Wall clock time and date at job start Fri Apr 10 2020 18:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47287 * 2 1 4 4 O 1.42905 * 109.47333 * 119.99805 * 2 1 3 5 5 C 1.42903 * 113.99571 * 89.99940 * 4 2 1 6 6 C 1.50704 * 109.46820 * 180.02562 * 5 4 2 7 7 O 1.21276 * 119.99900 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99591 * 179.97438 * 6 5 4 9 9 C 1.46509 * 119.99609 * 179.97438 * 8 6 5 10 10 H 1.08996 * 110.90026 * 37.41869 * 9 8 6 11 11 C 1.55142 * 110.98933 * 273.55051 * 9 8 6 12 12 C 1.54323 * 103.01716 * 206.25399 * 11 9 8 13 13 N 1.47445 * 107.23173 * 22.28926 * 12 11 9 14 14 C 1.46899 * 111.00339 * 123.25791 * 13 12 11 15 15 C 1.50698 * 109.46987 * 69.86847 * 14 13 12 16 16 O 1.21293 * 120.00006 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99538 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99773 * 179.72591 * 17 15 14 19 19 H 1.08002 * 119.99671 * 0.27660 * 18 17 15 20 20 C 1.38950 * 120.00030 * 180.27703 * 18 17 15 21 21 N 1.31414 * 119.99926 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47459 * 59.99812 * 22 20 18 24 24 H 1.48502 * 109.47317 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47211 * 300.00250 * 22 20 18 26 26 C 1.47847 * 108.56663 * 0.98282 * 13 12 11 27 27 H 1.09000 * 109.47041 * 59.99797 * 1 2 3 28 28 H 1.08997 * 109.47265 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46906 * 300.00404 * 1 2 3 30 30 H 1.09003 * 109.47291 * 239.99905 * 2 1 3 31 31 H 1.09000 * 109.47452 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47245 * 300.00078 * 3 2 1 33 33 H 1.08996 * 109.47226 * 60.00413 * 3 2 1 34 34 H 1.08997 * 109.47234 * 60.00315 * 5 4 2 35 35 H 1.08997 * 109.47142 * 299.99849 * 5 4 2 36 36 H 0.97000 * 120.00402 * 0.02562 * 8 6 5 37 37 H 1.08998 * 110.70336 * 87.87425 * 11 9 8 38 38 H 1.08999 * 110.71150 * 324.63726 * 11 9 8 39 39 H 1.09000 * 109.88972 * 262.88348 * 12 11 9 40 40 H 1.08997 * 110.02173 * 141.76332 * 12 11 9 41 41 H 1.09003 * 109.46477 * 309.87337 * 14 13 12 42 42 H 1.08993 * 109.47002 * 189.87663 * 14 13 12 43 43 H 0.97001 * 120.00485 * 0.02562 * 17 15 14 44 44 H 0.96999 * 119.99863 * 180.02562 * 21 20 18 45 45 H 1.09006 * 110.37063 * 94.73699 * 26 13 12 46 46 H 1.09000 * 110.37539 * 217.07484 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 -2.0782 0.9886 6 6 2.7003 -2.6834 2.2749 7 8 2.8734 -1.9812 3.2484 8 7 2.9544 -4.0052 2.3436 9 6 3.4412 -4.5935 3.5940 10 1 2.9662 -4.1241 4.4554 11 6 4.9866 -4.4956 3.6894 12 6 5.3534 -5.6773 4.6117 13 7 4.2432 -6.6452 4.5441 14 6 4.7227 -7.9679 4.1216 15 6 5.5531 -8.5762 5.2222 16 8 5.7279 -7.9680 6.2569 17 7 6.1008 -9.7966 5.0571 18 6 6.8610 -10.3477 6.0561 19 1 7.0172 -9.8058 6.9772 20 6 7.4303 -11.6034 5.8836 21 7 7.2406 -12.2625 4.7627 22 14 8.4654 -12.3545 7.2451 23 1 7.6405 -12.5000 8.4713 24 1 8.9548 -13.6893 6.8158 25 1 9.6246 -11.4711 7.5304 26 6 3.2234 -6.1271 3.6073 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 2.9320 -2.2467 0.1986 35 1 1.2538 -2.5433 0.7125 36 1 2.8156 -4.5669 1.5651 37 1 5.2857 -3.5487 4.1389 38 1 5.4421 -4.6179 2.7068 39 1 5.4758 -5.3244 5.6357 40 1 6.2755 -6.1463 4.2685 41 1 5.3307 -7.8638 3.2229 42 1 3.8700 -8.6131 3.9107 43 1 5.9607 -10.2832 4.2297 44 1 7.6377 -13.1393 4.6424 45 1 3.3783 -6.5411 2.6109 46 1 2.2222 -6.3651 3.9666 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665525418.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:07 Heat of formation + Delta-G solvation = -111.907001 kcal Electronic energy + Delta-G solvation = -25574.704901 eV Core-core repulsion = 21692.539318 eV Total energy + Delta-G solvation = -3882.165583 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.29124 -39.13171 -38.29466 -37.39945 -34.55181 -33.80302 -33.19654 -31.39963 -30.92745 -29.05005 -27.91356 -27.51021 -26.17933 -24.15994 -21.79148 -21.55408 -21.16350 -20.58283 -19.07025 -17.85859 -17.54846 -17.43533 -16.38726 -16.34471 -15.97877 -15.51222 -15.16475 -14.82215 -14.50561 -14.23861 -14.02173 -13.86973 -13.50568 -13.29812 -13.25421 -13.07352 -12.95517 -12.61815 -12.44076 -12.27079 -11.92326 -11.87053 -11.63833 -11.49565 -11.42065 -11.22183 -11.17276 -10.99505 -10.61034 -10.43103 -10.20018 -10.10286 -9.99643 -9.47734 -9.27102 -8.45620 -7.95955 -7.91681 -6.40337 -3.80964 2.36993 2.44917 3.21349 3.26706 3.31360 3.53542 3.92289 4.06217 4.23645 4.36427 4.45737 4.53819 4.58267 4.66969 4.70235 4.72216 4.81097 5.03814 5.15326 5.15761 5.25656 5.26299 5.28604 5.34845 5.40303 5.40683 5.60150 5.72414 5.73955 5.78181 5.78667 5.91746 5.97211 6.08666 6.24292 6.30390 6.48098 6.69198 7.16755 7.19888 7.26050 7.56460 7.98655 8.07629 8.63651 9.19890 9.56037 10.08333 10.77456 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.050174 B = 0.001861 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.918831 B =15039.491022 C =15218.492884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.079 3.921 3 C -0.150 4.150 4 O -0.357 6.357 5 C 0.045 3.955 6 C 0.514 3.486 7 O -0.514 6.514 8 N -0.721 5.721 9 C 0.138 3.862 10 H 0.105 0.895 11 C -0.154 4.154 12 C 0.058 3.942 13 N -0.502 5.502 14 C 0.041 3.959 15 C 0.444 3.556 16 O -0.575 6.575 17 N -0.566 5.566 18 C -0.298 4.298 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.904 5.904 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.039 3.961 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.400 0.600 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.088 0.912 43 H 0.391 0.609 44 H 0.271 0.729 45 H 0.049 0.951 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.091 18.736 -16.176 27.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.276 6.276 5 C -0.036 4.036 6 C 0.299 3.701 7 O -0.388 6.388 8 N -0.375 5.375 9 C 0.033 3.967 10 H 0.123 0.877 11 C -0.194 4.194 12 C -0.070 4.070 13 N -0.226 5.226 14 C -0.090 4.090 15 C 0.229 3.771 16 O -0.458 6.458 17 N -0.203 5.203 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.200 1.200 26 C -0.090 4.090 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.234 0.766 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.106 0.894 43 H 0.224 0.776 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.955 19.516 -14.130 26.897 hybrid contribution 0.677 -1.279 -1.455 2.052 sum -11.278 18.237 -15.585 26.508 Atomic orbital electron populations 1.22318 0.95770 1.02443 1.02878 1.22185 0.93831 0.94097 0.87778 1.21856 1.02005 0.94185 1.02687 1.88083 1.86589 1.17608 1.35273 1.22226 1.01195 0.84332 0.95812 1.20240 0.77939 0.82167 0.89800 1.90756 1.50271 1.60295 1.37440 1.45824 1.68506 1.08197 1.14969 1.22122 0.94488 0.93175 0.86868 0.87663 1.23247 0.95259 1.00364 1.00514 1.22706 0.93102 0.90674 1.00505 1.63236 1.11594 1.01579 1.46203 1.22092 0.99223 0.91235 0.96482 1.19719 0.84878 0.83354 0.89184 1.90530 1.63779 1.62254 1.29243 1.41850 1.45357 1.15170 1.17960 1.19654 1.25406 1.00160 0.97561 0.87980 1.25246 0.98439 0.96527 0.97740 1.69604 1.45463 1.14448 1.24990 0.85920 0.79886 0.77878 0.80542 1.19894 1.21016 1.19955 1.23253 0.97969 0.92317 0.95466 0.91480 0.92477 0.91496 0.92034 0.91833 0.91106 0.91532 0.90288 0.90328 0.76604 0.90222 0.91473 0.89556 0.92316 0.93266 0.89352 0.77562 0.91885 0.93246 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.00 9.53 37.16 0.35 -0.65 16 2 C 0.08 0.53 3.34 -26.73 -0.09 0.44 16 3 C -0.15 -0.92 9.56 37.16 0.36 -0.57 16 4 O -0.36 -3.65 9.52 -55.14 -0.52 -4.18 16 5 C 0.04 0.34 6.23 36.01 0.22 0.56 16 6 C 0.51 5.69 7.91 -10.98 -0.09 5.60 16 7 O -0.51 -8.28 16.24 -14.35 -0.23 -8.51 16 8 N -0.72 -6.47 5.23 -51.74 -0.27 -6.74 16 9 C 0.14 1.62 3.31 -65.79 -0.22 1.40 16 10 H 0.11 1.44 7.73 -51.93 -0.40 1.04 16 11 C -0.15 -1.97 6.64 -24.90 -0.17 -2.14 16 12 C 0.06 0.93 5.65 -2.83 -0.02 0.92 16 13 N -0.50 -8.20 4.85 -232.69 -1.13 -9.33 16 14 C 0.04 0.72 5.03 -4.98 -0.03 0.69 16 15 C 0.44 10.44 7.43 -10.99 -0.08 10.36 16 16 O -0.57 -15.62 15.12 5.55 0.08 -15.54 16 17 N -0.57 -14.29 5.29 -10.96 -0.06 -14.35 16 18 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 22 Si 0.93 21.12 29.55 -169.99 -5.02 16.09 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 C 0.04 0.45 6.31 -2.30 -0.01 0.44 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.30 7.87 -51.93 -0.41 -0.11 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.30 7.79 -51.93 -0.40 -0.10 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.41 8.08 -51.93 -0.42 -0.01 16 35 H 0.08 0.41 7.87 -51.93 -0.41 0.00 16 36 H 0.40 2.24 8.52 -40.82 -0.35 1.89 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.06 1.01 7.31 -51.93 -0.38 0.63 16 41 H 0.05 0.77 7.96 -51.93 -0.41 0.36 16 42 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 43 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 44 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.05 0.48 7.67 -51.93 -0.40 0.08 16 46 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 381.79 15.07 5.75 5.75 Total: -1.00 -35.11 381.79 -8.32 -43.43 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -7.64 Total: 8.05 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: 0.00 Total: 9.09 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.73 Total: -54.19 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.67 Total: -28.23 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.11 -8.32 -43.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665525418.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.478 kcal (2) G-P(sol) polarization free energy of solvation -35.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds