Wall clock time and date at job start Fri Apr 10 2020 18:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47158 * 2 1 4 4 H 1.08999 * 109.47148 * 305.18437 * 3 2 1 5 5 O 1.42897 * 109.47130 * 65.18269 * 3 2 1 6 6 C 1.42895 * 114.00335 * 209.39887 * 5 3 2 7 7 C 1.50698 * 109.47332 * 185.18118 * 3 2 1 8 8 O 1.21280 * 120.00238 * 245.00755 * 7 3 2 9 9 N 1.34781 * 119.99955 * 65.00013 * 7 3 2 10 10 C 1.46502 * 119.99852 * 0.02562 * 9 7 3 11 11 C 1.46501 * 120.00114 * 180.02562 * 9 7 3 12 12 C 1.53511 * 114.17050 * 119.99992 * 11 9 7 13 13 N 1.47480 * 87.93328 * 87.62162 * 12 11 9 14 14 C 1.46905 * 111.00172 * 138.70201 * 13 12 11 15 15 C 1.50694 * 109.47025 * 170.00394 * 14 13 12 16 16 O 1.21292 * 120.00552 * 359.97438 * 15 14 13 17 17 N 1.34781 * 120.00127 * 180.02562 * 15 14 13 18 18 C 1.37086 * 120.00428 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00293 * 359.97438 * 18 17 15 20 20 C 1.38953 * 120.00207 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99759 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00164 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46921 * 59.99872 * 22 20 18 24 24 H 1.48498 * 109.46928 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47288 * 300.00151 * 22 20 18 26 26 C 1.47481 * 87.83341 * 27.00911 * 13 12 11 27 27 H 1.08991 * 109.47708 * 54.88532 * 1 2 3 28 28 H 1.09001 * 109.47333 * 174.88867 * 1 2 3 29 29 H 1.09006 * 109.46780 * 294.88167 * 1 2 3 30 30 H 1.09008 * 109.46712 * 240.00182 * 2 1 3 31 31 H 1.08994 * 109.47525 * 120.00616 * 2 1 3 32 32 H 1.09004 * 109.47379 * 184.84737 * 6 5 3 33 33 H 1.09003 * 109.46881 * 304.84650 * 6 5 3 34 34 H 1.09002 * 109.47015 * 64.84298 * 6 5 3 35 35 H 1.08996 * 109.47068 * 270.00073 * 10 9 7 36 36 H 1.08998 * 109.46736 * 30.00185 * 10 9 7 37 37 H 1.08999 * 109.46888 * 150.00033 * 10 9 7 38 38 H 1.08997 * 113.38254 * 346.92240 * 11 9 7 39 39 H 1.09000 * 113.47851 * 332.85275 * 12 11 9 40 40 H 1.09001 * 113.47668 * 202.39111 * 12 11 9 41 41 H 1.09000 * 109.46806 * 50.00165 * 14 13 12 42 42 H 1.09008 * 109.46853 * 290.00211 * 14 13 12 43 43 H 0.97010 * 119.99210 * 359.97438 * 17 15 14 44 44 H 0.96997 * 119.99826 * 180.02562 * 21 20 18 45 45 H 1.09006 * 113.47632 * 87.75508 * 26 13 12 46 46 H 1.09008 * 113.47689 * 218.21806 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6028 1.9824 -0.8399 5 8 1.6656 2.0800 1.2228 6 6 1.4724 3.4911 1.1072 7 6 3.5414 1.4444 -0.1283 8 8 4.2273 1.8601 0.7815 9 7 4.1222 0.9841 -1.2541 10 6 3.2937 0.4823 -2.3532 11 6 5.5819 0.9855 -1.3786 12 6 6.1955 -0.4048 -1.5959 13 7 5.9940 -0.2088 -3.0437 14 6 7.1513 -0.6947 -3.8069 15 6 6.8150 -0.7070 -5.2758 16 8 5.7189 -0.3469 -5.6501 17 7 7.7318 -1.1191 -6.1737 18 6 7.4261 -1.1298 -7.5100 19 1 6.4504 -0.8085 -7.8433 20 6 8.3715 -1.5542 -8.4356 21 7 9.5589 -1.9448 -8.0301 22 14 7.9547 -1.5695 -10.2565 23 1 7.6132 -0.1933 -10.6976 24 1 9.1244 -2.0613 -11.0279 25 1 6.7949 -2.4667 -10.4913 26 6 6.0909 1.2432 -2.8038 27 1 -0.3634 0.5911 -0.8405 28 1 -0.3634 -1.0236 -0.0916 29 1 -0.3633 0.4324 0.9323 30 1 1.8932 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.2750 3.9129 2.0928 33 1 2.3698 3.9477 0.6898 34 1 0.6250 3.6893 0.4508 35 1 3.1236 -0.5862 -2.2215 36 1 2.3372 1.0050 -2.3551 37 1 3.8039 0.6549 -3.3008 38 1 6.0809 1.5787 -0.6124 39 1 5.5957 -1.2141 -1.1796 40 1 7.2450 -0.4660 -1.3079 41 1 7.4019 -1.7048 -3.4830 42 1 8.0026 -0.0360 -3.6346 43 1 8.6083 -1.4074 -5.8742 44 1 10.2190 -2.2407 -8.6762 45 1 7.1125 1.6218 -2.8382 46 1 5.4023 1.8306 -3.4113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671111295.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:40 Heat of formation + Delta-G solvation = -87.424199 kcal Electronic energy + Delta-G solvation = -26789.099214 eV Core-core repulsion = 22907.995285 eV Total energy + Delta-G solvation = -3881.103929 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.08452 -40.73195 -39.59568 -38.32453 -36.27333 -35.86489 -34.29806 -33.25544 -31.44295 -28.89435 -28.19461 -27.40870 -26.93427 -26.75572 -24.95739 -23.01194 -21.71432 -21.07476 -19.90494 -19.74423 -18.69592 -17.85896 -17.77804 -17.24068 -16.86662 -16.44949 -16.42713 -16.40424 -15.85260 -15.72211 -15.40016 -15.06842 -14.78165 -14.64411 -14.31091 -14.10029 -13.65273 -13.51855 -13.40900 -13.39245 -13.08403 -12.98757 -12.87946 -12.60415 -12.45831 -12.42419 -12.18758 -12.04878 -11.95699 -11.89785 -11.68572 -11.57003 -11.46773 -10.41756 -10.27551 -9.98850 -9.75239 -9.67986 -8.44975 -5.93280 1.40314 1.41991 1.42215 1.52669 1.78526 2.09059 2.29351 2.75667 2.81532 3.21535 3.33950 3.37473 3.51287 3.76110 3.82474 3.87708 4.15090 4.25704 4.28527 4.35735 4.39565 4.42358 4.45263 4.49671 4.53327 4.56906 4.60861 4.67657 4.78183 4.81069 4.81418 4.83890 5.05906 5.16480 5.19106 5.29898 5.42132 5.43013 5.49566 5.84728 5.99529 6.07298 6.35304 6.62773 7.04654 7.15173 7.59622 8.15511 8.72332 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.026969 B = 0.002513 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.992256 B =11139.621254 C =11615.994243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.122 4.122 3 C 0.079 3.921 4 H 0.109 0.891 5 O -0.378 6.378 6 C 0.025 3.975 7 C 0.489 3.511 8 O -0.572 6.572 9 N -0.583 5.583 10 C 0.078 3.922 11 C 0.117 3.883 12 C -0.006 4.006 13 N -0.458 5.458 14 C 0.020 3.980 15 C 0.445 3.555 16 O -0.614 6.614 17 N -0.578 5.578 18 C -0.330 4.330 19 H 0.079 0.921 20 C -0.015 4.015 21 N -0.922 5.922 22 Si 0.991 3.009 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.272 1.272 26 C -0.004 4.004 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.031 0.969 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.395 0.605 44 H 0.277 0.723 45 H 0.093 0.907 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.570 5.664 16.047 21.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.160 4.160 3 C 0.018 3.982 4 H 0.127 0.873 5 O -0.295 6.295 6 C -0.071 4.071 7 C 0.278 3.722 8 O -0.451 6.451 9 N -0.315 5.315 10 C -0.064 4.064 11 C 0.012 3.988 12 C -0.136 4.136 13 N -0.181 5.181 14 C -0.112 4.112 15 C 0.233 3.767 16 O -0.499 6.499 17 N -0.216 5.216 18 C -0.460 4.460 19 H 0.097 0.903 20 C -0.214 4.214 21 N -0.564 5.564 22 Si 0.815 3.185 23 H -0.197 1.197 24 H -0.197 1.197 25 H -0.197 1.197 26 C -0.134 4.134 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.116 0.884 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.129 0.871 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.125 0.875 42 H 0.102 0.898 43 H 0.229 0.771 44 H 0.086 0.914 45 H 0.111 0.889 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.391 5.646 15.975 21.596 hybrid contribution 1.585 0.217 -0.841 1.808 sum -11.805 5.863 15.134 20.070 Atomic orbital electron populations 1.21683 0.92945 1.02879 1.02536 1.21762 0.98500 0.91719 1.03983 1.22248 0.88631 0.97814 0.89508 0.87339 1.87953 1.88131 1.21999 1.31455 1.23001 0.99938 0.80097 1.04082 1.22011 0.92520 0.76484 0.81207 1.90660 1.65987 1.48340 1.40121 1.47563 1.05754 1.61600 1.16617 1.22071 0.94863 0.99761 0.89704 1.21994 0.81444 0.97866 0.97487 1.24351 1.01999 0.98287 0.88961 1.68839 1.35663 1.07253 1.06312 1.22401 0.94054 1.03550 0.91209 1.20717 0.85116 0.82219 0.88679 1.90471 1.24496 1.53385 1.81587 1.41961 1.15000 1.58551 1.06091 1.19601 1.00457 1.42963 0.82980 0.90305 1.26018 0.94768 0.96187 1.04423 1.69666 1.05375 1.44265 1.37061 0.85015 0.77848 0.78770 0.76882 1.19706 1.19672 1.19695 1.24312 1.01998 0.91803 0.95294 0.91476 0.91223 0.92579 0.88379 0.91852 0.88243 0.95020 0.91607 0.91403 0.89335 0.90581 0.87062 0.89284 0.88196 0.87508 0.89801 0.77135 0.91403 0.88878 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.76 71.98 0.70 -1.07 16 2 C -0.12 -1.96 5.38 30.59 0.16 -1.79 16 3 C 0.08 1.52 1.70 29.85 0.05 1.57 16 4 H 0.11 1.57 6.82 -2.39 -0.02 1.55 16 5 O -0.38 -8.33 9.52 -129.99 -1.24 -9.56 16 6 C 0.02 0.41 10.79 113.37 1.22 1.63 16 7 C 0.49 12.35 7.02 87.66 0.62 12.96 16 8 O -0.57 -18.81 16.02 15.96 0.26 -18.56 16 9 N -0.58 -13.58 3.11 -821.61 -2.56 -16.14 16 10 C 0.08 1.63 8.01 127.77 1.02 2.65 16 11 C 0.12 2.79 4.66 45.44 0.21 3.01 16 12 C -0.01 -0.14 7.31 83.57 0.61 0.47 16 13 N -0.46 -13.40 4.40 -932.55 -4.10 -17.50 16 14 C 0.02 0.63 5.30 85.55 0.45 1.08 16 15 C 0.45 20.47 7.85 87.65 0.69 21.16 16 16 O -0.61 -32.77 16.01 -3.07 -0.05 -32.82 16 17 N -0.58 -29.08 5.29 -306.99 -1.62 -30.70 16 18 C -0.33 -18.49 9.68 84.04 0.81 -17.68 16 19 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 20 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 21 N -0.92 -49.47 13.05 21.66 0.28 -49.19 16 22 Si 0.99 42.50 29.55 68.60 2.03 44.53 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 26 C 0.00 -0.12 6.72 83.57 0.56 0.45 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.77 7.96 -2.38 -0.02 0.75 16 30 H 0.10 1.42 5.06 -2.38 -0.01 1.41 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.10 1.35 8.14 -2.39 -0.02 1.34 16 33 H 0.03 0.59 8.11 -2.39 -0.02 0.57 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 1.36 6.95 -2.39 -0.02 1.34 16 36 H 0.09 1.34 6.11 -2.39 -0.01 1.33 16 37 H 0.08 2.07 5.68 -2.39 -0.01 2.06 16 38 H 0.11 2.71 7.29 -2.39 -0.02 2.69 16 39 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.10 1.84 7.91 -2.39 -0.02 1.83 16 41 H 0.11 3.06 8.08 -2.39 -0.02 3.04 16 42 H 0.08 2.33 7.30 -2.38 -0.02 2.31 16 43 H 0.40 18.91 7.90 -92.70 -0.73 18.18 16 44 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 45 H 0.09 2.18 7.42 -2.38 -0.02 2.16 16 46 H 0.08 2.24 7.25 -2.38 -0.02 2.23 16 Total: -1.00 -72.67 372.13 0.84 -71.82 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: 0.26 Total: 33.97 kcal Atomic # 6 Polarization: 16.55 SS G_CDS: 7.59 Total: 24.14 kcal Atomic # 7 Polarization: -105.53 SS G_CDS: -8.00 Total: -113.53 kcal Atomic # 8 Polarization: -59.91 SS G_CDS: -1.03 Total: -60.94 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -72.67 0.84 -71.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671111295.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.600 kcal (2) G-P(sol) polarization free energy of solvation -72.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds