Wall clock time and date at job start Fri Apr 10 2020 18:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.47339 * 2 1 4 4 C 1.42891 * 114.00418 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47409 * 180.02562 * 4 3 2 6 6 O 1.21273 * 119.99882 * 359.97438 * 5 4 3 7 7 N 1.34780 * 120.00012 * 180.02562 * 5 4 3 8 8 C 1.48148 * 127.83721 * 359.97438 * 7 5 4 9 9 C 1.54392 * 104.61546 * 140.42024 * 8 7 5 10 10 H 1.08998 * 110.42925 * 264.94266 * 9 8 7 11 11 C 1.53001 * 110.33954 * 142.73643 * 9 8 7 12 12 C 1.54286 * 104.95993 * 23.86659 * 9 8 7 13 13 H 1.08999 * 110.33758 * 241.02573 * 12 9 8 14 14 N 1.46897 * 110.34188 * 118.87065 * 12 9 8 15 15 C 1.46902 * 110.99990 * 164.26369 * 14 12 9 16 16 C 1.50694 * 109.47379 * 180.02562 * 15 14 12 17 17 O 1.21290 * 120.00190 * 359.72406 * 16 15 14 18 18 N 1.34776 * 119.99961 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99766 * 179.72257 * 18 16 15 20 20 H 1.07999 * 120.00394 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99941 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00265 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00015 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47289 * 89.99979 * 23 21 19 25 25 H 1.48500 * 109.47226 * 210.00386 * 23 21 19 26 26 H 1.48502 * 109.47114 * 330.00070 * 23 21 19 27 27 C 1.48309 * 127.76601 * 179.91049 * 7 5 4 28 28 H 1.08999 * 109.46919 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47251 * 300.00406 * 1 2 3 30 30 H 1.09005 * 109.46723 * 60.00016 * 1 2 3 31 31 H 1.09000 * 109.47336 * 240.00144 * 2 1 3 32 32 H 1.08996 * 109.47278 * 120.00129 * 2 1 3 33 33 H 1.09005 * 109.47376 * 60.00088 * 4 3 2 34 34 H 1.08999 * 109.47320 * 300.00040 * 4 3 2 35 35 H 1.08995 * 110.41089 * 21.63290 * 8 7 5 36 36 H 1.09007 * 110.50303 * 259.25362 * 8 7 5 37 37 H 1.09004 * 109.47205 * 298.16782 * 11 9 8 38 38 H 1.08995 * 109.47432 * 58.16897 * 11 9 8 39 39 H 1.09003 * 109.46785 * 178.17034 * 11 9 8 40 40 H 1.00898 * 111.00360 * 40.31497 * 14 12 9 41 41 H 1.09007 * 109.46958 * 60.00189 * 15 14 12 42 42 H 1.08993 * 109.47323 * 300.00520 * 15 14 12 43 43 H 0.96995 * 120.00284 * 359.72834 * 18 16 15 44 44 H 0.96996 * 120.00476 * 179.97438 * 22 21 19 45 45 H 1.08994 * 110.38550 * 100.79141 * 27 7 5 46 46 H 1.08995 * 110.51300 * 338.29874 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8194 2.9162 0.0012 6 8 2.9610 3.7729 0.0006 7 7 5.1210 3.2663 0.0013 8 6 6.3025 2.3726 0.0014 9 6 7.3079 3.0559 -0.9505 10 1 7.2235 2.6407 -1.9547 11 6 8.7352 2.8890 -0.4252 12 6 6.9071 4.5457 -0.9504 13 1 6.6258 4.8624 -1.9547 14 7 8.0121 5.3718 -0.4461 15 6 7.8057 6.7875 -0.7795 16 6 8.9569 7.6018 -0.2478 17 8 9.8580 7.0572 0.3544 18 7 8.9822 8.9361 -0.4362 19 6 10.0267 9.6777 0.0525 20 1 10.8294 9.1926 0.5880 21 6 10.0526 11.0534 -0.1412 22 7 11.0540 11.7641 0.3267 23 14 8.6638 11.8925 -1.0668 24 1 7.6040 12.2974 -0.1086 25 1 9.1882 13.0953 -1.7622 26 1 8.0953 10.9520 -2.0654 27 6 5.6935 4.6345 0.0000 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.8341 0.9765 -0.8892 34 1 3.8333 0.9768 0.8908 35 1 6.0328 1.3860 -0.3752 36 1 6.7218 2.2941 1.0045 37 1 8.8231 3.3725 0.5478 38 1 8.9640 1.8280 -0.3256 39 1 9.4352 3.3478 -1.1235 40 1 8.8989 5.0432 -0.7977 41 1 6.8759 7.1350 -0.3291 42 1 7.7499 6.9015 -1.8620 43 1 8.2615 9.3718 -0.9173 44 1 11.0722 12.7244 0.1912 45 1 6.0162 4.9119 1.0034 46 1 4.9661 5.3525 -0.3786 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673842568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:05 Heat of formation + Delta-G solvation = -96.635374 kcal Electronic energy + Delta-G solvation = -25982.586093 eV Core-core repulsion = 22101.082737 eV Total energy + Delta-G solvation = -3881.503356 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.43919 -38.95870 -38.24249 -37.54352 -34.86736 -33.88388 -32.42741 -31.94945 -31.64544 -29.71294 -27.80134 -26.51501 -26.05901 -23.98686 -23.20712 -22.88353 -19.92827 -19.49530 -19.35723 -18.38326 -17.62253 -16.91438 -16.90282 -16.27754 -15.97727 -15.63219 -15.53642 -15.15806 -14.73799 -14.38276 -14.09921 -13.96423 -13.51443 -13.29639 -13.25397 -12.93214 -12.79879 -12.62174 -12.45064 -12.28591 -12.06378 -12.02212 -11.82958 -11.80329 -11.64837 -11.25735 -11.19285 -10.96210 -10.86767 -10.59171 -10.12417 -9.98831 -9.97722 -9.57763 -8.99242 -8.61239 -8.24957 -8.17861 -6.31733 -3.83233 2.33266 2.36986 3.03004 3.08035 3.15910 3.45945 3.72420 4.03409 4.10458 4.14686 4.28634 4.47841 4.58322 4.60466 4.70630 4.79994 4.81256 4.83549 4.91869 5.10475 5.14237 5.17715 5.24306 5.25209 5.33469 5.49234 5.51422 5.57632 5.64938 5.68748 5.72781 5.74992 5.82426 5.89802 5.95835 6.00128 6.28394 6.65348 7.02768 7.27323 7.50014 7.57298 7.93082 8.13492 8.58714 8.94067 9.41747 9.81295 10.81241 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.022769 B = 0.002354 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.453877 B =11893.070633 C =12876.286393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.365 6.365 4 C 0.051 3.949 5 C 0.534 3.466 6 O -0.520 6.520 7 N -0.624 5.624 8 C 0.106 3.894 9 C -0.103 4.103 10 H 0.080 0.920 11 C -0.146 4.146 12 C 0.074 3.926 13 H 0.053 0.947 14 N -0.658 5.658 15 C 0.043 3.957 16 C 0.450 3.550 17 O -0.565 6.565 18 N -0.590 5.590 19 C -0.305 4.305 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.881 5.881 23 Si 0.879 3.121 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.115 3.885 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.358 0.642 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.371 0.629 44 H 0.273 0.727 45 H 0.089 0.911 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.130 -24.863 -4.573 29.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.284 6.284 4 C -0.029 4.029 5 C 0.322 3.678 6 O -0.394 6.394 7 N -0.361 5.361 8 C -0.017 4.017 9 C -0.123 4.123 10 H 0.099 0.901 11 C -0.204 4.204 12 C -0.037 4.037 13 H 0.071 0.929 14 N -0.294 5.294 15 C -0.089 4.089 16 C 0.236 3.764 17 O -0.447 6.447 18 N -0.229 5.229 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.007 4.007 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.182 0.818 41 H 0.106 0.894 42 H 0.064 0.936 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.107 0.893 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.390 -24.364 -3.506 29.030 hybrid contribution -0.569 0.647 -1.734 1.936 sum -15.959 -23.717 -5.239 29.063 Atomic orbital electron populations 1.21735 0.93297 1.02286 1.03560 1.22557 0.96077 0.83232 1.00211 1.88025 1.18424 1.26501 1.95424 1.22121 0.83937 0.94348 1.02489 1.19796 0.80682 0.90548 0.76783 1.90751 1.48220 1.51892 1.48562 1.48883 1.04290 1.09274 1.73644 1.22552 0.85060 0.93466 1.00616 1.22190 0.96132 0.94585 0.99393 0.90139 1.21756 0.93838 1.01473 1.03317 1.22398 0.92095 0.92884 0.96358 0.92888 1.60294 1.04812 1.00716 1.63621 1.21796 0.99293 0.89376 0.98482 1.19659 0.88575 0.82609 0.85571 1.90559 1.39137 1.70637 1.44400 1.42210 1.22708 1.06499 1.51486 1.19427 1.01229 0.89576 1.33174 0.86254 1.25041 0.97250 0.96108 0.97735 1.69618 1.30242 1.07181 1.45017 0.86675 0.82346 0.80150 0.80237 1.19543 1.20192 1.19533 1.22469 0.93819 0.83253 1.01193 0.90908 0.91612 0.91654 0.93167 0.93114 0.90347 0.90252 0.90542 0.89999 0.89953 0.92553 0.92042 0.81809 0.89407 0.93615 0.79664 0.91601 0.89278 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.16 0.38 -0.55 16 2 C 0.06 0.38 6.66 37.16 0.25 0.63 16 3 O -0.37 -3.99 9.88 -55.14 -0.54 -4.53 16 4 C 0.05 0.44 5.40 36.01 0.19 0.64 16 5 C 0.53 6.65 7.99 -10.98 -0.09 6.57 16 6 O -0.52 -8.96 16.77 -14.35 -0.24 -9.20 16 7 N -0.62 -6.68 3.32 -169.17 -0.56 -7.24 16 8 C 0.11 0.80 6.47 -2.41 -0.02 0.78 16 9 C -0.10 -0.86 3.66 -89.22 -0.33 -1.18 16 10 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 11 C -0.15 -1.25 7.81 37.16 0.29 -0.96 16 12 C 0.07 0.81 3.34 -66.31 -0.22 0.59 16 13 H 0.05 0.58 7.96 -51.93 -0.41 0.17 16 14 N -0.66 -9.22 4.95 -106.51 -0.53 -9.75 16 15 C 0.04 0.69 6.00 -4.98 -0.03 0.66 16 16 C 0.45 9.96 7.82 -10.99 -0.09 9.87 16 17 O -0.57 -14.69 15.78 5.55 0.09 -14.60 16 18 N -0.59 -13.92 5.09 -10.97 -0.06 -13.98 16 19 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 20 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 21 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 22 N -0.88 -25.68 13.96 55.50 0.77 -24.91 16 23 Si 0.88 19.46 27.74 -169.99 -4.71 14.74 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.27 -5.44 6.52 56.52 0.37 -5.08 16 27 C 0.12 1.39 6.37 -2.31 -0.01 1.37 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.48 7.95 -51.93 -0.41 0.06 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.37 7.30 -51.93 -0.38 -0.01 16 36 H 0.08 0.60 7.86 -51.92 -0.41 0.19 16 37 H 0.08 0.88 7.54 -51.93 -0.39 0.49 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.56 7.07 -51.93 -0.37 0.19 16 40 H 0.36 5.11 5.89 -39.29 -0.23 4.88 16 41 H 0.09 1.29 7.87 -51.92 -0.41 0.88 16 42 H 0.05 0.64 8.09 -51.93 -0.42 0.22 16 43 H 0.37 7.74 5.76 -40.82 -0.24 7.50 16 44 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.09 1.17 8.06 -51.93 -0.42 0.75 16 46 H 0.08 1.06 7.89 -51.93 -0.41 0.65 16 LS Contribution 375.73 15.07 5.66 5.66 Total: -1.00 -35.69 375.73 -7.47 -43.16 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -7.43 Total: 9.93 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: 0.08 Total: 10.71 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.37 Total: -55.87 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.70 Total: -28.33 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.71 Total: 14.74 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.69 -7.47 -43.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673842568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.476 kcal (2) G-P(sol) polarization free energy of solvation -35.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds