -38.36885 -36.46022 -35.52397 -34.69299 -32.66803 -31.54510 -30.85839 -28.63318 -27.73843 -25.90888 -25.21591 -24.14904 -23.10222 -21.76990 -21.38421 -19.81708 -18.37368 -18.26155 -16.84959 -16.74391 -16.50140 -16.38909 -16.14151 -15.23862 -14.95553 -14.92572 -14.54089 -14.51909 -13.96942 -13.94326 -13.64237 -13.26419 -12.91840 -12.73044 -12.48265 -12.23515 -12.03964 -11.90448 -11.81422 -11.73405 -11.65794 -11.35903 -11.28702 -11.17091 -11.00517 -10.86007 -10.68262 -10.55578 -10.44061 -10.14527 -9.62409 -8.80424 -8.59331 -8.42569 -8.07122 -7.59801 -6.03336 -4.08237 1.93820 2.57590 3.31872 3.36261 3.37138 3.45329 3.69662 3.75973 4.19225 4.45561 4.72099 4.79986 4.94481 4.96827 5.01786 5.12910 5.20245 5.26743 5.31635 5.34714 5.41035 5.46884 5.51765 5.65019 5.78099 5.79270 5.82193 5.92192 5.96560 6.04001 6.14396 6.17361 6.21785 6.32545 6.64007 6.76858 6.99194 7.17173 7.22724 7.46644 7.57535 7.63922 7.93307 8.24746 8.46448 8.91791 9.16955 9.56931 11.04651 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.017645 B = 0.003268 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.478262 B = 8566.881479 C = 9680.513113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.063 3.937 3 H 0.059 0.941 4 C 0.510 3.490 5 O -0.522 6.522 6 N -0.604 5.604 7 C 0.082 3.918 8 C 0.247 3.753 9 C -0.526 4.526 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.897 3.103 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 N -0.517 5.517 18 C 0.057 3.943 19 C 0.064 3.936 20 N -0.529 5.529 21 C 0.063 3.937 22 C 0.478 3.522 23 O -0.497 6.497 24 O -0.521 6.521 25 C 0.052 3.948 26 C 0.058 3.942 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.264 0.736 36 H 0.096 0.904 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.052 0.948 40 H 0.118 0.882 41 H 0.079 0.921 42 H 0.410 0.590 43 H 0.091 0.909 44 H 0.043 0.957 45 H 0.042 0.958 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.837 4.425 -21.290 22.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.049 4.049 3 H 0.076 0.924 4 C 0.295 3.705 5 O -0.398 6.398 6 N -0.337 5.337 7 C -0.063 4.063 8 C 0.128 3.872 9 C -0.565 4.565 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 N -0.243 5.243 18 C -0.071 4.071 19 C -0.063 4.063 20 N -0.256 5.256 21 C -0.066 4.066 22 C 0.319 3.681 23 O -0.384 6.384 24 O -0.333 6.333 25 C -0.076 4.076 26 C -0.070 4.070 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.057 0.943 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.136 0.864 41 H 0.097 0.903 42 H 0.269 0.731 43 H 0.109 0.891 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.697 3.738 -20.733 21.585 hybrid contribution 0.913 0.578 -0.334 1.131 sum -3.784 4.316 -21.067 21.835 Atomic orbital electron populations 1.21804 0.92538 1.03404 1.02114 1.21682 0.96889 0.95995 0.90292 0.92364 1.20037 0.79058 0.87506 0.83882 1.90663 1.49058 1.15854 1.84185 1.48178 1.64042 1.09995 1.11510 1.21690 0.99555 0.83123 1.01883 1.19262 0.94105 0.93623 0.80256 1.21385 0.91974 1.34735 1.08357 0.92615 1.24932 0.98649 0.94997 0.95496 1.69923 1.35864 1.35408 1.12202 0.86571 0.85311 0.78133 0.77474 1.20280 1.21186 1.20171 1.61862 1.06466 1.55234 1.00709 1.22192 0.87490 0.98864 0.98508 1.22176 0.98862 0.97675 0.87617 1.61882 1.07634 1.55098 1.00971 1.21512 1.02924 0.95758 0.86448 1.23402 0.76777 0.83390 0.84523 1.90708 1.35909 1.24918 1.86824 1.84514 1.73904 1.57948 1.16965 1.22364 0.86654 0.99477 0.99074 1.22191 0.99470 0.96792 0.88576 0.91763 0.91132 0.91574 0.93743 0.90811 0.92549 0.95097 0.93861 0.92670 0.88545 0.94305 0.89903 0.92987 0.86430 0.90336 0.73087 0.89098 0.93917 0.94005 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.66 37.16 0.32 -1.49 16 2 C 0.06 0.99 1.79 -68.86 -0.12 0.87 16 3 H 0.06 0.86 6.08 -51.93 -0.32 0.54 16 4 C 0.51 10.66 5.93 -10.99 -0.07 10.60 16 5 O -0.52 -13.20 15.22 5.56 0.08 -13.12 16 6 N -0.60 -12.87 2.86 -182.95 -0.52 -13.39 16 7 C 0.08 1.31 9.87 59.85 0.59 1.90 16 8 C 0.25 6.48 5.16 -5.19 -0.03 6.45 16 9 C -0.53 -14.87 9.39 -34.44 -0.32 -15.20 16 10 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 13 Si 0.90 21.80 29.54 -169.99 -5.02 16.77 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 N -0.52 -7.96 4.26 -227.88 -0.97 -8.93 16 18 C 0.06 0.89 5.32 -3.77 -0.02 0.87 16 19 C 0.06 0.81 5.61 -3.77 -0.02 0.79 16 20 N -0.53 -6.20 4.45 -235.91 -1.05 -7.24 16 21 C 0.06 0.55 5.56 -4.97 -0.03 0.52 16 22 C 0.48 4.50 8.03 36.01 0.29 4.78 16 23 O -0.50 -6.26 15.10 -18.75 -0.28 -6.54 16 24 O -0.52 -3.50 13.42 -39.23 -0.53 -4.02 16 25 C 0.05 0.62 5.26 -3.77 -0.02 0.60 16 26 C 0.06 0.73 5.13 -3.77 -0.02 0.71 16 27 H 0.06 0.67 6.25 -51.93 -0.32 0.34 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.80 7.58 -51.93 -0.39 0.40 16 30 H 0.04 0.61 7.97 -51.93 -0.41 0.20 16 31 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 32 H 0.06 0.76 5.86 -51.93 -0.30 0.46 16 33 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.10 1.83 6.51 -51.93 -0.34 1.49 16 37 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.12 0.83 8.03 -51.93 -0.42 0.42 16 41 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 42 H 0.41 1.11 9.10 45.56 0.41 1.52 16 43 H 0.09 1.08 5.86 -51.93 -0.30 0.77 16 44 H 0.04 0.51 8.14 -51.92 -0.42 0.09 16 45 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.95 6.01 -51.93 -0.31 0.63 16 LS Contribution 366.45 15.07 5.52 5.52 Total: -1.00 -35.67 366.45 -8.00 -43.68 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.43 Total: 0.12 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: 0.46 Total: 13.06 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -1.81 Total: -55.47 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.73 Total: -23.68 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.67 -8.00 -43.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603134210.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.507 kcal (2) G-P(sol) polarization free energy of solvation -35.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds