Wall clock time and date at job start Fri Apr 10 2020 18:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 114.00262 * 2 1 4 4 C 1.50697 * 109.47007 * 179.97438 * 3 2 1 5 5 O 1.21283 * 120.00521 * 359.72812 * 4 3 2 6 6 N 1.34784 * 119.99774 * 179.97438 * 4 3 2 7 7 C 1.46499 * 119.99893 * 179.72962 * 6 4 3 8 8 C 1.53003 * 109.46708 * 180.02562 * 7 6 4 9 9 C 1.50708 * 109.46949 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99569 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99715 * 179.97438 * 9 8 7 12 12 C 1.47018 * 125.64280 * 179.71803 * 11 9 8 13 13 C 1.54334 * 107.26564 * 178.85139 * 12 11 9 14 14 H 1.09002 * 110.67290 * 96.52160 * 13 12 11 15 15 C 1.53001 * 110.85358 * 219.67327 * 13 12 11 16 16 C 1.55154 * 103.02041 * 338.13657 * 13 12 11 17 17 H 1.09000 * 111.04209 * 153.39451 * 16 13 12 18 18 N 1.46502 * 111.00798 * 277.23470 * 16 13 12 19 19 C 1.36927 * 120.00155 * 198.64462 * 18 16 13 20 20 H 1.08003 * 120.00270 * 0.02562 * 19 18 16 21 21 C 1.38820 * 120.00283 * 179.97438 * 19 18 16 22 22 N 1.31620 * 119.99294 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00359 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47098 * 90.00415 * 23 21 19 25 25 H 1.48501 * 109.47067 * 210.00351 * 23 21 19 26 26 H 1.48501 * 109.47456 * 330.00491 * 23 21 19 27 27 C 1.47418 * 125.65281 * 0.02562 * 11 9 8 28 28 H 1.08996 * 109.46799 * 60.00186 * 1 2 3 29 29 H 1.09000 * 109.47001 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47065 * 300.00389 * 1 2 3 31 31 H 1.09001 * 109.46781 * 60.00188 * 3 2 1 32 32 H 1.08993 * 109.47173 * 299.99979 * 3 2 1 33 33 H 0.97005 * 119.99846 * 359.72750 * 6 4 3 34 34 H 1.08998 * 109.47134 * 299.99552 * 7 6 4 35 35 H 1.08994 * 109.47397 * 59.99843 * 7 6 4 36 36 H 1.09000 * 109.47195 * 299.99415 * 8 7 6 37 37 H 1.08994 * 109.47584 * 59.99634 * 8 7 6 38 38 H 1.09004 * 109.88164 * 298.39202 * 12 11 9 39 39 H 1.08994 * 109.88904 * 59.56129 * 12 11 9 40 40 H 1.08993 * 109.47322 * 173.69003 * 15 13 12 41 41 H 1.08997 * 109.46856 * 293.69522 * 15 13 12 42 42 H 1.09004 * 109.47043 * 53.68518 * 15 13 12 43 43 H 0.97001 * 119.99533 * 18.65285 * 18 16 13 44 44 H 0.97007 * 119.99577 * 180.02562 * 22 21 19 45 45 H 1.09011 * 110.36519 * 322.93017 * 27 11 9 46 46 H 1.09002 * 110.36866 * 85.24700 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0342 0.0915 0.0060 6 7 4.2766 2.2968 0.0002 7 6 5.7369 2.1811 0.0068 8 6 6.3592 3.5788 0.0055 9 6 7.8616 3.4598 0.0129 10 8 8.3831 2.3649 0.0192 11 7 8.6255 4.5702 0.0126 12 6 10.0953 4.5989 0.0253 13 6 10.5248 6.0808 -0.0098 14 1 10.7340 6.4448 0.9961 15 6 11.7417 6.2739 -0.9169 16 6 9.2798 6.7917 -0.6030 17 1 9.2276 7.8294 -0.2735 18 7 9.2740 6.7072 -2.0656 19 6 8.5019 7.5688 -2.7981 20 1 7.8975 8.3109 -2.2977 21 6 8.4967 7.4891 -4.1840 22 7 9.2337 6.5850 -4.7938 23 14 7.4439 8.6648 -5.1832 24 1 8.2306 9.8828 -5.5042 25 1 7.0215 8.0021 -6.4432 26 1 6.2428 9.0444 -4.3968 27 6 8.1256 5.9570 0.0060 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 3.8594 3.1725 -0.0045 34 1 6.0548 1.6431 0.9000 35 1 6.0624 1.6372 -0.8799 36 1 6.0415 4.1172 -0.8874 37 1 6.0338 4.1223 0.8924 38 1 10.4675 4.1245 0.9333 39 1 10.4838 4.0814 -0.8518 40 1 11.9570 7.3378 -1.0146 41 1 12.6032 5.7672 -0.4819 42 1 11.5319 5.8538 -1.9007 43 1 9.8170 6.0409 -2.5150 44 1 9.2304 6.5296 -5.7623 45 1 7.2325 6.0354 -0.6141 46 1 7.9129 6.2885 1.0224 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673872230.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:07 Heat of formation + Delta-G solvation = -128.751546 kcal Electronic energy + Delta-G solvation = -26216.305211 eV Core-core repulsion = 22333.409194 eV Total energy + Delta-G solvation = -3882.896018 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.27563 -40.76376 -39.10751 -38.42608 -36.27983 -35.62646 -33.96659 -32.50020 -32.05056 -29.72912 -29.28277 -27.63398 -26.67109 -25.76872 -24.49373 -23.14003 -21.90153 -20.63437 -20.18169 -19.29605 -18.38463 -18.20998 -17.54832 -17.49622 -17.25824 -16.83018 -16.42973 -16.20266 -15.90049 -15.66582 -15.40925 -15.23459 -14.84855 -14.44669 -14.39747 -14.06219 -13.86117 -13.50725 -13.42338 -13.16228 -13.00279 -12.96496 -12.81722 -12.78880 -12.51346 -12.35059 -12.24888 -12.09782 -11.93962 -11.45533 -11.32967 -11.13196 -10.96887 -10.83265 -10.76193 -10.24286 -9.63548 -8.91764 -7.89049 -5.16854 1.50733 1.51595 1.52455 1.58694 1.60533 1.67090 2.21312 2.60276 3.12023 3.42689 3.48362 3.64043 3.78230 3.90405 3.93134 3.99597 4.01530 4.15040 4.20696 4.28948 4.43147 4.46147 4.51487 4.59000 4.66665 4.69054 4.77315 4.84957 4.85722 4.88164 4.89571 5.01130 5.03292 5.23194 5.26206 5.29132 5.43702 5.55336 5.62409 6.04223 6.31791 6.49588 6.60163 7.13441 7.18974 7.39184 8.15930 8.37372 9.34538 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.011688 B = 0.003060 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.002706 B = 9148.871752 C =10952.285830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.048 3.952 4 C 0.503 3.497 5 O -0.582 6.582 6 N -0.709 5.709 7 C 0.145 3.855 8 C -0.131 4.131 9 C 0.520 3.480 10 O -0.597 6.597 11 N -0.604 5.604 12 C 0.114 3.886 13 C -0.098 4.098 14 H 0.119 0.881 15 C -0.128 4.128 16 C 0.156 3.844 17 H 0.087 0.913 18 N -0.724 5.724 19 C -0.228 4.228 20 H 0.088 0.912 21 C -0.078 4.078 22 N -0.973 5.973 23 Si 0.967 3.033 24 H -0.293 1.293 25 H -0.308 1.308 26 H -0.261 1.261 27 C 0.076 3.924 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.423 0.577 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.112 0.888 37 H 0.139 0.861 38 H 0.073 0.927 39 H 0.034 0.966 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.030 0.970 43 H 0.372 0.628 44 H 0.246 0.754 45 H 0.074 0.926 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.705 0.120 15.457 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.031 4.031 4 C 0.291 3.709 5 O -0.461 6.461 6 N -0.365 5.365 7 C 0.021 3.979 8 C -0.170 4.170 9 C 0.310 3.690 10 O -0.479 6.479 11 N -0.336 5.336 12 C -0.009 4.009 13 C -0.118 4.118 14 H 0.137 0.863 15 C -0.186 4.186 16 C 0.046 3.954 17 H 0.105 0.895 18 N -0.363 5.363 19 C -0.360 4.360 20 H 0.106 0.894 21 C -0.270 4.270 22 N -0.624 5.624 23 Si 0.797 3.203 24 H -0.220 1.220 25 H -0.235 1.235 26 H -0.185 1.185 27 C -0.049 4.049 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.136 0.864 32 H 0.129 0.871 33 H 0.262 0.738 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.131 0.869 37 H 0.157 0.843 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.049 0.951 43 H 0.205 0.795 44 H 0.055 0.945 45 H 0.092 0.908 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.135 -1.291 15.422 20.299 hybrid contribution -0.184 0.472 -1.504 1.587 sum -13.318 -0.819 13.919 19.281 Atomic orbital electron populations 1.23036 0.78145 1.04118 1.01784 1.87971 1.22286 1.26949 1.95839 1.22383 0.88097 0.86798 1.05808 1.21142 0.90629 0.83843 0.75321 1.90735 1.76016 1.28952 1.50369 1.45648 1.05998 1.09651 1.75181 1.20734 0.79302 0.96239 1.01658 1.21674 0.89838 0.98051 1.07477 1.20619 0.90293 0.82534 0.75560 1.90691 1.76216 1.27804 1.53224 1.48453 1.07136 1.06955 1.71047 1.21980 0.80412 0.97998 1.00544 1.22484 0.95418 0.92638 1.01222 0.86252 1.21537 0.96777 1.01899 0.98366 1.21716 0.92356 0.97721 0.83568 0.89508 1.42605 1.53135 1.39787 1.00806 1.19668 1.17860 1.09639 0.88795 0.89407 1.25513 1.02306 1.01063 0.98128 1.69843 1.45927 1.38801 1.07859 0.85224 0.79001 0.78007 0.78019 1.22043 1.23529 1.18530 1.23394 0.99805 0.79945 1.01715 0.92258 0.88966 0.91855 0.86429 0.87110 0.73825 0.92202 0.93949 0.86938 0.84343 0.90879 0.94737 0.92238 0.91345 0.95094 0.79538 0.94531 0.90754 0.88054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -8.92 10.24 -129.94 -1.33 -10.25 16 3 C 0.05 0.73 6.42 71.24 0.46 1.19 16 4 C 0.50 12.45 7.91 87.65 0.69 13.14 16 5 O -0.58 -21.86 16.50 16.00 0.26 -21.59 16 6 N -0.71 -13.64 5.56 -463.06 -2.57 -16.21 16 7 C 0.15 3.86 4.96 86.38 0.43 4.28 16 8 C -0.13 -2.94 4.82 29.85 0.14 -2.80 16 9 C 0.52 17.07 7.85 87.66 0.69 17.75 16 10 O -0.60 -24.89 16.31 -3.03 -0.05 -24.94 16 11 N -0.60 -18.55 3.33 -811.77 -2.70 -21.25 16 12 C 0.11 3.50 6.47 86.73 0.56 4.06 16 13 C -0.10 -2.62 3.41 -9.60 -0.03 -2.66 16 14 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 15 C -0.13 -3.79 8.72 71.98 0.63 -3.16 16 16 C 0.16 4.89 3.44 46.38 0.16 5.05 16 17 H 0.09 2.49 8.13 -2.39 -0.02 2.47 16 18 N -0.72 -31.83 4.74 -316.36 -1.50 -33.33 16 19 C -0.23 -11.14 9.98 84.04 0.84 -10.30 16 20 H 0.09 3.94 7.83 -2.91 -0.02 3.92 16 21 C -0.08 -4.19 5.50 84.86 0.47 -3.73 16 22 N -0.97 -57.81 13.06 21.65 0.28 -57.53 16 23 Si 0.97 43.30 29.55 68.60 2.03 45.33 16 24 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 25 H -0.31 -14.45 7.11 99.48 0.71 -13.74 16 26 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 27 C 0.08 1.99 6.38 86.86 0.55 2.55 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.42 4.19 8.47 -92.70 -0.79 3.40 16 34 H 0.06 1.80 8.10 -2.39 -0.02 1.78 16 35 H 0.04 1.43 8.10 -2.39 -0.02 1.41 16 36 H 0.11 2.43 7.85 -2.39 -0.02 2.41 16 37 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.03 1.28 7.77 -2.39 -0.02 1.26 16 40 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.03 1.15 6.36 -2.38 -0.02 1.13 16 43 H 0.37 18.77 6.08 -92.71 -0.56 18.21 16 44 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 45 H 0.07 2.08 7.48 -2.38 -0.02 2.06 16 46 H 0.10 1.84 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -82.79 381.50 0.89 -81.90 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: -0.36 Total: 30.96 kcal Atomic # 6 Polarization: 20.08 SS G_CDS: 6.83 Total: 26.91 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -6.49 Total: -128.31 kcal Atomic # 8 Polarization: -55.67 SS G_CDS: -1.12 Total: -56.78 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -82.79 0.89 -81.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673872230.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.854 kcal (2) G-P(sol) polarization free energy of solvation -82.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds