Wall clock time and date at job start Fri Apr 10 2020 18:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 113.99853 * 2 1 4 4 C 1.53004 * 109.47188 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46991 * 305.00352 * 4 3 2 6 6 C 1.53006 * 109.46973 * 65.00084 * 4 3 2 7 7 C 1.50695 * 109.47158 * 184.99923 * 4 3 2 8 8 O 1.21282 * 120.00383 * 0.02562 * 7 4 3 9 9 N 1.34779 * 120.00024 * 179.97438 * 7 4 3 10 10 C 1.46496 * 120.00092 * 180.02562 * 9 7 4 11 11 C 1.53008 * 109.47064 * 180.02562 * 10 9 7 12 12 H 1.09001 * 112.78472 * 284.18945 * 11 10 9 13 13 C 1.53509 * 113.47430 * 153.38126 * 11 10 9 14 14 C 1.53517 * 83.57536 * 219.20766 * 13 11 10 15 15 N 1.47473 * 113.47472 * 55.00003 * 11 10 9 16 16 C 1.46895 * 111.00172 * 253.46865 * 15 11 10 17 17 C 1.50696 * 109.47426 * 198.37844 * 16 15 11 18 18 O 1.21296 * 120.00268 * 353.84405 * 17 16 15 19 19 N 1.34777 * 120.00158 * 173.84568 * 17 16 15 20 20 C 1.37097 * 120.00048 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00484 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99941 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99983 * 359.72601 * 22 20 19 24 24 Si 1.86802 * 120.00003 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47235 * 90.00455 * 24 22 20 26 26 H 1.48510 * 109.47052 * 210.00205 * 24 22 20 27 27 H 1.48498 * 109.47106 * 330.00177 * 24 22 20 28 28 H 1.09004 * 109.47364 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47239 * 299.99835 * 1 2 3 30 30 H 1.09001 * 109.46914 * 60.00237 * 1 2 3 31 31 H 1.09004 * 109.47382 * 60.00055 * 3 2 1 32 32 H 1.08993 * 109.47454 * 299.99724 * 3 2 1 33 33 H 1.09002 * 109.47036 * 59.99747 * 6 4 3 34 34 H 1.08993 * 109.47496 * 180.02562 * 6 4 3 35 35 H 1.08997 * 109.46819 * 300.00451 * 6 4 3 36 36 H 0.97004 * 119.99846 * 0.02562 * 9 7 4 37 37 H 1.08997 * 109.47442 * 60.00402 * 10 9 7 38 38 H 1.09000 * 109.47369 * 300.00065 * 10 9 7 39 39 H 1.09002 * 114.17215 * 105.55870 * 13 11 10 40 40 H 1.09000 * 114.17335 * 332.85344 * 13 11 10 41 41 H 1.08995 * 113.47564 * 271.26088 * 14 13 11 42 42 H 1.08998 * 113.52651 * 140.80095 * 14 13 11 43 43 H 1.09003 * 109.47044 * 78.37460 * 16 15 11 44 44 H 1.09004 * 109.46884 * 318.37771 * 16 15 11 45 45 H 0.97002 * 119.99888 * 359.97438 * 19 17 16 46 46 H 0.97000 * 119.99709 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8507 0.5685 0.8427 6 6 3.9962 0.5365 -1.3065 7 6 4.1478 2.5560 0.1245 8 8 3.4347 3.5337 0.2048 9 7 5.4881 2.6960 0.1470 10 6 6.0835 4.0290 0.2679 11 6 7.6088 3.9082 0.2684 12 1 8.0032 3.5454 1.2176 13 6 8.3219 5.1650 -0.2498 14 6 9.2606 4.1484 -0.9147 15 7 8.1414 3.1879 -0.9030 16 6 8.6044 1.8448 -0.5295 17 6 9.5293 1.3175 -1.5959 18 8 9.6912 1.9436 -2.6221 19 7 10.1766 0.1502 -1.4096 20 6 11.0185 -0.3293 -2.3796 21 1 11.1627 0.2282 -3.2933 22 6 11.6863 -1.5325 -2.1872 23 7 11.5151 -2.2082 -1.0732 24 14 12.8328 -2.1861 -3.5092 25 1 14.2057 -1.6722 -3.2721 26 1 12.8453 -3.6705 -3.4640 27 1 12.3589 -1.7355 -4.8425 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.6808 1.1526 -2.1485 34 1 5.0827 0.4500 -1.3059 35 1 3.5532 -0.4553 -1.3960 36 1 6.0586 1.9140 0.0831 37 1 5.7550 4.4906 1.1990 38 1 5.7685 4.6454 -0.5741 39 1 8.7929 5.7643 0.5295 40 1 7.7330 5.7547 -0.9524 41 1 10.0958 3.8497 -0.2813 42 1 9.5746 4.4373 -1.9177 43 1 7.7467 1.1793 -0.4307 44 1 9.1365 1.8951 0.4206 45 1 10.0475 -0.3504 -0.5888 46 1 11.9810 -3.0484 -0.9391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670618637.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:26 Heat of formation + Delta-G solvation = -86.575645 kcal Electronic energy + Delta-G solvation = -26489.467606 eV Core-core repulsion = 22608.400473 eV Total energy + Delta-G solvation = -3881.067133 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.61537 -39.73260 -37.98634 -37.74485 -34.62215 -33.98402 -33.74546 -31.44083 -30.69190 -28.48232 -27.42916 -25.91072 -25.86329 -23.79202 -23.77340 -22.29756 -20.21515 -19.58457 -19.29830 -17.96587 -17.63859 -16.55492 -16.25426 -16.17214 -15.95092 -15.72503 -15.17616 -14.98573 -14.82536 -14.54064 -14.09861 -13.96702 -13.74767 -13.65985 -13.27904 -12.86857 -12.61734 -12.35390 -12.27023 -11.97141 -11.74866 -11.73353 -11.54493 -11.46572 -11.40913 -11.11494 -11.04012 -10.83353 -10.53486 -10.43042 -10.26848 -9.88326 -9.80624 -9.55722 -9.08886 -8.78038 -8.34767 -8.02606 -6.47372 -3.88378 2.56238 2.90335 3.13856 3.23422 3.29152 3.70125 3.81430 3.97063 4.17970 4.42822 4.52987 4.71842 4.74285 4.82804 4.90931 4.98597 5.07973 5.10709 5.17306 5.20233 5.35020 5.38082 5.41612 5.43839 5.46386 5.51387 5.59338 5.70610 5.73737 5.79111 5.82013 5.85729 6.05189 6.14423 6.16633 6.23577 6.37517 6.54775 6.90693 7.14478 7.42540 7.49979 7.99278 8.13146 8.54402 9.12045 9.46902 9.98131 10.70155 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.011671 B = 0.003215 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.458738 B = 8706.657062 C =10692.909763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.082 3.918 4 C -0.111 4.111 5 H 0.105 0.895 6 C -0.142 4.142 7 C 0.522 3.478 8 O -0.549 6.549 9 N -0.717 5.717 10 C 0.141 3.859 11 C 0.003 3.997 12 H 0.083 0.917 13 C -0.137 4.137 14 C 0.016 3.984 15 N -0.437 5.437 16 C 0.007 3.993 17 C 0.441 3.559 18 O -0.577 6.577 19 N -0.562 5.562 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.269 1.269 28 H 0.086 0.914 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.402 0.598 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.056 0.944 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.584 7.196 7.325 17.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C 0.005 3.995 4 C -0.132 4.132 5 H 0.123 0.877 6 C -0.199 4.199 7 C 0.308 3.692 8 O -0.427 6.427 9 N -0.369 5.369 10 C 0.017 3.983 11 C -0.107 4.107 12 H 0.101 0.899 13 C -0.175 4.175 14 C -0.113 4.113 15 N -0.160 5.160 16 C -0.125 4.125 17 C 0.226 3.774 18 O -0.461 6.461 19 N -0.199 5.199 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.178 4.178 23 N -0.542 5.542 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.238 0.762 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.084 0.916 42 H 0.112 0.888 43 H 0.103 0.897 44 H 0.074 0.926 45 H 0.225 0.775 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.177 7.823 6.140 18.145 hybrid contribution 1.183 -1.061 0.694 1.734 sum -13.994 6.762 6.833 16.978 Atomic orbital electron populations 1.22721 0.80823 1.02680 1.00067 1.87819 1.19792 1.27893 1.95515 1.22209 0.91597 0.84170 1.01556 1.21185 0.95233 0.94643 1.02124 0.87652 1.21745 1.01845 1.01629 0.94730 1.20361 0.82364 0.90739 0.75700 1.90685 1.61069 1.40773 1.50215 1.45925 1.06456 1.10307 1.74164 1.21334 0.90646 0.84287 1.02019 1.23848 0.94841 0.96809 0.95229 0.89939 1.23213 0.98440 0.95472 1.00379 1.23538 0.93470 0.91751 1.02518 1.68900 1.19256 0.99656 1.28181 1.22555 0.99092 0.93238 0.97610 1.19604 0.85121 0.83773 0.88910 1.90541 1.67160 1.59198 1.29159 1.41873 1.39693 1.18966 1.19338 1.19690 1.19761 1.04186 0.99276 0.87921 1.25262 0.98569 0.96362 0.97641 1.69608 1.43490 1.16077 1.25007 0.85862 0.79987 0.77755 0.80738 1.20406 1.20867 1.19373 0.89576 0.94091 0.94026 0.92437 0.92467 0.92090 0.91652 0.90543 0.76163 0.91267 0.90740 0.90519 0.88668 0.91569 0.88780 0.89704 0.92594 0.77519 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.30 10.24 -35.23 -0.36 -4.66 16 3 C 0.08 0.90 4.67 37.16 0.17 1.07 16 4 C -0.11 -1.21 2.96 -91.77 -0.27 -1.49 16 5 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 6 C -0.14 -1.57 8.99 37.16 0.33 -1.23 16 7 C 0.52 6.74 7.15 -10.99 -0.08 6.66 16 8 O -0.55 -8.67 15.92 5.56 0.09 -8.58 16 9 N -0.72 -8.54 5.36 -60.29 -0.32 -8.86 16 10 C 0.14 1.63 5.82 -4.04 -0.02 1.61 16 11 C 0.00 0.03 3.25 -71.44 -0.23 -0.20 16 12 H 0.08 0.85 7.63 -51.93 -0.40 0.45 16 13 C -0.14 -1.47 8.00 -26.20 -0.21 -1.68 16 14 C 0.02 0.23 6.34 -7.54 -0.05 0.19 16 15 N -0.44 -6.67 5.74 -237.95 -1.37 -8.03 16 16 C 0.01 0.12 5.09 -4.98 -0.03 0.09 16 17 C 0.44 9.94 7.46 -10.99 -0.08 9.86 16 18 O -0.58 -15.13 14.98 5.54 0.08 -15.05 16 19 N -0.56 -13.72 5.29 -10.96 -0.06 -13.77 16 20 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16 21 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 22 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -23.92 13.05 55.50 0.72 -23.20 16 24 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.64 7.95 -51.93 -0.41 0.22 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.73 7.57 -51.93 -0.39 0.34 16 35 H 0.08 0.82 7.82 -51.93 -0.41 0.41 16 36 H 0.40 4.55 5.75 -40.82 -0.23 4.32 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.95 7.87 -51.93 -0.41 0.54 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.09 1.00 7.94 -51.93 -0.41 0.59 16 41 H 0.07 0.97 7.84 -51.93 -0.41 0.56 16 42 H 0.09 1.58 7.97 -51.93 -0.41 1.16 16 43 H 0.08 1.23 6.56 -51.93 -0.34 0.89 16 44 H 0.06 0.81 7.56 -51.93 -0.39 0.42 16 45 H 0.39 9.11 7.90 -40.82 -0.32 8.79 16 46 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 378.33 15.07 5.70 5.70 Total: -1.00 -32.53 378.33 -7.56 -40.09 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -7.43 Total: 12.21 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: 0.41 Total: 8.49 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -1.02 Total: -53.87 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.19 Total: -28.29 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.53 -7.56 -40.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670618637.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.487 kcal (2) G-P(sol) polarization free energy of solvation -32.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds