Wall clock time and date at job start Fri Apr 10 2020 18:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 113.99853 * 2 1 4 4 C 1.53004 * 109.47188 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46991 * 305.00352 * 4 3 2 6 6 C 1.53006 * 109.46973 * 65.00084 * 4 3 2 7 7 C 1.50695 * 109.47158 * 184.99923 * 4 3 2 8 8 O 1.21282 * 120.00383 * 0.02562 * 7 4 3 9 9 N 1.34779 * 120.00024 * 179.97438 * 7 4 3 10 10 C 1.46496 * 120.00092 * 180.02562 * 9 7 4 11 11 C 1.53008 * 109.47064 * 180.02562 * 10 9 7 12 12 H 1.09001 * 112.78472 * 284.18945 * 11 10 9 13 13 C 1.53509 * 113.47430 * 153.38126 * 11 10 9 14 14 C 1.53517 * 83.57536 * 219.20766 * 13 11 10 15 15 N 1.47473 * 113.47472 * 55.00003 * 11 10 9 16 16 C 1.46895 * 111.00172 * 253.46865 * 15 11 10 17 17 C 1.50696 * 109.47426 * 198.37844 * 16 15 11 18 18 O 1.21296 * 120.00268 * 353.84405 * 17 16 15 19 19 N 1.34777 * 120.00158 * 173.84568 * 17 16 15 20 20 C 1.37097 * 120.00048 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00484 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99941 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99983 * 359.72601 * 22 20 19 24 24 Si 1.86802 * 120.00003 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47235 * 90.00455 * 24 22 20 26 26 H 1.48510 * 109.47052 * 210.00205 * 24 22 20 27 27 H 1.48498 * 109.47106 * 330.00177 * 24 22 20 28 28 H 1.09004 * 109.47364 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47239 * 299.99835 * 1 2 3 30 30 H 1.09001 * 109.46914 * 60.00237 * 1 2 3 31 31 H 1.09004 * 109.47382 * 60.00055 * 3 2 1 32 32 H 1.08993 * 109.47454 * 299.99724 * 3 2 1 33 33 H 1.09002 * 109.47036 * 59.99747 * 6 4 3 34 34 H 1.08993 * 109.47496 * 180.02562 * 6 4 3 35 35 H 1.08997 * 109.46819 * 300.00451 * 6 4 3 36 36 H 0.97004 * 119.99846 * 0.02562 * 9 7 4 37 37 H 1.08997 * 109.47442 * 60.00402 * 10 9 7 38 38 H 1.09000 * 109.47369 * 300.00065 * 10 9 7 39 39 H 1.09002 * 114.17215 * 105.55870 * 13 11 10 40 40 H 1.09000 * 114.17335 * 332.85344 * 13 11 10 41 41 H 1.08995 * 113.47564 * 271.26088 * 14 13 11 42 42 H 1.08998 * 113.52651 * 140.80095 * 14 13 11 43 43 H 1.09003 * 109.47044 * 78.37460 * 16 15 11 44 44 H 1.09004 * 109.46884 * 318.37771 * 16 15 11 45 45 H 0.97002 * 119.99888 * 359.97438 * 19 17 16 46 46 H 0.97000 * 119.99709 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8507 0.5685 0.8427 6 6 3.9962 0.5365 -1.3065 7 6 4.1478 2.5560 0.1245 8 8 3.4347 3.5337 0.2048 9 7 5.4881 2.6960 0.1470 10 6 6.0835 4.0290 0.2679 11 6 7.6088 3.9082 0.2684 12 1 8.0032 3.5454 1.2176 13 6 8.3219 5.1650 -0.2498 14 6 9.2606 4.1484 -0.9147 15 7 8.1414 3.1879 -0.9030 16 6 8.6044 1.8448 -0.5295 17 6 9.5293 1.3175 -1.5959 18 8 9.6912 1.9436 -2.6221 19 7 10.1766 0.1502 -1.4096 20 6 11.0185 -0.3293 -2.3796 21 1 11.1627 0.2282 -3.2933 22 6 11.6863 -1.5325 -2.1872 23 7 11.5151 -2.2082 -1.0732 24 14 12.8328 -2.1861 -3.5092 25 1 14.2057 -1.6722 -3.2721 26 1 12.8453 -3.6705 -3.4640 27 1 12.3589 -1.7355 -4.8425 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.6808 1.1526 -2.1485 34 1 5.0827 0.4500 -1.3059 35 1 3.5532 -0.4553 -1.3960 36 1 6.0586 1.9140 0.0831 37 1 5.7550 4.4906 1.1990 38 1 5.7685 4.6454 -0.5741 39 1 8.7929 5.7643 0.5295 40 1 7.7330 5.7547 -0.9524 41 1 10.0958 3.8497 -0.2813 42 1 9.5746 4.4373 -1.9177 43 1 7.7467 1.1793 -0.4307 44 1 9.1365 1.8951 0.4206 45 1 10.0475 -0.3504 -0.5888 46 1 11.9810 -3.0484 -0.9391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670618637.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:25 Heat of formation + Delta-G solvation = -113.106687 kcal Electronic energy + Delta-G solvation = -26490.618079 eV Core-core repulsion = 22608.400473 eV Total energy + Delta-G solvation = -3882.217606 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.72246 -40.80836 -39.54573 -38.75361 -35.98445 -35.60607 -34.64932 -33.33507 -32.03993 -29.46347 -28.20812 -27.54679 -26.69577 -25.35811 -24.74886 -23.25608 -21.22001 -21.09237 -20.50879 -19.90824 -18.55165 -17.83802 -17.39710 -17.17786 -16.96469 -16.86454 -16.52219 -16.15792 -16.03954 -15.79616 -15.58203 -15.36621 -14.96141 -14.75990 -14.32273 -14.08112 -13.80247 -13.55435 -13.48507 -13.20338 -13.10467 -12.91010 -12.78805 -12.46043 -12.43868 -12.36552 -12.31498 -12.13673 -11.91818 -11.87738 -11.63954 -11.47670 -10.84107 -10.66539 -10.31696 -10.07995 -10.01671 -9.78179 -8.47240 -5.95416 1.36931 1.41686 1.53652 1.55839 1.98597 2.05020 2.28122 2.79357 2.96842 3.19303 3.26406 3.56288 3.61958 3.79551 3.85594 3.94966 4.08903 4.17974 4.27369 4.31429 4.36552 4.44166 4.46211 4.50332 4.53011 4.62619 4.64602 4.69003 4.84766 4.85396 4.87171 4.89995 4.96401 5.01236 5.20021 5.25543 5.32310 5.41073 5.47809 5.91771 6.09450 6.15351 6.46092 6.59791 7.12795 7.15036 7.55602 8.11515 8.69898 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.011671 B = 0.003215 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.458738 B = 8706.657062 C =10692.909763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.406 6.406 3 C 0.086 3.914 4 C -0.106 4.106 5 H 0.122 0.878 6 C -0.137 4.137 7 C 0.522 3.478 8 O -0.581 6.581 9 N -0.712 5.712 10 C 0.142 3.858 11 C 0.016 3.984 12 H 0.106 0.894 13 C -0.116 4.116 14 C 0.006 3.994 15 N -0.463 5.463 16 C 0.020 3.980 17 C 0.440 3.560 18 O -0.618 6.618 19 N -0.572 5.572 20 C -0.332 4.332 21 H 0.076 0.924 22 C -0.010 4.010 23 N -0.918 5.918 24 Si 0.989 3.011 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.275 1.275 28 H 0.101 0.899 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.406 0.594 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.107 0.893 44 H 0.082 0.918 45 H 0.397 0.603 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.967 7.014 8.831 18.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C 0.008 3.992 4 C -0.127 4.127 5 H 0.140 0.860 6 C -0.195 4.195 7 C 0.309 3.691 8 O -0.461 6.461 9 N -0.363 5.363 10 C 0.018 3.982 11 C -0.094 4.094 12 H 0.124 0.876 13 C -0.154 4.154 14 C -0.123 4.123 15 N -0.186 5.186 16 C -0.112 4.112 17 C 0.227 3.773 18 O -0.504 6.504 19 N -0.209 5.209 20 C -0.461 4.461 21 H 0.094 0.906 22 C -0.210 4.210 23 N -0.559 5.559 24 Si 0.813 3.187 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.200 1.200 28 H 0.120 0.880 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.243 0.757 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.126 0.874 40 H 0.114 0.886 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.125 0.875 44 H 0.100 0.900 45 H 0.231 0.769 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.560 7.631 7.673 18.953 hybrid contribution 1.255 -0.961 0.207 1.594 sum -14.305 6.669 7.880 17.641 Atomic orbital electron populations 1.22934 0.79332 1.03980 1.00772 1.87790 1.21499 1.27680 1.95595 1.22120 0.91644 0.84305 1.01088 1.21170 0.95215 0.93714 1.02587 0.86021 1.21697 1.01668 1.01628 0.94495 1.20647 0.82458 0.91014 0.75005 1.90670 1.61761 1.41882 1.51805 1.45928 1.06273 1.10677 1.73466 1.21360 0.90630 0.83978 1.02196 1.23872 0.94569 0.96180 0.94762 0.87609 1.23157 0.96772 0.94948 1.00510 1.23540 0.94108 0.93503 1.01173 1.68905 1.19682 0.99207 1.30821 1.22467 0.98555 0.94247 0.95938 1.20695 0.84538 0.82523 0.89555 1.90517 1.68377 1.60094 1.31443 1.41927 1.40042 1.19840 1.19108 1.19602 1.21858 1.05115 0.99546 0.90566 1.25969 0.99426 0.96029 0.99587 1.69657 1.43921 1.16347 1.25950 0.84987 0.78189 0.77613 0.77933 1.19683 1.19537 1.19966 0.88033 0.93210 0.93523 0.92611 0.93271 0.92987 0.91816 0.90161 0.75709 0.89744 0.92161 0.87447 0.88551 0.91647 0.92077 0.87470 0.89996 0.76947 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.41 -8.44 10.24 -148.98 -1.53 -9.96 16 3 C 0.09 1.82 4.67 71.98 0.34 2.15 16 4 C -0.11 -2.19 2.96 -11.54 -0.03 -2.22 16 5 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 6 C -0.14 -2.91 8.99 71.98 0.65 -2.26 16 7 C 0.52 12.81 7.15 87.65 0.63 13.44 16 8 O -0.58 -17.86 15.92 -3.04 -0.05 -17.91 16 9 N -0.71 -15.61 5.36 -463.06 -2.48 -18.09 16 10 C 0.14 2.96 5.82 86.38 0.50 3.46 16 11 C 0.02 0.31 3.25 42.19 0.14 0.45 16 12 H 0.11 1.71 7.63 -2.39 -0.02 1.69 16 13 C -0.12 -2.21 8.00 30.94 0.25 -1.96 16 14 C 0.01 0.16 6.34 83.58 0.53 0.69 16 15 N -0.46 -13.50 5.74 -906.73 -5.21 -18.71 16 16 C 0.02 0.61 5.09 85.56 0.44 1.04 16 17 C 0.44 19.97 7.46 87.66 0.65 20.62 16 18 O -0.62 -33.39 14.98 -3.08 -0.05 -33.44 16 19 N -0.57 -28.19 5.29 -306.98 -1.62 -29.82 16 20 C -0.33 -18.41 9.68 84.04 0.81 -17.60 16 21 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 22 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 23 N -0.92 -48.26 13.05 21.66 0.28 -47.98 16 24 Si 0.99 42.30 29.55 68.60 2.03 44.33 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 27 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 28 H 0.10 1.12 8.14 -2.39 -0.02 1.11 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 1.19 7.95 -2.39 -0.02 1.17 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 1.35 7.57 -2.39 -0.02 1.33 16 35 H 0.08 1.64 7.82 -2.39 -0.02 1.62 16 36 H 0.41 8.26 5.75 -92.71 -0.53 7.73 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.54 16 38 H 0.06 1.45 7.87 -2.39 -0.02 1.43 16 39 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.10 1.85 7.94 -2.39 -0.02 1.83 16 41 H 0.07 1.85 7.84 -2.39 -0.02 1.83 16 42 H 0.06 2.12 7.97 -2.39 -0.02 2.10 16 43 H 0.11 2.85 6.56 -2.39 -0.02 2.84 16 44 H 0.08 2.15 7.56 -2.38 -0.02 2.13 16 45 H 0.40 18.42 7.90 -92.71 -0.73 17.68 16 46 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -71.46 378.33 -2.28 -73.75 By element: Atomic # 1 Polarization: 38.73 SS G_CDS: -0.27 Total: 38.45 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: 6.61 Total: 19.38 kcal Atomic # 7 Polarization: -105.57 SS G_CDS: -9.03 Total: -114.59 kcal Atomic # 8 Polarization: -59.69 SS G_CDS: -1.62 Total: -61.31 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -71.46 -2.28 -73.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670618637.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.361 kcal (2) G-P(sol) polarization free energy of solvation -71.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds