Wall clock time and date at job start Fri Apr 10 2020 18:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 114.00262 * 2 1 4 4 C 1.50697 * 109.47007 * 179.97438 * 3 2 1 5 5 O 1.21283 * 120.00521 * 359.72812 * 4 3 2 6 6 N 1.34784 * 119.99774 * 179.97438 * 4 3 2 7 7 C 1.46499 * 119.99893 * 179.72962 * 6 4 3 8 8 C 1.53003 * 109.46708 * 180.02562 * 7 6 4 9 9 C 1.50708 * 109.46949 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99569 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99715 * 179.97438 * 9 8 7 12 12 C 1.47018 * 125.64280 * 179.71803 * 11 9 8 13 13 C 1.54334 * 107.26564 * 178.85139 * 12 11 9 14 14 H 1.09002 * 110.67290 * 96.52160 * 13 12 11 15 15 C 1.53001 * 110.85358 * 219.67327 * 13 12 11 16 16 C 1.55154 * 103.02041 * 338.13657 * 13 12 11 17 17 H 1.09000 * 111.04209 * 153.39451 * 16 13 12 18 18 N 1.46502 * 111.00798 * 277.23470 * 16 13 12 19 19 C 1.36927 * 120.00155 * 198.64462 * 18 16 13 20 20 H 1.08003 * 120.00270 * 0.02562 * 19 18 16 21 21 C 1.38820 * 120.00283 * 179.97438 * 19 18 16 22 22 N 1.31620 * 119.99294 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00359 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47098 * 90.00415 * 23 21 19 25 25 H 1.48501 * 109.47067 * 210.00351 * 23 21 19 26 26 H 1.48501 * 109.47456 * 330.00491 * 23 21 19 27 27 C 1.47418 * 125.65281 * 0.02562 * 11 9 8 28 28 H 1.08996 * 109.46799 * 60.00186 * 1 2 3 29 29 H 1.09000 * 109.47001 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47065 * 300.00389 * 1 2 3 31 31 H 1.09001 * 109.46781 * 60.00188 * 3 2 1 32 32 H 1.08993 * 109.47173 * 299.99979 * 3 2 1 33 33 H 0.97005 * 119.99846 * 359.72750 * 6 4 3 34 34 H 1.08998 * 109.47134 * 299.99552 * 7 6 4 35 35 H 1.08994 * 109.47397 * 59.99843 * 7 6 4 36 36 H 1.09000 * 109.47195 * 299.99415 * 8 7 6 37 37 H 1.08994 * 109.47584 * 59.99634 * 8 7 6 38 38 H 1.09004 * 109.88164 * 298.39202 * 12 11 9 39 39 H 1.08994 * 109.88904 * 59.56129 * 12 11 9 40 40 H 1.08993 * 109.47322 * 173.69003 * 15 13 12 41 41 H 1.08997 * 109.46856 * 293.69522 * 15 13 12 42 42 H 1.09004 * 109.47043 * 53.68518 * 15 13 12 43 43 H 0.97001 * 119.99533 * 18.65285 * 18 16 13 44 44 H 0.97007 * 119.99577 * 180.02562 * 22 21 19 45 45 H 1.09011 * 110.36519 * 322.93017 * 27 11 9 46 46 H 1.09002 * 110.36866 * 85.24700 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0342 0.0915 0.0060 6 7 4.2766 2.2968 0.0002 7 6 5.7369 2.1811 0.0068 8 6 6.3592 3.5788 0.0055 9 6 7.8616 3.4598 0.0129 10 8 8.3831 2.3649 0.0192 11 7 8.6255 4.5702 0.0126 12 6 10.0953 4.5989 0.0253 13 6 10.5248 6.0808 -0.0098 14 1 10.7340 6.4448 0.9961 15 6 11.7417 6.2739 -0.9169 16 6 9.2798 6.7917 -0.6030 17 1 9.2276 7.8294 -0.2735 18 7 9.2740 6.7072 -2.0656 19 6 8.5019 7.5688 -2.7981 20 1 7.8975 8.3109 -2.2977 21 6 8.4967 7.4891 -4.1840 22 7 9.2337 6.5850 -4.7938 23 14 7.4439 8.6648 -5.1832 24 1 8.2306 9.8828 -5.5042 25 1 7.0215 8.0021 -6.4432 26 1 6.2428 9.0444 -4.3968 27 6 8.1256 5.9570 0.0060 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 3.8594 3.1725 -0.0045 34 1 6.0548 1.6431 0.9000 35 1 6.0624 1.6372 -0.8799 36 1 6.0415 4.1172 -0.8874 37 1 6.0338 4.1223 0.8924 38 1 10.4675 4.1245 0.9333 39 1 10.4838 4.0814 -0.8518 40 1 11.9570 7.3378 -1.0146 41 1 12.6032 5.7672 -0.4819 42 1 11.5319 5.8538 -1.9007 43 1 9.8170 6.0409 -2.5150 44 1 9.2304 6.5296 -5.7623 45 1 7.2325 6.0354 -0.6141 46 1 7.9129 6.2885 1.0224 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673872230.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:07 Heat of formation + Delta-G solvation = -101.691041 kcal Electronic energy + Delta-G solvation = -26215.131780 eV Core-core repulsion = 22333.409194 eV Total energy + Delta-G solvation = -3881.722586 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.08933 -39.66508 -37.88201 -37.54876 -35.16767 -33.92618 -32.54269 -31.29546 -30.51865 -28.97053 -27.80876 -26.61003 -25.86730 -23.97966 -23.35329 -21.84017 -20.91217 -19.29982 -18.93181 -17.63432 -17.39737 -17.11995 -16.64805 -16.54632 -16.11034 -15.57577 -15.34837 -14.87637 -14.60540 -14.45233 -14.29268 -13.90243 -13.46315 -13.22494 -13.07977 -12.97325 -12.67139 -12.41049 -12.18142 -12.09275 -11.81685 -11.79966 -11.62846 -11.42166 -11.16777 -10.98858 -10.78836 -10.52169 -10.33923 -10.15135 -10.01194 -9.98003 -9.72679 -9.58777 -9.21407 -9.09715 -8.27096 -7.09691 -5.89069 -3.19363 2.46538 2.54376 2.90213 3.33768 3.34720 3.39079 3.42200 3.82081 4.45708 4.46935 4.69878 4.75227 4.79026 4.81356 4.96675 5.00795 5.03753 5.09927 5.12126 5.28277 5.31610 5.44068 5.49613 5.56431 5.71659 5.84747 5.88827 5.93520 5.96800 6.13205 6.16069 6.23152 6.29557 6.32577 6.44768 6.56783 6.62799 6.71243 6.87498 7.30005 7.57045 7.86848 8.06764 8.28534 8.44011 9.40355 9.96065 10.30546 11.32824 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.011688 B = 0.003060 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.002706 B = 9148.871752 C =10952.285830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.511 3.489 5 O -0.516 6.516 6 N -0.730 5.730 7 C 0.138 3.862 8 C -0.148 4.148 9 C 0.533 3.467 10 O -0.551 6.551 11 N -0.601 5.601 12 C 0.117 3.883 13 C -0.113 4.113 14 H 0.079 0.921 15 C -0.132 4.132 16 C 0.171 3.829 17 H 0.071 0.929 18 N -0.710 5.710 19 C -0.248 4.248 20 H 0.072 0.928 21 C -0.008 4.008 22 N -0.927 5.927 23 Si 0.907 3.093 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.067 3.933 28 H 0.044 0.956 29 H 0.091 0.909 30 H 0.043 0.957 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.401 0.599 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.044 0.956 42 H 0.069 0.931 43 H 0.387 0.613 44 H 0.257 0.743 45 H 0.080 0.920 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.453 -2.510 12.932 17.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.037 4.037 4 C 0.296 3.704 5 O -0.390 6.390 6 N -0.384 5.384 7 C 0.014 3.986 8 C -0.188 4.188 9 C 0.321 3.679 10 O -0.430 6.430 11 N -0.334 5.334 12 C -0.006 4.006 13 C -0.133 4.133 14 H 0.097 0.903 15 C -0.190 4.190 16 C 0.059 3.941 17 H 0.088 0.912 18 N -0.351 5.351 19 C -0.379 4.379 20 H 0.090 0.910 21 C -0.205 4.205 22 N -0.574 5.574 23 Si 0.738 3.262 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.059 4.059 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.235 0.765 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.223 0.777 44 H 0.067 0.933 45 H 0.099 0.901 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.828 -4.026 12.825 17.261 hybrid contribution -0.935 1.280 -0.824 1.787 sum -11.763 -2.746 12.001 17.028 Atomic orbital electron populations 1.22845 0.80345 1.03356 1.00142 1.88028 1.19800 1.25200 1.95426 1.22241 0.91628 0.87054 1.02728 1.20220 0.88622 0.84602 0.76956 1.90764 1.74569 1.26455 1.47250 1.45870 1.07362 1.08744 1.76440 1.21051 0.77465 0.95928 1.04142 1.21745 0.93268 0.98567 1.05230 1.19815 0.88466 0.83142 0.76501 1.90710 1.75048 1.26077 1.51186 1.48300 1.07035 1.06364 1.71683 1.21951 0.80138 0.97151 1.01360 1.22494 0.96963 0.94103 0.99734 0.90251 1.21605 0.95325 1.02127 0.99952 1.21356 0.90224 0.96156 0.86411 0.91155 1.42393 1.53658 1.40618 0.98398 1.19196 1.19579 1.10506 0.88654 0.91035 1.24767 1.00119 0.98988 0.96611 1.69663 1.43076 1.36109 1.08570 0.86210 0.79838 0.80285 0.79886 1.21649 1.21798 1.20749 1.23432 1.01481 0.81444 0.99532 0.93729 0.89075 0.93804 0.90172 0.90046 0.76522 0.90522 0.90286 0.87742 0.88566 0.92308 0.91419 0.92104 0.93646 0.91254 0.77687 0.93319 0.90136 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.37 -4.19 10.24 -55.14 -0.56 -4.75 16 3 C 0.04 0.38 6.42 36.00 0.23 0.61 16 4 C 0.51 6.49 7.91 -10.98 -0.09 6.40 16 5 O -0.52 -9.31 16.50 -14.35 -0.24 -9.55 16 6 N -0.73 -7.60 5.56 -60.30 -0.33 -7.93 16 7 C 0.14 1.82 4.96 -4.04 -0.02 1.80 16 8 C -0.15 -1.82 4.82 -27.88 -0.13 -1.95 16 9 C 0.53 8.92 7.85 -10.98 -0.09 8.83 16 10 O -0.55 -11.15 16.31 5.56 0.09 -11.06 16 11 N -0.60 -9.76 3.33 -170.51 -0.57 -10.33 16 12 C 0.12 1.86 6.47 -3.06 -0.02 1.84 16 13 C -0.11 -1.66 3.41 -88.78 -0.30 -1.96 16 14 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 15 C -0.13 -2.02 8.72 37.16 0.32 -1.69 16 16 C 0.17 2.92 3.44 -65.78 -0.23 2.69 16 17 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 18 N -0.71 -15.84 4.74 -51.35 -0.24 -16.09 16 19 C -0.25 -6.23 9.98 -15.06 -0.15 -6.38 16 20 H 0.07 1.71 7.83 -52.48 -0.41 1.30 16 21 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 22 N -0.93 -26.67 13.06 55.49 0.72 -25.94 16 23 Si 0.91 21.05 29.55 -169.99 -5.02 16.02 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 C 0.07 1.01 6.38 -2.53 -0.02 0.99 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.40 2.67 8.47 -40.82 -0.35 2.33 16 34 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 35 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 36 H 0.10 1.26 7.85 -51.93 -0.41 0.85 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 1.22 7.77 -51.93 -0.40 0.81 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 1.26 6.36 -51.93 -0.33 0.93 16 43 H 0.39 9.55 6.08 -40.82 -0.25 9.30 16 44 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.08 1.28 7.48 -51.92 -0.39 0.89 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 381.50 15.07 5.75 5.75 Total: -1.00 -35.12 381.50 -7.46 -42.58 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -7.58 Total: 9.10 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 0.53 Total: 12.20 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -0.42 Total: -60.29 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.71 Total: -25.36 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.12 -7.46 -42.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673872230.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.110 kcal (2) G-P(sol) polarization free energy of solvation -35.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds