Wall clock time and date at job start Fri Apr 10 2020 18:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99689 * 2 1 4 4 H 1.09000 * 109.47267 * 329.16792 * 3 2 1 5 5 C 1.50699 * 109.46947 * 89.16648 * 3 2 1 6 6 O 1.21285 * 120.00182 * 5.00378 * 5 3 2 7 7 N 1.34773 * 120.00218 * 184.99564 * 5 3 2 8 8 C 1.46500 * 120.00221 * 179.97438 * 7 5 3 9 9 H 1.08995 * 109.47318 * 325.00454 * 8 7 5 10 10 C 1.53009 * 109.46704 * 85.00657 * 8 7 5 11 11 C 1.52999 * 109.47414 * 205.00142 * 8 7 5 12 12 N 1.46897 * 109.46677 * 55.00102 * 11 8 7 13 13 C 1.46905 * 111.00076 * 180.02562 * 12 11 8 14 14 C 1.50697 * 109.47526 * 180.02562 * 13 12 11 15 15 O 1.21293 * 119.99855 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00255 * 179.97438 * 14 13 12 17 17 C 1.37099 * 120.00469 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99381 * 0.02562 * 17 16 14 19 19 C 1.38937 * 120.00302 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00439 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 120.00333 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47096 * 89.99771 * 21 19 17 23 23 H 1.48497 * 109.47183 * 210.00236 * 21 19 17 24 24 H 1.48501 * 109.46903 * 330.00086 * 21 19 17 25 25 C 1.53003 * 109.46892 * 209.16344 * 3 2 1 26 26 C 1.52994 * 117.49949 * 353.56275 * 25 3 2 27 27 C 1.53000 * 117.49875 * 62.22475 * 25 3 2 28 28 H 1.08996 * 109.46785 * 304.39923 * 1 2 3 29 29 H 1.08999 * 109.47002 * 64.39467 * 1 2 3 30 30 H 1.08993 * 109.46889 * 184.39809 * 1 2 3 31 31 H 0.97002 * 119.99972 * 0.02562 * 7 5 3 32 32 H 1.08995 * 109.47399 * 59.99846 * 10 8 7 33 33 H 1.09002 * 109.46989 * 180.02562 * 10 8 7 34 34 H 1.08999 * 109.46529 * 299.99735 * 10 8 7 35 35 H 1.08999 * 109.47466 * 175.00486 * 11 8 7 36 36 H 1.09006 * 109.47361 * 295.00636 * 11 8 7 37 37 H 1.00901 * 111.00084 * 56.05380 * 12 11 8 38 38 H 1.09002 * 109.46676 * 300.00386 * 13 12 11 39 39 H 1.09006 * 109.47098 * 59.99765 * 13 12 11 40 40 H 0.97008 * 119.99616 * 0.02562 * 16 14 13 41 41 H 0.96996 * 120.00363 * 179.97438 * 20 19 17 42 42 H 1.09006 * 115.54958 * 207.88741 * 25 3 2 43 43 H 1.09001 * 117.50124 * 214.99624 * 26 25 3 44 44 H 1.08993 * 117.50320 * 0.02562 * 26 25 3 45 45 H 1.09002 * 117.49634 * 359.97438 * 27 25 3 46 46 H 1.09000 * 117.50046 * 144.99421 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3518 1.9964 -0.5267 5 6 2.1956 1.7728 1.4207 6 8 1.9481 1.0244 2.3424 7 7 2.6366 3.0223 1.6670 8 6 2.8163 3.4767 3.0481 9 1 2.0462 3.0337 3.6795 10 6 4.1966 3.0482 3.5504 11 6 2.7049 5.0017 3.1019 12 7 1.4279 5.4205 2.5089 13 6 1.2860 6.8823 2.5426 14 6 -0.0332 7.2734 1.9279 15 8 -0.7818 6.4184 1.5038 16 7 -0.3816 8.5730 1.8502 17 6 -1.5819 8.9288 1.2915 18 1 -2.2485 8.1675 0.9139 19 6 -1.9408 10.2686 1.2110 20 7 -3.0912 10.6097 0.6749 21 14 -0.7876 11.5854 1.8634 22 1 0.1285 12.0223 0.7795 23 1 -1.5812 12.7469 2.3391 24 1 0.0066 11.0336 2.9903 25 6 3.3684 1.2591 -0.7030 26 6 3.9047 -0.1136 -1.1137 27 6 3.3866 0.8561 -2.1788 28 1 -0.3633 0.5806 0.8479 29 1 -0.3633 0.4441 -0.9267 30 1 -0.3633 -1.0246 0.0788 31 1 2.8344 3.6210 0.9298 32 1 4.9667 3.4912 2.9190 33 1 4.3302 3.3859 4.5782 34 1 4.2759 1.9618 3.5121 35 1 2.7499 5.3330 4.1393 36 1 3.5283 5.4462 2.5425 37 1 0.6507 4.9709 2.9692 38 1 1.3213 7.2270 3.5761 39 1 2.0996 7.3394 1.9792 40 1 0.2170 9.2567 2.1897 41 1 -3.3419 11.5450 0.6190 42 1 4.0927 2.0053 -0.3761 43 1 4.9819 -0.2707 -1.0571 44 1 3.2899 -0.9837 -0.8835 45 1 2.4310 0.6236 -2.6488 46 1 4.1228 1.3370 -2.8228 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669544624.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:18 Heat of formation + Delta-G solvation = -114.177055 kcal Electronic energy + Delta-G solvation = -26306.192181 eV Core-core repulsion = 22423.928161 eV Total energy + Delta-G solvation = -3882.264020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.28062 -40.29160 -39.13972 -37.67651 -37.02231 -36.05152 -35.11197 -33.73613 -32.35087 -29.53459 -29.06594 -27.14913 -26.59752 -24.51095 -23.23943 -22.87417 -22.00806 -21.26156 -21.12049 -20.25846 -18.72906 -18.08019 -17.68301 -17.24366 -16.98409 -16.73819 -16.34892 -16.05415 -15.69945 -15.65770 -15.34119 -15.09192 -14.92046 -14.69014 -14.43138 -14.26955 -14.04631 -13.94764 -13.41775 -13.13643 -13.00923 -12.80238 -12.71674 -12.56628 -12.41969 -12.40547 -12.25955 -11.98096 -11.84938 -11.71891 -11.50450 -11.35696 -11.10219 -10.44502 -10.24343 -10.23081 -10.01242 -9.34894 -8.40962 -6.02120 1.30755 1.36685 1.45487 1.58723 1.97411 2.07325 2.23719 2.68912 2.74565 2.95682 3.15665 3.39158 3.60884 3.80398 3.86889 3.94428 4.13084 4.17074 4.23306 4.25594 4.36746 4.38923 4.46479 4.48955 4.52983 4.58616 4.66437 4.75922 4.77443 4.79919 4.85940 5.00232 5.06098 5.22386 5.28124 5.36543 5.52710 5.57127 5.89639 5.94910 6.03499 6.28788 6.60174 6.61795 6.88991 7.28386 7.40818 7.98007 8.76841 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.016324 B = 0.002730 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.882020 B =10253.502296 C =10988.860506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.372 6.372 3 C 0.101 3.899 4 H 0.097 0.903 5 C 0.495 3.505 6 O -0.579 6.579 7 N -0.695 5.695 8 C 0.143 3.857 9 H 0.058 0.942 10 C -0.151 4.151 11 C 0.056 3.944 12 N -0.683 5.683 13 C 0.063 3.937 14 C 0.447 3.553 15 O -0.616 6.616 16 N -0.591 5.591 17 C -0.328 4.328 18 H 0.053 0.947 19 C -0.017 4.017 20 N -0.936 5.936 21 Si 0.967 3.033 22 H -0.256 1.256 23 H -0.278 1.278 24 H -0.230 1.230 25 C -0.165 4.165 26 C -0.166 4.166 27 C -0.156 4.156 28 H 0.026 0.974 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.414 0.586 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.041 0.959 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.339 0.661 38 H 0.076 0.924 39 H 0.122 0.878 40 H 0.390 0.610 41 H 0.279 0.721 42 H 0.134 0.866 43 H 0.107 0.893 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.342 -12.899 1.230 24.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.289 6.289 3 C 0.039 3.961 4 H 0.115 0.885 5 C 0.281 3.719 6 O -0.459 6.459 7 N -0.348 5.348 8 C 0.038 3.962 9 H 0.076 0.924 10 C -0.210 4.210 11 C -0.073 4.073 12 N -0.315 5.315 13 C -0.069 4.069 14 C 0.235 3.765 15 O -0.500 6.500 16 N -0.233 5.233 17 C -0.458 4.458 18 H 0.071 0.929 19 C -0.215 4.215 20 N -0.577 5.577 21 Si 0.787 3.213 22 H -0.180 1.180 23 H -0.203 1.203 24 H -0.153 1.153 25 C -0.184 4.184 26 C -0.203 4.203 27 C -0.193 4.193 28 H 0.045 0.955 29 H 0.077 0.923 30 H 0.121 0.879 31 H 0.250 0.750 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.122 0.878 37 H 0.156 0.844 38 H 0.094 0.906 39 H 0.140 0.860 40 H 0.226 0.774 41 H 0.088 0.912 42 H 0.151 0.849 43 H 0.126 0.874 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 20.861 -14.030 0.900 25.156 hybrid contribution -0.885 1.413 0.880 1.885 sum 19.977 -12.616 1.780 23.694 Atomic orbital electron populations 1.22948 0.79878 1.03914 1.00215 1.87917 1.20862 1.25755 1.94412 1.21555 0.96659 0.86493 0.91362 0.88529 1.21546 0.76050 0.82117 0.92202 1.90660 1.52251 1.55712 1.47273 1.45841 1.66229 1.13319 1.09398 1.20988 0.98291 0.93929 0.82973 0.92420 1.22046 0.95358 1.01008 1.02571 1.22378 0.92182 0.93108 0.99612 1.60063 1.04930 1.05244 1.61219 1.21650 0.94262 0.90145 1.00852 1.21074 0.90078 0.81995 0.83333 1.90554 1.55799 1.50612 1.53051 1.42032 1.18149 1.07143 1.55967 1.18990 0.95883 0.93443 1.37454 0.92876 1.26145 0.98522 0.99807 0.97041 1.69810 1.23479 1.19250 1.45182 0.85340 0.78457 0.77505 0.80034 1.18010 1.20305 1.15272 1.22293 0.95405 1.01951 0.98722 1.22908 1.01401 0.93121 1.02855 1.23056 1.03587 1.02582 0.90103 0.95470 0.92294 0.87891 0.74972 0.90331 0.90003 0.94024 0.91842 0.87844 0.84369 0.90572 0.86007 0.77407 0.91178 0.84870 0.87447 0.89177 0.88934 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.79 113.37 1.22 1.82 16 2 O -0.37 -9.53 8.25 -129.99 -1.07 -10.60 16 3 C 0.10 2.29 2.86 29.85 0.09 2.37 16 4 H 0.10 2.08 7.84 -2.39 -0.02 2.06 16 5 C 0.49 13.26 7.03 87.66 0.62 13.87 16 6 O -0.58 -20.43 16.17 15.94 0.26 -20.18 16 7 N -0.70 -14.65 4.68 -442.53 -2.07 -16.72 16 8 C 0.14 2.81 2.81 44.99 0.13 2.93 16 9 H 0.06 1.47 7.58 -2.39 -0.02 1.45 16 10 C -0.15 -2.32 9.48 71.99 0.68 -1.64 16 11 C 0.06 0.93 5.24 86.30 0.45 1.38 16 12 N -0.68 -17.57 5.85 -517.91 -3.03 -20.60 16 13 C 0.06 1.69 6.17 85.56 0.53 2.22 16 14 C 0.45 19.20 7.82 87.66 0.69 19.89 16 15 O -0.62 -33.21 15.78 -3.07 -0.05 -33.25 16 16 N -0.59 -26.83 5.09 -307.00 -1.56 -28.40 16 17 C -0.33 -18.94 10.16 84.04 0.85 -18.09 16 18 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 19 C -0.02 -0.92 5.50 84.92 0.47 -0.45 16 20 N -0.94 -56.08 13.96 21.66 0.30 -55.78 16 21 Si 0.97 37.74 27.74 68.60 1.90 39.65 16 22 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 23 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 24 H -0.23 -7.40 6.52 99.48 0.65 -6.75 16 25 C -0.17 -2.83 5.68 -10.79 -0.06 -2.89 16 26 C -0.17 -2.77 9.87 30.62 0.30 -2.47 16 27 C -0.16 -2.24 10.22 30.62 0.31 -1.92 16 28 H 0.03 0.71 8.10 -2.39 -0.02 0.69 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.41 7.27 8.60 -92.71 -0.80 6.47 16 32 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.34 10.38 8.43 -89.69 -0.76 9.63 16 38 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.12 2.54 8.14 -2.38 -0.02 2.52 16 40 H 0.39 14.42 5.76 -92.70 -0.53 13.89 16 41 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.13 1.82 8.01 -2.38 -0.02 1.80 16 43 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.09 1.84 7.04 -2.39 -0.02 1.82 16 45 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -82.40 386.65 -0.19 -82.59 By element: Atomic # 1 Polarization: 47.40 SS G_CDS: -1.14 Total: 46.26 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 6.27 Total: 17.03 kcal Atomic # 7 Polarization: -115.13 SS G_CDS: -6.36 Total: -121.49 kcal Atomic # 8 Polarization: -63.17 SS G_CDS: -0.86 Total: -64.03 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 1.90 Total: 39.65 kcal Total: -82.40 -0.19 -82.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669544624.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.590 kcal (2) G-P(sol) polarization free energy of solvation -82.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds