Wall clock time and date at job start Fri Apr 10 2020 18:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47050 * 2 1 4 4 C 1.52999 * 109.47236 * 119.99988 * 2 1 3 5 5 C 1.50707 * 109.47056 * 295.00153 * 4 2 1 6 6 N 1.34769 * 119.99900 * 180.02562 * 5 4 2 7 7 O 1.21279 * 120.00037 * 359.97438 * 5 4 2 8 8 C 1.50698 * 109.47189 * 239.99903 * 2 1 3 9 9 O 1.21277 * 120.00385 * 240.00045 * 8 2 1 10 10 N 1.34784 * 119.99650 * 59.99668 * 8 2 1 11 11 C 1.46503 * 119.99508 * 184.89941 * 10 8 2 12 12 C 1.53004 * 109.49771 * 298.02457 * 11 10 8 13 13 O 1.42906 * 109.47249 * 305.29327 * 12 11 10 14 14 C 1.53036 * 109.50048 * 58.09089 * 11 10 8 15 15 C 1.53038 * 109.53700 * 58.61811 * 14 11 10 16 16 C 1.53197 * 109.33990 * 61.34988 * 15 14 11 17 17 N 1.46939 * 108.76693 * 305.41296 * 16 15 14 18 18 C 1.36940 * 120.60254 * 233.53194 * 17 16 15 19 19 H 1.07993 * 119.99851 * 151.55090 * 18 17 16 20 20 C 1.38810 * 119.99982 * 331.54889 * 18 17 16 21 21 N 1.31616 * 120.00557 * 341.39466 * 20 18 17 22 22 Si 1.86804 * 119.99713 * 161.39401 * 20 18 17 23 23 H 1.48501 * 109.46998 * 94.98696 * 22 20 18 24 24 H 1.48501 * 109.46713 * 214.98134 * 22 20 18 25 25 H 1.48492 * 109.47436 * 334.98196 * 22 20 18 26 26 C 1.46924 * 118.76472 * 53.55905 * 17 16 15 27 27 H 1.09001 * 109.47430 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47194 * 299.99973 * 1 2 3 29 29 H 1.08998 * 109.47383 * 59.99828 * 1 2 3 30 30 H 1.08997 * 109.47147 * 54.99672 * 4 2 1 31 31 H 1.08999 * 109.46833 * 175.00280 * 4 2 1 32 32 H 0.97000 * 120.00082 * 359.97438 * 6 5 4 33 33 H 0.97001 * 120.00265 * 179.97438 * 6 5 4 34 34 H 0.96990 * 120.00301 * 4.89985 * 10 8 2 35 35 H 1.09003 * 109.47045 * 65.28877 * 12 11 10 36 36 H 1.08995 * 109.47174 * 185.29322 * 12 11 10 37 37 H 0.96700 * 113.99967 * 179.97438 * 13 12 11 38 38 H 1.08995 * 109.45960 * 298.59971 * 14 11 10 39 39 H 1.08999 * 109.45765 * 178.63560 * 14 11 10 40 40 H 1.08995 * 109.50055 * 181.31567 * 15 14 11 41 41 H 1.09006 * 109.49880 * 301.38049 * 15 14 11 42 42 H 1.08994 * 109.59009 * 65.16669 * 16 15 14 43 43 H 1.09001 * 109.58381 * 185.59751 * 16 15 14 44 44 H 0.96992 * 120.00597 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.58256 * 186.62148 * 26 17 16 46 46 H 1.09005 * 109.70362 * 66.26717 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 7 1.9853 -0.3913 3.7001 7 8 1.0117 1.0874 2.3633 8 6 2.0323 -0.7104 -1.2304 9 8 2.7296 -1.6965 -1.1192 10 7 1.7066 -0.2499 -2.4546 11 6 2.1041 -0.9997 -3.6488 12 6 3.6306 -1.0768 -3.7188 13 8 4.1774 0.2422 -3.6598 14 6 1.5239 -2.4142 -3.5806 15 6 -0.0011 -2.3373 -3.4774 16 6 -0.5597 -1.6452 -4.7248 17 7 0.1018 -0.3422 -4.8786 18 6 -0.6367 0.8044 -5.0018 19 1 -0.2314 1.7466 -4.6640 20 6 -1.9063 0.7555 -5.5609 21 7 -2.2631 -0.2774 -6.2946 22 14 -3.1086 2.1557 -5.2721 23 1 -3.0330 3.1144 -6.4036 24 1 -4.4872 1.6122 -5.1750 25 1 -2.7615 2.8534 -4.0081 26 6 1.5701 -0.2927 -4.8984 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6054 -1.7197 1.2952 31 1 3.1263 -0.7994 1.2055 32 1 2.4892 -1.2152 3.7907 33 1 1.7290 0.1098 4.4901 34 1 1.2092 0.5778 -2.5449 35 1 4.0037 -1.6626 -2.8787 36 1 3.9279 -1.5519 -4.6537 37 1 5.1432 0.2697 -3.6990 38 1 1.9215 -2.9280 -2.7054 39 1 1.7997 -2.9636 -4.4806 40 1 -0.4121 -3.3442 -3.4053 41 1 -0.2775 -1.7672 -2.5904 42 1 -0.3632 -2.2602 -5.6029 43 1 -1.6339 -1.4991 -4.6113 44 1 -3.1500 -0.3114 -6.6855 45 1 1.9006 0.7460 -4.9000 46 1 1.9428 -0.7961 -5.7906 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672490959.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:50 Heat of formation + Delta-G solvation = -113.245397 kcal Electronic energy + Delta-G solvation = -28450.957916 eV Core-core repulsion = 24568.734296 eV Total energy + Delta-G solvation = -3882.223621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.37379 -39.48351 -37.54800 -36.01852 -34.04280 -33.87400 -33.78645 -32.09439 -30.49492 -29.80902 -27.67637 -25.41774 -25.04758 -24.02564 -22.17784 -21.23369 -20.50484 -19.46343 -18.66380 -17.56301 -17.27773 -16.93820 -16.69985 -16.01356 -15.57508 -15.24431 -14.82524 -14.76950 -14.39947 -13.99949 -13.72444 -13.51878 -13.28949 -13.00866 -12.79335 -12.66619 -12.51376 -12.22388 -11.88758 -11.81124 -11.50096 -11.14462 -11.10135 -11.03960 -10.94397 -10.71593 -10.38281 -10.16261 -10.08451 -10.00905 -9.85596 -9.76387 -9.65839 -9.48278 -8.96677 -8.46520 -8.40304 -6.68858 -5.80935 -3.23500 2.52167 3.05924 3.26671 3.37368 3.45505 3.47822 3.79603 4.47834 4.53719 4.61433 4.93100 5.02837 5.15229 5.33627 5.38316 5.46154 5.59688 5.63734 5.69097 5.69763 5.73542 5.80409 5.97213 6.05821 6.10776 6.18901 6.30768 6.41525 6.45297 6.50272 6.62014 6.65755 6.72407 6.82240 6.89486 7.12103 7.15357 7.37821 7.63973 7.78527 7.88453 8.10900 8.13354 8.42137 8.70833 9.18847 9.81846 10.38908 11.27354 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.012499 B = 0.004890 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.646601 B = 5725.035791 C = 6988.976668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 H 0.100 0.900 4 C -0.121 4.121 5 C 0.517 3.483 6 N -0.860 5.860 7 O -0.538 6.538 8 C 0.522 3.478 9 O -0.561 6.561 10 N -0.684 5.684 11 C 0.166 3.834 12 C 0.067 3.933 13 O -0.565 6.565 14 C -0.119 4.119 15 C -0.137 4.137 16 C 0.171 3.829 17 N -0.587 5.587 18 C -0.257 4.257 19 H 0.066 0.934 20 C 0.007 3.993 21 N -0.898 5.898 22 Si 0.898 3.102 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.277 1.277 26 C 0.148 3.852 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.401 0.599 33 H 0.399 0.601 34 H 0.407 0.593 35 H 0.063 0.937 36 H 0.044 0.956 37 H 0.369 0.631 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.017 0.983 43 H 0.083 0.917 44 H 0.253 0.747 45 H 0.066 0.934 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.016 -4.029 14.317 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 H 0.118 0.882 4 C -0.161 4.161 5 C 0.302 3.698 6 N -0.424 5.424 7 O -0.415 6.415 8 C 0.308 3.692 9 O -0.442 6.442 10 N -0.332 5.332 11 C 0.078 3.922 12 C -0.012 4.012 13 O -0.369 6.369 14 C -0.157 4.157 15 C -0.176 4.176 16 C 0.046 3.954 17 N -0.310 5.310 18 C -0.386 4.386 19 H 0.083 0.917 20 C -0.192 4.192 21 N -0.542 5.542 22 Si 0.728 3.272 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.203 1.203 26 C 0.021 3.979 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.229 0.771 33 H 0.229 0.771 34 H 0.242 0.758 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.214 0.786 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.035 0.965 43 H 0.101 0.899 44 H 0.063 0.937 45 H 0.084 0.916 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 10.253 -3.941 14.012 17.804 hybrid contribution -0.137 0.569 0.309 0.662 sum 10.115 -3.372 14.322 17.855 Atomic orbital electron populations 1.21902 0.92185 1.02392 1.04220 1.20979 0.98431 1.00731 0.91486 0.88199 1.21429 1.03609 1.00019 0.91028 1.20804 0.78255 0.85395 0.85305 1.43908 1.60497 1.29624 1.08329 1.90733 1.39460 1.24602 1.86703 1.20367 0.79651 0.84396 0.84780 1.90555 1.39021 1.27516 1.87094 1.45741 1.56175 1.26915 1.04398 1.20961 0.90728 0.93111 0.87391 1.22669 0.94431 0.84117 1.00018 1.86517 1.24511 1.28404 1.97425 1.21728 0.97227 0.94909 1.01882 1.22107 0.94217 0.99514 1.01762 1.20776 0.98282 0.84917 0.91464 1.44049 0.98714 1.03988 1.84206 1.19128 0.97632 0.87538 1.34295 0.91667 1.25016 0.99789 0.97459 0.96912 1.70054 1.19819 1.31119 1.33207 0.86354 0.80868 0.81849 0.78155 1.21509 1.21626 1.20269 1.21086 0.86300 0.98762 0.91800 0.92784 0.90193 0.91282 0.88210 0.88141 0.77065 0.77081 0.75761 0.91907 0.93800 0.78577 0.91172 0.92152 0.93393 0.92582 0.96491 0.89851 0.93662 0.91574 0.95250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.84 37.16 0.33 -1.81 16 2 C -0.09 -1.29 2.37 -91.77 -0.22 -1.51 16 3 H 0.10 1.39 7.95 -51.93 -0.41 0.97 16 4 C -0.12 -1.33 4.52 -27.88 -0.13 -1.45 16 5 C 0.52 5.72 7.82 -10.99 -0.09 5.63 16 6 N -0.86 -5.90 8.87 31.22 0.28 -5.63 16 7 O -0.54 -8.08 14.80 5.56 0.08 -7.99 16 8 C 0.52 8.29 6.52 -10.98 -0.07 8.22 16 9 O -0.56 -9.64 12.23 5.56 0.07 -9.57 16 10 N -0.68 -11.64 3.80 -47.50 -0.18 -11.82 16 11 C 0.17 2.93 0.45 -131.70 -0.06 2.87 16 12 C 0.07 1.03 5.66 37.16 0.21 1.24 16 13 O -0.56 -8.37 13.08 -35.23 -0.46 -8.83 16 14 C -0.12 -2.11 4.44 -26.69 -0.12 -2.23 16 15 C -0.14 -2.64 5.93 -26.61 -0.16 -2.80 16 16 C 0.17 3.98 5.31 -3.70 -0.02 3.96 16 17 N -0.59 -13.99 2.90 -172.31 -0.50 -14.49 16 18 C -0.26 -6.74 9.57 -15.06 -0.14 -6.88 16 19 H 0.07 1.68 7.90 -52.49 -0.41 1.27 16 20 C 0.01 0.20 4.87 -17.43 -0.08 0.12 16 21 N -0.90 -25.57 11.33 55.49 0.63 -24.94 16 22 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.15 3.04 5.07 -3.71 -0.02 3.02 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.08 1.17 5.95 -51.93 -0.31 0.86 16 29 H 0.07 1.07 7.68 -51.93 -0.40 0.67 16 30 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.10 1.03 7.95 -51.93 -0.41 0.62 16 32 H 0.40 1.62 8.83 -40.82 -0.36 1.26 16 33 H 0.40 2.35 8.93 -40.82 -0.36 1.99 16 34 H 0.41 7.28 8.05 -40.82 -0.33 6.96 16 35 H 0.06 1.00 6.32 -51.93 -0.33 0.68 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.37 3.70 9.12 45.56 0.42 4.12 16 38 H 0.07 1.25 6.24 -51.93 -0.32 0.93 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 1.11 7.49 -51.93 -0.39 0.72 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 2.18 6.15 -51.93 -0.32 1.86 16 44 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.07 1.40 7.78 -51.93 -0.40 1.00 16 46 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 360.95 15.07 5.44 5.44 Total: -1.00 -32.64 360.95 -6.69 -39.33 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -6.45 Total: 13.80 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -0.57 Total: 8.39 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.22 Total: -56.88 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.31 Total: -26.40 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.64 -6.69 -39.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672490959.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.919 kcal (2) G-P(sol) polarization free energy of solvation -32.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds