Wall clock time and date at job start Fri Apr 10 2020 18:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46906 * 109.46815 * 2 1 4 4 C 1.47014 * 110.99967 * 64.79277 * 3 2 1 5 5 C 1.53098 * 109.28921 * 177.62446 * 4 3 2 6 6 O 1.43018 * 109.25580 * 56.83435 * 5 4 3 7 7 C 1.43017 * 113.73439 * 301.32267 * 6 5 4 8 8 C 1.47015 * 111.03455 * 301.13493 * 3 2 1 9 9 H 1.08991 * 109.47332 * 62.41642 * 8 3 2 10 10 C 1.50707 * 109.50569 * 302.30690 * 8 3 2 11 11 O 1.21283 * 120.00126 * 331.91544 * 10 8 3 12 12 N 1.34779 * 119.99669 * 151.92128 * 10 8 3 13 13 C 1.46503 * 119.99689 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.46740 * 179.97438 * 13 12 10 15 15 O 1.42895 * 112.94920 * 55.33282 * 14 13 12 16 16 C 1.53947 * 113.74146 * 283.73635 * 14 13 12 17 17 N 1.47806 * 86.03894 * 222.08639 * 16 14 13 18 18 C 1.36938 * 134.45905 * 204.63990 * 17 16 14 19 19 H 1.08002 * 120.00292 * 179.86871 * 18 17 16 20 20 C 1.38813 * 119.99822 * 359.87772 * 18 17 16 21 21 N 1.31623 * 120.00169 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99883 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47068 * 89.99701 * 22 20 18 24 24 H 1.48504 * 109.46803 * 209.99372 * 22 20 18 25 25 H 1.48501 * 109.47237 * 329.99344 * 22 20 18 26 26 C 1.47585 * 91.04941 * 24.55284 * 17 16 14 27 27 H 1.09000 * 109.46930 * 60.00219 * 1 2 3 28 28 H 1.09003 * 109.46907 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47171 * 300.00275 * 1 2 3 30 30 H 1.08999 * 109.47171 * 239.99724 * 2 1 3 31 31 H 1.09000 * 109.46930 * 119.99781 * 2 1 3 32 32 H 1.09003 * 109.50639 * 57.67523 * 4 3 2 33 33 H 1.08995 * 109.50884 * 297.58543 * 4 3 2 34 34 H 1.09003 * 109.50056 * 176.76047 * 5 4 3 35 35 H 1.08997 * 109.51321 * 296.85037 * 5 4 3 36 36 H 1.09001 * 109.50348 * 178.60933 * 7 6 5 37 37 H 1.09001 * 109.50799 * 298.69540 * 7 6 5 38 38 H 0.96995 * 119.99873 * 359.97438 * 12 10 8 39 39 H 1.08997 * 109.46812 * 299.99404 * 13 12 10 40 40 H 1.08994 * 109.47030 * 59.99767 * 13 12 10 41 41 H 0.96708 * 113.99583 * 309.66616 * 15 14 13 42 42 H 1.09003 * 113.76706 * 336.35854 * 16 14 13 43 43 H 1.09004 * 113.76878 * 107.74675 * 16 14 13 44 44 H 0.96996 * 120.00356 * 180.02562 * 21 20 18 45 45 H 1.09000 * 113.76641 * 221.14917 * 26 17 16 46 46 H 1.08997 * 113.77133 * 89.75161 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.6441 2.0766 1.2418 5 6 2.2230 3.4938 1.2264 6 8 1.7570 4.1810 0.0619 7 6 2.1066 3.5358 -1.1657 8 6 1.5266 2.1190 -1.1745 9 1 0.4385 2.1710 -1.1401 10 6 1.9578 1.4066 -2.4306 11 8 2.9713 0.7405 -2.4325 12 7 1.2171 1.5098 -3.5519 13 6 1.6359 0.8168 -4.7728 14 6 0.6279 1.0966 -5.8893 15 8 0.4307 2.4921 -6.1251 16 6 -0.6823 0.2994 -5.7555 17 7 -0.5826 0.0878 -7.2150 18 6 -1.4855 -0.1786 -8.2094 19 1 -1.1483 -0.2906 -9.2293 20 6 -2.8344 -0.3045 -7.9066 21 7 -3.2454 -0.1683 -6.6636 22 14 -4.0662 -0.6672 -9.2632 23 1 -4.2176 -2.1367 -9.4144 24 1 -5.3790 -0.0678 -8.9129 25 1 -3.5814 -0.0854 -10.5406 26 6 0.8799 0.2810 -7.1704 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.0418 1.5304 2.0972 33 1 0.5579 2.1279 1.3157 34 1 1.8988 4.0291 2.1189 35 1 3.3116 3.4423 1.2082 36 1 1.6983 4.1015 -2.0032 37 1 3.1918 3.4861 -1.2546 38 1 0.4064 2.0423 -3.5502 39 1 2.6206 1.1743 -5.0738 40 1 1.6806 -0.2558 -4.5845 41 1 0.2429 3.0033 -5.3259 42 1 -0.5823 -0.6152 -5.1710 43 1 -1.5370 0.9059 -5.4557 44 1 -4.1879 -0.2567 -6.4520 45 1 1.2702 0.8729 -7.9983 46 1 1.4397 -0.6390 -7.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672093909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:47 Heat of formation + Delta-G solvation = -81.092997 kcal Electronic energy + Delta-G solvation = -27569.169413 eV Core-core repulsion = 23688.340025 eV Total energy + Delta-G solvation = -3880.829388 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.77127 -40.65454 -39.48783 -37.24587 -36.46392 -35.29692 -34.02511 -32.68199 -31.75229 -30.21373 -28.14461 -27.37059 -26.75182 -25.62828 -23.79138 -23.70107 -22.13000 -21.09796 -20.69070 -19.00830 -18.54137 -17.73465 -17.66352 -17.39655 -17.08983 -16.48506 -16.30381 -15.98007 -15.88698 -15.66320 -15.54687 -15.10292 -14.88052 -14.86492 -14.52577 -14.39260 -13.95769 -13.84796 -13.48383 -13.26591 -12.96971 -12.87674 -12.83227 -12.76212 -12.66194 -12.55657 -12.23345 -11.79582 -11.71121 -11.62954 -11.42856 -11.04108 -10.97592 -10.72820 -10.60697 -10.18082 -9.38706 -8.94447 -7.92371 -5.24714 1.44770 1.46437 1.46896 1.55073 1.90410 2.45512 2.67129 2.93211 3.05087 3.27113 3.33648 3.54101 3.71039 3.71481 3.86284 3.88750 3.94269 4.09074 4.21180 4.29928 4.32264 4.36158 4.44609 4.60794 4.66467 4.68482 4.73907 4.77528 4.78650 4.90998 4.94395 4.95104 4.97708 5.15627 5.20701 5.27221 5.32049 5.48198 5.75466 5.90855 5.92495 6.05528 6.41299 6.83080 6.90398 7.13619 7.58158 8.51342 9.24272 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.021355 B = 0.003093 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.856729 B = 9050.486282 C = 9394.852887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.047 3.953 3 N -0.527 5.527 4 C 0.016 3.984 5 C 0.056 3.944 6 O -0.389 6.389 7 C 0.079 3.921 8 C 0.034 3.966 9 H 0.083 0.917 10 C 0.525 3.475 11 O -0.554 6.554 12 N -0.715 5.715 13 C 0.121 3.879 14 C 0.100 3.900 15 O -0.540 6.540 16 C 0.144 3.856 17 N -0.636 5.636 18 C -0.234 4.234 19 H 0.081 0.919 20 C -0.065 4.065 21 N -0.951 5.951 22 Si 0.978 3.022 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.270 1.270 26 C 0.129 3.871 27 H 0.046 0.954 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.052 0.948 34 H 0.125 0.875 35 H 0.060 0.940 36 H 0.121 0.879 37 H 0.058 0.942 38 H 0.409 0.591 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.383 0.617 42 H 0.025 0.975 43 H 0.050 0.950 44 H 0.248 0.752 45 H 0.058 0.942 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.171 6.977 18.118 21.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.081 4.081 3 N -0.252 5.252 4 C -0.111 4.111 5 C -0.020 4.020 6 O -0.307 6.307 7 C 0.001 3.999 8 C -0.079 4.079 9 H 0.101 0.899 10 C 0.311 3.689 11 O -0.431 6.431 12 N -0.369 5.369 13 C -0.005 4.005 14 C 0.057 3.943 15 O -0.346 6.346 16 C 0.018 3.982 17 N -0.362 5.362 18 C -0.363 4.363 19 H 0.099 0.901 20 C -0.258 4.258 21 N -0.600 5.600 22 Si 0.807 3.193 23 H -0.213 1.213 24 H -0.219 1.219 25 H -0.195 1.195 26 C 0.004 3.996 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.125 0.875 33 H 0.070 0.930 34 H 0.142 0.858 35 H 0.079 0.921 36 H 0.139 0.861 37 H 0.077 0.923 38 H 0.245 0.755 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.233 0.767 42 H 0.043 0.957 43 H 0.068 0.932 44 H 0.057 0.943 45 H 0.076 0.924 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.133 6.432 17.322 21.573 hybrid contribution -2.155 -0.558 -0.256 2.241 sum 8.978 5.874 17.066 20.158 Atomic orbital electron populations 1.22403 0.97195 1.03123 1.02038 1.22228 0.93371 0.89106 1.03359 1.62233 1.59394 1.02357 1.01247 1.22961 0.99917 0.95947 0.92305 1.22930 0.99128 0.91307 0.88670 1.88015 1.78707 1.49599 1.14389 1.22572 0.99885 0.89102 0.88332 1.22314 1.00166 0.95821 0.89566 0.89922 1.20480 0.83149 0.80801 0.84471 1.90695 1.26238 1.41480 1.84729 1.45885 1.28358 1.52121 1.10535 1.21722 0.98005 0.97811 0.82923 1.23116 0.94097 0.82480 0.94623 1.86577 1.93429 1.17463 1.37135 1.22864 0.94981 0.95337 0.84978 1.46089 1.02176 1.83724 1.04225 1.19381 0.87788 1.40593 0.88514 0.90076 1.25579 0.98473 1.02885 0.98880 1.69967 1.14402 1.57309 1.18318 0.85081 0.78139 0.77533 0.78584 1.21321 1.21874 1.19519 1.22793 0.86056 0.95985 0.94800 0.93535 0.91502 0.91021 0.92175 0.88912 0.87476 0.92983 0.85759 0.92135 0.86120 0.92343 0.75454 0.89983 0.91009 0.76747 0.95713 0.93204 0.94270 0.92395 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.48 9.21 71.98 0.66 -2.82 16 2 C 0.05 0.96 5.65 86.30 0.49 1.45 16 3 N -0.53 -10.58 4.48 -874.37 -3.92 -14.50 16 4 C 0.02 0.23 5.30 86.31 0.46 0.69 16 5 C 0.06 0.77 7.01 72.01 0.50 1.27 16 6 O -0.39 -7.13 10.83 -148.98 -1.61 -8.74 16 7 C 0.08 1.42 6.27 72.01 0.45 1.88 16 8 C 0.03 0.68 1.88 44.18 0.08 0.76 16 9 H 0.08 1.54 6.42 -2.39 -0.02 1.53 16 10 C 0.53 13.22 6.01 87.66 0.53 13.74 16 11 O -0.55 -18.12 15.39 -3.04 -0.05 -18.16 16 12 N -0.72 -16.74 5.33 -463.05 -2.47 -19.21 16 13 C 0.12 3.37 5.26 86.38 0.45 3.83 16 14 C 0.10 3.45 1.49 -10.13 -0.02 3.44 16 15 O -0.54 -18.27 13.50 -148.98 -2.01 -20.29 16 16 C 0.14 6.51 6.92 86.44 0.60 7.11 16 17 N -0.64 -32.62 3.70 -719.57 -2.67 -35.28 16 18 C -0.23 -13.33 10.70 84.03 0.90 -12.43 16 19 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 20 C -0.07 -3.72 5.50 84.86 0.47 -3.26 16 21 N -0.95 -56.65 11.39 21.65 0.25 -56.40 16 22 Si 0.98 45.93 29.55 68.60 2.03 47.96 16 23 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 24 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 26 C 0.13 5.15 8.34 86.49 0.72 5.87 16 27 H 0.05 0.96 6.44 -2.39 -0.02 0.94 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.10 6.57 -2.39 -0.02 1.09 16 30 H 0.06 1.59 6.26 -2.39 -0.01 1.57 16 31 H 0.09 1.60 8.13 -2.39 -0.02 1.58 16 32 H 0.11 1.17 8.13 -2.39 -0.02 1.15 16 33 H 0.05 0.73 6.55 -2.39 -0.02 0.71 16 34 H 0.12 1.07 8.14 -2.39 -0.02 1.06 16 35 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.41 7.98 7.42 -92.71 -0.69 7.29 16 39 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.07 2.17 8.09 -2.39 -0.02 2.15 16 41 H 0.38 9.19 7.73 -74.05 -0.57 8.62 16 42 H 0.03 1.16 8.06 -2.39 -0.02 1.14 16 43 H 0.05 2.52 7.17 -2.38 -0.02 2.50 16 44 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 45 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.07 2.55 8.10 -2.39 -0.02 2.53 16 Total: -1.00 -74.38 363.24 -4.41 -78.78 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -0.26 Total: 24.33 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: 6.30 Total: 21.51 kcal Atomic # 7 Polarization: -116.59 SS G_CDS: -8.81 Total: -125.39 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -3.67 Total: -47.19 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -74.38 -4.41 -78.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672093909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.308 kcal (2) G-P(sol) polarization free energy of solvation -74.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds