Wall clock time and date at job start Fri Apr 10 2020 18:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46906 * 109.46815 * 2 1 4 4 C 1.47014 * 110.99967 * 64.79277 * 3 2 1 5 5 C 1.53098 * 109.28921 * 177.62446 * 4 3 2 6 6 O 1.43018 * 109.25580 * 56.83435 * 5 4 3 7 7 C 1.43017 * 113.73439 * 301.32267 * 6 5 4 8 8 C 1.47015 * 111.03455 * 301.13493 * 3 2 1 9 9 H 1.08991 * 109.47332 * 62.41642 * 8 3 2 10 10 C 1.50707 * 109.50569 * 302.30690 * 8 3 2 11 11 O 1.21283 * 120.00126 * 331.91544 * 10 8 3 12 12 N 1.34779 * 119.99669 * 151.92128 * 10 8 3 13 13 C 1.46503 * 119.99689 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.46740 * 179.97438 * 13 12 10 15 15 O 1.42895 * 112.94920 * 55.33282 * 14 13 12 16 16 C 1.53947 * 113.74146 * 283.73635 * 14 13 12 17 17 N 1.47806 * 86.03894 * 222.08639 * 16 14 13 18 18 C 1.36938 * 134.45905 * 204.63990 * 17 16 14 19 19 H 1.08002 * 120.00292 * 179.86871 * 18 17 16 20 20 C 1.38813 * 119.99822 * 359.87772 * 18 17 16 21 21 N 1.31623 * 120.00169 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99883 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47068 * 89.99701 * 22 20 18 24 24 H 1.48504 * 109.46803 * 209.99372 * 22 20 18 25 25 H 1.48501 * 109.47237 * 329.99344 * 22 20 18 26 26 C 1.47585 * 91.04941 * 24.55284 * 17 16 14 27 27 H 1.09000 * 109.46930 * 60.00219 * 1 2 3 28 28 H 1.09003 * 109.46907 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47171 * 300.00275 * 1 2 3 30 30 H 1.08999 * 109.47171 * 239.99724 * 2 1 3 31 31 H 1.09000 * 109.46930 * 119.99781 * 2 1 3 32 32 H 1.09003 * 109.50639 * 57.67523 * 4 3 2 33 33 H 1.08995 * 109.50884 * 297.58543 * 4 3 2 34 34 H 1.09003 * 109.50056 * 176.76047 * 5 4 3 35 35 H 1.08997 * 109.51321 * 296.85037 * 5 4 3 36 36 H 1.09001 * 109.50348 * 178.60933 * 7 6 5 37 37 H 1.09001 * 109.50799 * 298.69540 * 7 6 5 38 38 H 0.96995 * 119.99873 * 359.97438 * 12 10 8 39 39 H 1.08997 * 109.46812 * 299.99404 * 13 12 10 40 40 H 1.08994 * 109.47030 * 59.99767 * 13 12 10 41 41 H 0.96708 * 113.99583 * 309.66616 * 15 14 13 42 42 H 1.09003 * 113.76706 * 336.35854 * 16 14 13 43 43 H 1.09004 * 113.76878 * 107.74675 * 16 14 13 44 44 H 0.96996 * 120.00356 * 180.02562 * 21 20 18 45 45 H 1.09000 * 113.76641 * 221.14917 * 26 17 16 46 46 H 1.08997 * 113.77133 * 89.75161 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.6441 2.0766 1.2418 5 6 2.2230 3.4938 1.2264 6 8 1.7570 4.1810 0.0619 7 6 2.1066 3.5358 -1.1657 8 6 1.5266 2.1190 -1.1745 9 1 0.4385 2.1710 -1.1401 10 6 1.9578 1.4066 -2.4306 11 8 2.9713 0.7405 -2.4325 12 7 1.2171 1.5098 -3.5519 13 6 1.6359 0.8168 -4.7728 14 6 0.6279 1.0966 -5.8893 15 8 0.4307 2.4921 -6.1251 16 6 -0.6823 0.2994 -5.7555 17 7 -0.5826 0.0878 -7.2150 18 6 -1.4855 -0.1786 -8.2094 19 1 -1.1483 -0.2906 -9.2293 20 6 -2.8344 -0.3045 -7.9066 21 7 -3.2454 -0.1683 -6.6636 22 14 -4.0662 -0.6672 -9.2632 23 1 -4.2176 -2.1367 -9.4144 24 1 -5.3790 -0.0678 -8.9129 25 1 -3.5814 -0.0854 -10.5406 26 6 0.8799 0.2810 -7.1704 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.0418 1.5304 2.0972 33 1 0.5579 2.1279 1.3157 34 1 1.8988 4.0291 2.1189 35 1 3.3116 3.4423 1.2082 36 1 1.6983 4.1015 -2.0032 37 1 3.1918 3.4861 -1.2546 38 1 0.4064 2.0423 -3.5502 39 1 2.6206 1.1743 -5.0738 40 1 1.6806 -0.2558 -4.5845 41 1 0.2429 3.0033 -5.3259 42 1 -0.5823 -0.6152 -5.1710 43 1 -1.5370 0.9059 -5.4557 44 1 -4.1879 -0.2567 -6.4520 45 1 1.2702 0.8729 -7.9983 46 1 1.4397 -0.6390 -7.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672093909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:48 Heat of formation + Delta-G solvation = -51.395403 kcal Electronic energy + Delta-G solvation = -27567.881629 eV Core-core repulsion = 23688.340025 eV Total energy + Delta-G solvation = -3879.541604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.82617 -39.30985 -38.34162 -36.43949 -34.90259 -34.05204 -32.10896 -31.76853 -30.99442 -28.64168 -27.02032 -26.08222 -25.07127 -24.66310 -22.93992 -22.11188 -21.11414 -19.93692 -19.33036 -17.76036 -16.90797 -16.77888 -16.76030 -16.28568 -15.67754 -15.40190 -15.16086 -14.97995 -14.63897 -14.36939 -14.15015 -14.04238 -13.85524 -13.60169 -13.13919 -13.06291 -12.71724 -12.52108 -12.28900 -12.15845 -12.04053 -11.92126 -11.77399 -11.09949 -10.95926 -10.94924 -10.87196 -10.77811 -10.46076 -10.22116 -9.95068 -9.65372 -9.51203 -9.26856 -8.99250 -8.84966 -8.60748 -6.93166 -5.80323 -3.11883 2.50002 2.92103 3.37892 3.42242 3.42782 3.44740 3.68269 4.40751 4.46291 4.50064 4.55157 4.59236 4.71797 4.84937 4.88442 4.98048 5.00766 5.07328 5.17735 5.21644 5.24280 5.25246 5.37540 5.45055 5.54662 5.58575 5.66076 5.70078 5.79136 5.97668 6.02065 6.25727 6.36372 6.48119 6.52612 6.56199 6.66755 6.75280 6.96360 7.12273 7.42278 7.46252 7.92721 8.07935 8.18156 9.00507 9.67149 10.52697 11.37113 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.021355 B = 0.003093 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.856729 B = 9050.486282 C = 9394.852887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.044 3.956 3 N -0.512 5.512 4 C 0.015 3.985 5 C 0.060 3.940 6 O -0.378 6.378 7 C 0.077 3.923 8 C 0.028 3.972 9 H 0.075 0.925 10 C 0.521 3.479 11 O -0.519 6.519 12 N -0.723 5.723 13 C 0.104 3.896 14 C 0.064 3.936 15 O -0.526 6.526 16 C 0.145 3.855 17 N -0.602 5.602 18 C -0.219 4.219 19 H 0.081 0.919 20 C -0.008 4.008 21 N -0.923 5.923 22 Si 0.914 3.086 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.136 3.864 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.399 0.601 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.362 0.638 42 H 0.033 0.967 43 H 0.078 0.922 44 H 0.253 0.747 45 H 0.056 0.944 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.779 6.121 17.228 20.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.084 4.084 3 N -0.237 5.237 4 C -0.113 4.113 5 C -0.017 4.017 6 O -0.296 6.296 7 C -0.001 4.001 8 C -0.085 4.085 9 H 0.093 0.907 10 C 0.305 3.695 11 O -0.394 6.394 12 N -0.377 5.377 13 C -0.021 4.021 14 C 0.021 3.979 15 O -0.329 6.329 16 C 0.019 3.981 17 N -0.328 5.328 18 C -0.346 4.346 19 H 0.099 0.901 20 C -0.204 4.204 21 N -0.571 5.571 22 Si 0.744 3.256 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.010 3.990 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.118 0.882 35 H 0.080 0.920 36 H 0.123 0.877 37 H 0.086 0.914 38 H 0.233 0.767 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.208 0.792 42 H 0.051 0.949 43 H 0.096 0.904 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.724 5.545 16.414 20.375 hybrid contribution -2.094 -0.304 -0.018 2.116 sum 8.629 5.241 16.396 19.255 Atomic orbital electron populations 1.22460 0.97824 1.03090 1.01976 1.22314 0.92950 0.88985 1.04128 1.62227 1.58875 1.02216 1.00370 1.22868 0.99617 0.95811 0.93001 1.22731 0.99117 0.91287 0.88538 1.88023 1.78535 1.49155 1.13896 1.22553 1.00442 0.89546 0.87578 1.22347 0.99778 0.95650 0.90684 0.90715 1.20100 0.83912 0.81510 0.83979 1.90709 1.24595 1.39871 1.84179 1.46007 1.28002 1.52396 1.11248 1.22061 0.98863 0.97925 0.83216 1.23754 0.96276 0.82909 0.94972 1.86626 1.93485 1.17701 1.35104 1.22924 0.93511 0.95303 0.86392 1.45701 1.00076 1.83561 1.03452 1.19007 0.86741 1.41330 0.87533 0.90097 1.24762 0.96744 1.02282 0.96651 1.69794 1.14565 1.56056 1.16674 0.86090 0.80792 0.77853 0.80860 1.21631 1.21620 1.20565 1.22548 0.88450 0.94624 0.93417 0.92329 0.91468 0.92479 0.89283 0.90265 0.89159 0.93292 0.88204 0.91976 0.87724 0.91371 0.76695 0.91010 0.90304 0.79247 0.94899 0.90428 0.93710 0.92616 0.93245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.90 9.21 37.16 0.34 -1.56 16 2 C 0.04 0.47 5.65 -3.82 -0.02 0.44 16 3 N -0.51 -5.49 4.48 -227.72 -1.02 -6.51 16 4 C 0.02 0.12 5.30 -3.71 -0.02 0.10 16 5 C 0.06 0.48 7.01 37.21 0.26 0.74 16 6 O -0.38 -3.86 10.83 -35.23 -0.38 -4.24 16 7 C 0.08 0.75 6.27 37.21 0.23 0.99 16 8 C 0.03 0.30 1.88 -68.75 -0.13 0.17 16 9 H 0.08 0.76 6.42 -51.93 -0.33 0.42 16 10 C 0.52 6.78 6.01 -10.98 -0.07 6.72 16 11 O -0.52 -8.58 15.39 5.55 0.09 -8.50 16 12 N -0.72 -8.89 5.33 -60.29 -0.32 -9.21 16 13 C 0.10 1.52 5.26 -4.04 -0.02 1.50 16 14 C 0.06 1.13 1.49 -89.69 -0.13 1.00 16 15 O -0.53 -9.29 13.50 -35.23 -0.48 -9.76 16 16 C 0.14 3.23 6.92 -2.84 -0.02 3.21 16 17 N -0.60 -15.35 3.70 -177.58 -0.66 -16.01 16 18 C -0.22 -6.17 10.70 -15.06 -0.16 -6.33 16 19 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 21 N -0.92 -27.02 11.39 55.49 0.63 -26.38 16 22 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 26 C 0.14 2.77 8.34 -2.96 -0.02 2.75 16 27 H 0.06 0.63 6.44 -51.93 -0.33 0.29 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.50 6.57 -51.93 -0.34 0.15 16 30 H 0.09 1.17 6.26 -51.93 -0.32 0.84 16 31 H 0.08 0.74 8.13 -51.93 -0.42 0.31 16 32 H 0.09 0.61 8.13 -51.93 -0.42 0.19 16 33 H 0.05 0.41 6.55 -51.93 -0.34 0.07 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.40 4.17 7.42 -40.82 -0.30 3.87 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.08 1.22 8.09 -51.93 -0.42 0.80 16 41 H 0.36 4.68 7.73 45.56 0.35 5.04 16 42 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 43 H 0.08 1.91 7.17 -51.93 -0.37 1.54 16 44 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.05 0.92 8.10 -51.93 -0.42 0.50 16 LS Contribution 363.24 15.07 5.47 5.47 Total: -1.00 -34.40 363.24 -8.15 -42.55 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.61 Total: 6.04 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 0.14 Total: 9.39 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -1.37 Total: -58.11 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.77 Total: -22.50 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.40 -8.15 -42.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672093909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.844 kcal (2) G-P(sol) polarization free energy of solvation -34.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds