Wall clock time and date at job start Fri Apr 10 2020 18:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.47339 * 2 1 4 4 C 1.42891 * 114.00418 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47409 * 180.02562 * 4 3 2 6 6 O 1.21273 * 119.99882 * 359.97438 * 5 4 3 7 7 N 1.34780 * 120.00012 * 180.02562 * 5 4 3 8 8 C 1.48148 * 127.83721 * 359.97438 * 7 5 4 9 9 C 1.54392 * 104.61546 * 140.42024 * 8 7 5 10 10 H 1.08998 * 110.42925 * 264.94266 * 9 8 7 11 11 C 1.53001 * 110.33954 * 142.73643 * 9 8 7 12 12 C 1.54286 * 104.95993 * 23.86659 * 9 8 7 13 13 H 1.08999 * 110.33758 * 241.02573 * 12 9 8 14 14 N 1.46897 * 110.34188 * 118.87065 * 12 9 8 15 15 C 1.46902 * 110.99990 * 164.26369 * 14 12 9 16 16 C 1.50694 * 109.47379 * 180.02562 * 15 14 12 17 17 O 1.21290 * 120.00190 * 359.72406 * 16 15 14 18 18 N 1.34776 * 119.99961 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99766 * 179.72257 * 18 16 15 20 20 H 1.07999 * 120.00394 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99941 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00265 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00015 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47289 * 89.99979 * 23 21 19 25 25 H 1.48500 * 109.47226 * 210.00386 * 23 21 19 26 26 H 1.48502 * 109.47114 * 330.00070 * 23 21 19 27 27 C 1.48309 * 127.76601 * 179.91049 * 7 5 4 28 28 H 1.08999 * 109.46919 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47251 * 300.00406 * 1 2 3 30 30 H 1.09005 * 109.46723 * 60.00016 * 1 2 3 31 31 H 1.09000 * 109.47336 * 240.00144 * 2 1 3 32 32 H 1.08996 * 109.47278 * 120.00129 * 2 1 3 33 33 H 1.09005 * 109.47376 * 60.00088 * 4 3 2 34 34 H 1.08999 * 109.47320 * 300.00040 * 4 3 2 35 35 H 1.08995 * 110.41089 * 21.63290 * 8 7 5 36 36 H 1.09007 * 110.50303 * 259.25362 * 8 7 5 37 37 H 1.09004 * 109.47205 * 298.16782 * 11 9 8 38 38 H 1.08995 * 109.47432 * 58.16897 * 11 9 8 39 39 H 1.09003 * 109.46785 * 178.17034 * 11 9 8 40 40 H 1.00898 * 111.00360 * 40.31497 * 14 12 9 41 41 H 1.09007 * 109.46958 * 60.00189 * 15 14 12 42 42 H 1.08993 * 109.47323 * 300.00520 * 15 14 12 43 43 H 0.96995 * 120.00284 * 359.72834 * 18 16 15 44 44 H 0.96996 * 120.00476 * 179.97438 * 22 21 19 45 45 H 1.08994 * 110.38550 * 100.79141 * 27 7 5 46 46 H 1.08995 * 110.51300 * 338.29874 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8194 2.9162 0.0012 6 8 2.9610 3.7729 0.0006 7 7 5.1210 3.2663 0.0013 8 6 6.3025 2.3726 0.0014 9 6 7.3079 3.0559 -0.9505 10 1 7.2235 2.6407 -1.9547 11 6 8.7352 2.8890 -0.4252 12 6 6.9071 4.5457 -0.9504 13 1 6.6258 4.8624 -1.9547 14 7 8.0121 5.3718 -0.4461 15 6 7.8057 6.7875 -0.7795 16 6 8.9569 7.6018 -0.2478 17 8 9.8580 7.0572 0.3544 18 7 8.9822 8.9361 -0.4362 19 6 10.0267 9.6777 0.0525 20 1 10.8294 9.1926 0.5880 21 6 10.0526 11.0534 -0.1412 22 7 11.0540 11.7641 0.3267 23 14 8.6638 11.8925 -1.0668 24 1 7.6040 12.2974 -0.1086 25 1 9.1882 13.0953 -1.7622 26 1 8.0953 10.9520 -2.0654 27 6 5.6935 4.6345 0.0000 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.8341 0.9765 -0.8892 34 1 3.8333 0.9768 0.8908 35 1 6.0328 1.3860 -0.3752 36 1 6.7218 2.2941 1.0045 37 1 8.8231 3.3725 0.5478 38 1 8.9640 1.8280 -0.3256 39 1 9.4352 3.3478 -1.1235 40 1 8.8989 5.0432 -0.7977 41 1 6.8759 7.1350 -0.3291 42 1 7.7499 6.9015 -1.8620 43 1 8.2615 9.3718 -0.9173 44 1 11.0722 12.7244 0.1912 45 1 6.0162 4.9119 1.0034 46 1 4.9661 5.3525 -0.3786 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673842568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:04 Heat of formation + Delta-G solvation = -124.552911 kcal Electronic energy + Delta-G solvation = -25983.796688 eV Core-core repulsion = 22101.082737 eV Total energy + Delta-G solvation = -3882.713951 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.31240 -40.32521 -39.43654 -38.38764 -36.23368 -35.61472 -33.77322 -33.26873 -32.47047 -30.60827 -28.90003 -27.40403 -27.16711 -25.56756 -23.82780 -23.66768 -21.33096 -20.71155 -20.36365 -20.20572 -18.43859 -17.83143 -17.58582 -17.40761 -17.04015 -16.95848 -16.63215 -16.40222 -15.92529 -15.63180 -15.11799 -15.07678 -14.82155 -14.46367 -14.31545 -14.09982 -13.87936 -13.69605 -13.59993 -13.23128 -13.09776 -13.04785 -12.90192 -12.76517 -12.41761 -12.32537 -12.17262 -12.06670 -11.97171 -11.77198 -11.62611 -11.52144 -10.92317 -10.67144 -10.43194 -10.25104 -9.87308 -9.37687 -8.42006 -6.02410 1.29218 1.34564 1.42691 1.48870 1.57180 1.94567 2.21622 2.68508 2.89975 3.14419 3.38127 3.41606 3.58445 3.77394 3.96446 4.12987 4.13557 4.16378 4.26631 4.29248 4.34631 4.38250 4.42738 4.51582 4.52295 4.52920 4.67123 4.77285 4.80879 4.84843 4.92029 5.01694 5.03475 5.16954 5.24350 5.27501 5.51778 5.58045 5.89500 6.02010 6.11896 6.36978 6.49894 6.58805 6.87388 7.05233 7.39213 7.94874 8.75389 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.022769 B = 0.002354 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.453877 B =11893.070633 C =12876.286393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.050 3.950 3 O -0.406 6.406 4 C 0.055 3.945 5 C 0.526 3.474 6 O -0.581 6.581 7 N -0.620 5.620 8 C 0.105 3.895 9 C -0.096 4.096 10 H 0.104 0.896 11 C -0.142 4.142 12 C 0.078 3.922 13 H 0.063 0.937 14 N -0.670 5.670 15 C 0.057 3.943 16 C 0.451 3.549 17 O -0.609 6.609 18 N -0.592 5.592 19 C -0.327 4.327 20 H 0.058 0.942 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.962 3.038 24 H -0.260 1.260 25 H -0.274 1.274 26 H -0.233 1.233 27 C 0.113 3.887 28 H 0.097 0.903 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.357 0.643 41 H 0.105 0.895 42 H 0.077 0.923 43 H 0.388 0.612 44 H 0.279 0.721 45 H 0.072 0.928 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.196 -27.342 -6.672 32.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 O -0.325 6.325 4 C -0.024 4.024 5 C 0.316 3.684 6 O -0.461 6.461 7 N -0.355 5.355 8 C -0.016 4.016 9 C -0.115 4.115 10 H 0.122 0.878 11 C -0.200 4.200 12 C -0.033 4.033 13 H 0.080 0.920 14 N -0.306 5.306 15 C -0.076 4.076 16 C 0.239 3.761 17 O -0.494 6.494 18 N -0.234 5.234 19 C -0.456 4.456 20 H 0.076 0.924 21 C -0.213 4.213 22 N -0.573 5.573 23 Si 0.782 3.218 24 H -0.185 1.185 25 H -0.199 1.199 26 H -0.156 1.156 27 C -0.011 4.011 28 H 0.115 0.885 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.134 0.866 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.180 0.820 41 H 0.123 0.877 42 H 0.095 0.905 43 H 0.224 0.776 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.440 -26.902 -5.612 32.548 hybrid contribution 0.176 1.306 -0.982 1.643 sum -17.264 -25.596 -6.594 31.571 Atomic orbital electron populations 1.21792 0.93499 1.03485 1.02319 1.22785 0.96050 0.81811 1.01935 1.87984 1.19753 1.29005 1.95805 1.22250 0.83388 0.91465 1.05289 1.20656 0.80379 0.91949 0.75450 1.90716 1.49961 1.53833 1.51551 1.48944 1.04817 1.09238 1.72471 1.22790 0.83405 0.94494 1.00955 1.22216 0.95910 0.92483 1.00907 0.87767 1.21689 0.93977 1.02713 1.01579 1.22416 0.90469 0.94377 0.96048 0.91956 1.60251 1.05789 1.00062 1.64536 1.21692 0.96439 0.89496 0.99947 1.20879 0.89273 0.82367 0.83606 1.90538 1.41381 1.71516 1.45921 1.42058 1.22228 1.06967 1.52149 1.19015 1.01672 0.90580 1.34372 0.92368 1.26069 1.00553 0.96255 0.98382 1.69793 1.33035 1.07858 1.46655 0.85405 0.78030 0.79053 0.79304 1.18470 1.19921 1.15595 1.22348 0.93985 0.84236 1.00492 0.88468 0.92946 0.92820 0.91209 0.91430 0.86988 0.87463 0.86578 0.89720 0.92578 0.90062 0.92841 0.81973 0.87695 0.90546 0.77621 0.91161 0.90948 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.28 71.98 0.74 -0.95 16 2 C 0.05 0.55 6.66 71.98 0.48 1.03 16 3 O -0.41 -8.18 9.88 -129.94 -1.28 -9.47 16 4 C 0.06 0.78 5.40 71.24 0.38 1.17 16 5 C 0.53 12.35 7.99 87.66 0.70 13.05 16 6 O -0.58 -20.31 16.77 16.03 0.27 -20.04 16 7 N -0.62 -12.01 3.32 -807.52 -2.68 -14.69 16 8 C 0.11 1.19 6.47 86.54 0.56 1.75 16 9 C -0.10 -1.27 3.66 -9.88 -0.04 -1.30 16 10 H 0.10 0.98 8.14 -2.39 -0.02 0.97 16 11 C -0.14 -2.11 7.81 71.98 0.56 -1.54 16 12 C 0.08 1.54 3.34 45.83 0.15 1.69 16 13 H 0.06 1.17 7.96 -2.39 -0.02 1.15 16 14 N -0.67 -18.00 4.95 -490.89 -2.43 -20.43 16 15 C 0.06 1.71 6.00 85.55 0.51 2.22 16 16 C 0.45 20.06 7.82 87.66 0.69 20.74 16 17 O -0.61 -32.87 15.78 -3.06 -0.05 -32.92 16 18 N -0.59 -27.98 5.09 -306.99 -1.56 -29.55 16 19 C -0.33 -19.17 10.16 84.04 0.85 -18.32 16 20 H 0.06 4.04 7.39 -2.91 -0.02 4.02 16 21 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 22 N -0.93 -56.38 13.96 21.66 0.30 -56.08 16 23 Si 0.96 39.40 27.74 68.60 1.90 41.30 16 24 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 26 H -0.23 -8.06 6.52 99.48 0.65 -7.41 16 27 C 0.11 2.61 6.37 86.50 0.55 3.16 16 28 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.11 0.82 7.95 -2.38 -0.02 0.80 16 34 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.12 0.46 7.30 -2.39 -0.02 0.44 16 36 H 0.08 0.97 7.86 -2.38 -0.02 0.95 16 37 H 0.06 1.15 7.54 -2.38 -0.02 1.13 16 38 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.05 0.89 7.07 -2.39 -0.02 0.87 16 40 H 0.36 9.88 5.89 -89.70 -0.53 9.35 16 41 H 0.11 2.86 7.87 -2.38 -0.02 2.84 16 42 H 0.08 1.89 8.09 -2.39 -0.02 1.87 16 43 H 0.39 15.39 5.76 -92.71 -0.53 14.86 16 44 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 45 H 0.07 1.91 8.06 -2.39 -0.02 1.89 16 46 H 0.06 1.70 7.89 -2.39 -0.02 1.68 16 Total: -1.00 -85.80 375.73 0.95 -84.84 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: -0.13 Total: 34.62 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: 6.61 Total: 22.40 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -6.37 Total: -120.75 kcal Atomic # 8 Polarization: -61.36 SS G_CDS: -1.06 Total: -62.42 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 1.90 Total: 41.30 kcal Total: -85.80 0.95 -84.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673842568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.708 kcal (2) G-P(sol) polarization free energy of solvation -85.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds