Wall clock time and date at job start Fri Apr 10 2020 18:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47287 * 2 1 4 4 O 1.42905 * 109.47333 * 119.99805 * 2 1 3 5 5 C 1.42903 * 113.99571 * 89.99940 * 4 2 1 6 6 C 1.50704 * 109.46820 * 180.02562 * 5 4 2 7 7 O 1.21276 * 119.99900 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99591 * 179.97438 * 6 5 4 9 9 C 1.46509 * 119.99609 * 179.97438 * 8 6 5 10 10 H 1.08996 * 110.90026 * 37.41869 * 9 8 6 11 11 C 1.55142 * 110.98933 * 273.55051 * 9 8 6 12 12 C 1.54323 * 103.01716 * 206.25399 * 11 9 8 13 13 N 1.47445 * 107.23173 * 22.28926 * 12 11 9 14 14 C 1.46899 * 111.00339 * 123.25791 * 13 12 11 15 15 C 1.50698 * 109.46987 * 69.86847 * 14 13 12 16 16 O 1.21293 * 120.00006 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99538 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99773 * 179.72591 * 17 15 14 19 19 H 1.08002 * 119.99671 * 0.27660 * 18 17 15 20 20 C 1.38950 * 120.00030 * 180.27703 * 18 17 15 21 21 N 1.31414 * 119.99926 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47459 * 59.99812 * 22 20 18 24 24 H 1.48502 * 109.47317 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47211 * 300.00250 * 22 20 18 26 26 C 1.47847 * 108.56663 * 0.98282 * 13 12 11 27 27 H 1.09000 * 109.47041 * 59.99797 * 1 2 3 28 28 H 1.08997 * 109.47265 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46906 * 300.00404 * 1 2 3 30 30 H 1.09003 * 109.47291 * 239.99905 * 2 1 3 31 31 H 1.09000 * 109.47452 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47245 * 300.00078 * 3 2 1 33 33 H 1.08996 * 109.47226 * 60.00413 * 3 2 1 34 34 H 1.08997 * 109.47234 * 60.00315 * 5 4 2 35 35 H 1.08997 * 109.47142 * 299.99849 * 5 4 2 36 36 H 0.97000 * 120.00402 * 0.02562 * 8 6 5 37 37 H 1.08998 * 110.70336 * 87.87425 * 11 9 8 38 38 H 1.08999 * 110.71150 * 324.63726 * 11 9 8 39 39 H 1.09000 * 109.88972 * 262.88348 * 12 11 9 40 40 H 1.08997 * 110.02173 * 141.76332 * 12 11 9 41 41 H 1.09003 * 109.46477 * 309.87337 * 14 13 12 42 42 H 1.08993 * 109.47002 * 189.87663 * 14 13 12 43 43 H 0.97001 * 120.00485 * 0.02562 * 17 15 14 44 44 H 0.96999 * 119.99863 * 180.02562 * 21 20 18 45 45 H 1.09006 * 110.37063 * 94.73699 * 26 13 12 46 46 H 1.09000 * 110.37539 * 217.07484 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 -2.0782 0.9886 6 6 2.7003 -2.6834 2.2749 7 8 2.8734 -1.9812 3.2484 8 7 2.9544 -4.0052 2.3436 9 6 3.4412 -4.5935 3.5940 10 1 2.9662 -4.1241 4.4554 11 6 4.9866 -4.4956 3.6894 12 6 5.3534 -5.6773 4.6117 13 7 4.2432 -6.6452 4.5441 14 6 4.7227 -7.9679 4.1216 15 6 5.5531 -8.5762 5.2222 16 8 5.7279 -7.9680 6.2569 17 7 6.1008 -9.7966 5.0571 18 6 6.8610 -10.3477 6.0561 19 1 7.0172 -9.8058 6.9772 20 6 7.4303 -11.6034 5.8836 21 7 7.2406 -12.2625 4.7627 22 14 8.4654 -12.3545 7.2451 23 1 7.6405 -12.5000 8.4713 24 1 8.9548 -13.6893 6.8158 25 1 9.6246 -11.4711 7.5304 26 6 3.2234 -6.1271 3.6073 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 2.9320 -2.2467 0.1986 35 1 1.2538 -2.5433 0.7125 36 1 2.8156 -4.5669 1.5651 37 1 5.2857 -3.5487 4.1389 38 1 5.4421 -4.6179 2.7068 39 1 5.4758 -5.3244 5.6357 40 1 6.2755 -6.1463 4.2685 41 1 5.3307 -7.8638 3.2229 42 1 3.8700 -8.6131 3.9107 43 1 5.9607 -10.2832 4.2297 44 1 7.6377 -13.1393 4.6424 45 1 3.3783 -6.5411 2.6109 46 1 2.2222 -6.3651 3.9666 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665525418.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:07 Heat of formation + Delta-G solvation = -139.695950 kcal Electronic energy + Delta-G solvation = -25575.909920 eV Core-core repulsion = 21692.539318 eV Total energy + Delta-G solvation = -3883.370603 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.24118 -40.40107 -39.33047 -38.66716 -36.00507 -35.40694 -33.71947 -33.28584 -32.24731 -30.02871 -28.85824 -28.09538 -27.50234 -25.89583 -22.61252 -22.30359 -22.18712 -21.64777 -20.79895 -19.83519 -18.35577 -18.12840 -17.67864 -17.33310 -17.02959 -16.68954 -16.47879 -16.11436 -15.67841 -15.60673 -15.37848 -14.86527 -14.66837 -14.54699 -14.39529 -13.88014 -13.74988 -13.54601 -13.49827 -13.29555 -13.05432 -12.98144 -12.88022 -12.74156 -12.49213 -12.42367 -12.35202 -12.33056 -12.11547 -11.79691 -11.63031 -11.47981 -10.90433 -10.62870 -10.31663 -10.16428 -9.98818 -9.23507 -8.45203 -5.93423 1.40213 1.41996 1.52526 1.55079 1.72121 2.08496 2.29954 2.77727 3.07245 3.21647 3.32473 3.52181 3.71970 3.76577 4.01665 4.03147 4.11643 4.21958 4.26999 4.28249 4.30588 4.33447 4.35866 4.45132 4.54005 4.65055 4.76440 4.82369 4.84024 4.92645 4.93652 4.95510 4.98763 5.16331 5.30477 5.34659 5.39797 5.42188 5.85779 5.99695 6.11315 6.17982 6.55489 6.63265 7.15213 7.22845 7.59056 8.15865 8.71893 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.050174 B = 0.001861 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.918831 B =15039.491022 C =15218.492884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.073 3.927 3 C -0.152 4.152 4 O -0.396 6.396 5 C 0.047 3.953 6 C 0.509 3.491 7 O -0.574 6.574 8 N -0.701 5.701 9 C 0.146 3.854 10 H 0.079 0.921 11 C -0.141 4.141 12 C 0.062 3.938 13 N -0.529 5.529 14 C 0.056 3.944 15 C 0.438 3.562 16 O -0.619 6.619 17 N -0.574 5.574 18 C -0.334 4.334 19 H 0.076 0.924 20 C -0.012 4.012 21 N -0.919 5.919 22 Si 0.991 3.009 23 H -0.273 1.273 24 H -0.269 1.269 25 H -0.274 1.274 26 C 0.046 3.954 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.421 0.579 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.052 0.948 40 H 0.043 0.957 41 H 0.076 0.924 42 H 0.116 0.884 43 H 0.397 0.603 44 H 0.277 0.723 45 H 0.085 0.915 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.066 18.104 -19.177 29.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.016 3.984 3 C -0.209 4.209 4 O -0.316 6.316 5 C -0.032 4.032 6 C 0.296 3.704 7 O -0.453 6.453 8 N -0.356 5.356 9 C 0.040 3.960 10 H 0.097 0.903 11 C -0.181 4.181 12 C -0.066 4.066 13 N -0.254 5.254 14 C -0.075 4.075 15 C 0.226 3.774 16 O -0.504 6.504 17 N -0.212 5.212 18 C -0.463 4.463 19 H 0.094 0.906 20 C -0.211 4.211 21 N -0.560 5.560 22 Si 0.815 3.185 23 H -0.199 1.199 24 H -0.194 1.194 25 H -0.199 1.199 26 C -0.081 4.081 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.068 0.932 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.260 0.740 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.094 0.906 42 H 0.134 0.866 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.103 0.897 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.958 18.852 -17.207 28.625 hybrid contribution 0.951 -1.036 -0.522 1.500 sum -12.007 17.816 -17.729 27.855 Atomic orbital electron populations 1.22308 0.95142 1.02858 1.02888 1.22403 0.94368 0.94035 0.87603 1.21901 1.01549 0.94449 1.02987 1.88047 1.87111 1.19021 1.37411 1.22372 1.03400 0.83386 0.94068 1.21006 0.76763 0.82200 0.90381 1.90737 1.52970 1.61756 1.39787 1.45583 1.67340 1.07970 1.14690 1.21796 0.93362 0.93360 0.87461 0.90253 1.23109 0.96333 0.98166 1.00487 1.22518 0.92829 0.91875 0.99407 1.63098 1.12248 1.01298 1.48727 1.21948 0.99434 0.91774 0.94387 1.20880 0.84079 0.82405 0.90061 1.90505 1.65132 1.63149 1.31641 1.41907 1.45665 1.15980 1.17694 1.19600 1.27658 1.01191 0.97876 0.90587 1.25982 0.98929 0.96292 0.99925 1.69656 1.45648 1.14751 1.25966 0.85023 0.78183 0.77501 0.77824 1.19878 1.19368 1.19900 1.23281 0.96818 0.91714 0.96323 0.89651 0.91849 0.93300 0.89595 0.92573 0.88851 0.93190 0.87130 0.87258 0.74018 0.91490 0.89397 0.92904 0.93818 0.90632 0.86612 0.76927 0.91325 0.89727 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 9.53 71.98 0.69 -0.94 16 2 C 0.07 0.83 3.34 30.59 0.10 0.93 16 3 C -0.15 -1.71 9.56 71.98 0.69 -1.02 16 4 O -0.40 -7.59 9.52 -129.94 -1.24 -8.82 16 5 C 0.05 0.58 6.23 71.24 0.44 1.02 16 6 C 0.51 10.48 7.91 87.66 0.69 11.17 16 7 O -0.57 -18.80 16.24 16.02 0.26 -18.54 16 8 N -0.70 -10.66 5.23 -435.99 -2.28 -12.94 16 9 C 0.15 3.22 3.31 46.37 0.15 3.37 16 10 H 0.08 2.21 7.73 -2.39 -0.02 2.19 16 11 C -0.14 -3.52 6.64 31.78 0.21 -3.31 16 12 C 0.06 2.03 5.65 86.65 0.49 2.52 16 13 N -0.53 -16.73 4.85 -890.09 -4.32 -21.05 16 14 C 0.06 1.84 5.03 85.56 0.43 2.27 16 15 C 0.44 20.84 7.43 87.66 0.65 21.49 16 16 O -0.62 -34.84 15.12 -3.07 -0.05 -34.89 16 17 N -0.57 -29.32 5.29 -306.98 -1.62 -30.94 16 18 C -0.33 -19.03 9.68 84.04 0.81 -18.22 16 19 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 20 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 21 N -0.92 -49.21 13.05 21.66 0.28 -48.93 16 22 Si 0.99 43.15 29.55 68.60 2.03 45.18 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 26 C 0.05 0.95 6.31 86.77 0.55 1.50 16 27 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.06 0.50 7.87 -2.39 -0.02 0.48 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 30 H 0.09 0.54 7.79 -2.39 -0.02 0.52 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.11 0.67 8.08 -2.39 -0.02 0.65 16 35 H 0.11 0.68 7.87 -2.39 -0.02 0.66 16 36 H 0.42 2.83 8.52 -92.71 -0.79 2.04 16 37 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.04 1.53 7.31 -2.39 -0.02 1.51 16 41 H 0.08 2.13 7.96 -2.39 -0.02 2.11 16 42 H 0.12 3.21 8.07 -2.39 -0.02 3.19 16 43 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 44 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 45 H 0.08 1.21 7.67 -2.38 -0.02 1.19 16 46 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -80.66 381.79 -1.09 -81.75 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: -0.53 Total: 28.54 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: 6.38 Total: 20.63 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -7.94 Total: -113.86 kcal Atomic # 8 Polarization: -61.23 SS G_CDS: -1.02 Total: -62.25 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -80.66 -1.09 -81.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665525418.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.942 kcal (2) G-P(sol) polarization free energy of solvation -80.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds