Wall clock time and date at job start Fri Apr 10 2020 18:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99828 * 2 1 4 4 C 1.50706 * 109.46702 * 179.97438 * 3 2 1 5 5 O 1.21279 * 120.00072 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99762 * 179.97438 * 4 3 2 7 7 C 1.46496 * 120.00258 * 179.97438 * 6 4 3 8 8 C 1.52993 * 109.47551 * 180.02562 * 7 6 4 9 9 C 1.50696 * 109.47429 * 180.02562 * 8 7 6 10 10 O 1.21284 * 120.00109 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00141 * 180.02562 * 9 8 7 12 12 C 1.47428 * 125.64642 * 179.71841 * 11 9 8 13 13 C 1.55139 * 104.72077 * 155.81442 * 12 11 9 14 14 H 1.09003 * 111.22497 * 279.17933 * 13 12 11 15 15 C 1.52999 * 110.90579 * 155.27387 * 13 12 11 16 16 C 1.55156 * 101.48441 * 37.29525 * 13 12 11 17 17 H 1.09002 * 110.71863 * 205.96766 * 16 13 12 18 18 N 1.46492 * 110.87633 * 82.76685 * 16 13 12 19 19 C 1.36935 * 120.00460 * 159.93619 * 18 16 13 20 20 H 1.08004 * 119.99892 * 359.97438 * 19 18 16 21 21 C 1.38816 * 120.00406 * 180.02562 * 19 18 16 22 22 N 1.31628 * 119.99609 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00295 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47207 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47165 * 119.99797 * 23 21 19 26 26 H 1.48495 * 109.47069 * 239.99765 * 23 21 19 27 27 C 1.47025 * 125.64998 * 0.02562 * 11 9 8 28 28 H 1.09002 * 109.47309 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47187 * 300.00778 * 1 2 3 30 30 H 1.09002 * 109.47018 * 59.99971 * 1 2 3 31 31 H 1.09000 * 109.46890 * 59.99811 * 3 2 1 32 32 H 1.09000 * 109.47141 * 299.99454 * 3 2 1 33 33 H 0.96999 * 120.00047 * 0.02562 * 6 4 3 34 34 H 1.09000 * 109.47024 * 300.00478 * 7 6 4 35 35 H 1.09004 * 109.46875 * 60.00324 * 7 6 4 36 36 H 1.09000 * 109.47250 * 300.00222 * 8 7 6 37 37 H 1.09004 * 109.46862 * 60.00198 * 8 7 6 38 38 H 1.08992 * 110.36529 * 274.74168 * 12 11 9 39 39 H 1.09000 * 110.37081 * 37.06982 * 12 11 9 40 40 H 1.08998 * 109.46923 * 307.97471 * 15 13 12 41 41 H 1.09001 * 109.47240 * 67.97275 * 15 13 12 42 42 H 1.08994 * 109.46996 * 187.97563 * 15 13 12 43 43 H 0.97003 * 119.99902 * 339.93322 * 18 16 13 44 44 H 0.96993 * 119.99562 * 180.02562 * 22 21 19 45 45 H 1.09005 * 109.87955 * 300.44166 * 27 11 9 46 46 H 1.08996 * 109.88146 * 61.60663 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0915 0.0015 6 7 4.2765 2.2968 0.0002 7 6 5.7369 2.1812 0.0014 8 6 6.3592 3.5788 0.0013 9 6 7.8614 3.4599 0.0019 10 8 8.3831 2.3650 0.0019 11 7 8.6254 4.5702 0.0024 12 6 10.0994 4.5990 0.0089 13 6 10.4696 5.9736 -0.6078 14 1 10.4184 5.9444 -1.6962 15 6 11.8533 6.4276 -0.1386 16 6 9.3576 6.8840 -0.0230 17 1 9.1795 7.7410 -0.6726 18 7 9.7024 7.3252 1.3307 19 6 9.0959 8.4300 1.8662 20 1 8.3636 8.9764 1.2903 21 6 9.4229 8.8483 3.1488 22 7 10.3158 8.1826 3.8504 23 14 8.5961 10.3558 3.8789 24 1 7.6377 10.9202 2.8948 25 1 7.8673 9.9711 5.1142 26 1 9.6254 11.3742 4.2083 27 6 8.1269 5.9534 0.0030 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8593 3.1725 -0.0001 34 1 6.0578 1.6410 0.8921 35 1 6.0592 1.6395 -0.8879 36 1 6.0383 4.1194 -0.8892 37 1 6.0369 4.1201 0.8908 38 1 10.4757 4.5246 1.0291 39 1 10.4974 3.7896 -0.6032 40 1 11.9009 6.3825 0.9494 41 1 12.6139 5.7723 -0.5630 42 1 12.0307 7.4513 -0.4679 43 1 10.3603 6.8346 1.8479 44 1 10.5440 8.4747 4.7467 45 1 7.5126 6.1264 -0.8807 46 1 7.5426 6.1364 0.9047 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673872232.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:12 Heat of formation + Delta-G solvation = -101.758886 kcal Electronic energy + Delta-G solvation = -25944.571784 eV Core-core repulsion = 22062.846255 eV Total energy + Delta-G solvation = -3881.725528 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.15872 -39.72159 -37.93402 -37.60648 -35.24972 -34.00415 -32.55080 -31.36672 -30.52373 -29.03375 -27.78442 -26.65670 -25.90960 -23.99370 -23.37506 -21.94206 -20.98970 -19.35547 -18.90519 -17.69920 -17.46999 -17.18157 -16.71202 -16.61344 -16.11096 -15.59947 -15.40061 -14.86067 -14.68259 -14.60377 -14.26356 -13.92684 -13.59957 -13.28145 -13.10984 -12.98711 -12.74358 -12.47398 -12.19359 -12.00472 -11.96474 -11.85594 -11.64012 -11.51516 -11.17575 -11.00184 -10.83387 -10.52915 -10.29580 -10.20605 -10.07845 -9.96954 -9.75914 -9.65687 -9.29604 -9.08536 -8.31675 -7.13711 -5.90671 -3.21076 2.39371 2.47177 2.80346 3.27427 3.33777 3.39215 3.42294 3.75783 4.38765 4.46147 4.63134 4.69233 4.71552 4.74798 4.91830 4.92915 4.96932 5.06441 5.11646 5.27279 5.29734 5.33947 5.45635 5.57713 5.71346 5.76382 5.86334 5.88417 5.91174 6.12691 6.15043 6.20471 6.29119 6.30473 6.46715 6.55940 6.57137 6.68617 6.87526 7.22224 7.57094 7.81034 7.99382 8.27025 8.34823 9.39099 9.93935 10.28457 11.31378 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.013901 B = 0.002613 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.778676 B =10714.874457 C =12252.979168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.511 3.489 5 O -0.516 6.516 6 N -0.730 5.730 7 C 0.137 3.863 8 C -0.148 4.148 9 C 0.530 3.470 10 O -0.551 6.551 11 N -0.606 5.606 12 C 0.114 3.886 13 C -0.114 4.114 14 H 0.079 0.921 15 C -0.131 4.131 16 C 0.171 3.829 17 H 0.070 0.930 18 N -0.712 5.712 19 C -0.247 4.247 20 H 0.073 0.927 21 C -0.009 4.009 22 N -0.928 5.928 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.291 1.291 27 C 0.070 3.930 28 H 0.091 0.909 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.401 0.599 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.045 0.955 42 H 0.060 0.940 43 H 0.387 0.613 44 H 0.256 0.744 45 H 0.055 0.945 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.305 -6.943 -10.658 19.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.036 4.036 4 C 0.296 3.704 5 O -0.390 6.390 6 N -0.385 5.385 7 C 0.014 3.986 8 C -0.188 4.188 9 C 0.317 3.683 10 O -0.430 6.430 11 N -0.339 5.339 12 C -0.008 4.008 13 C -0.134 4.134 14 H 0.097 0.903 15 C -0.189 4.189 16 C 0.059 3.941 17 H 0.088 0.912 18 N -0.353 5.353 19 C -0.378 4.378 20 H 0.091 0.909 21 C -0.205 4.205 22 N -0.575 5.575 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.218 1.218 27 C -0.056 4.056 28 H 0.110 0.890 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.235 0.765 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.223 0.777 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.665 -8.407 -10.588 19.223 hybrid contribution -0.792 1.568 0.750 1.910 sum -14.457 -6.838 -9.838 18.777 Atomic orbital electron populations 1.22849 0.80291 1.03393 1.00160 1.88028 1.19845 1.25173 1.95428 1.22242 0.91586 0.87085 1.02736 1.20229 0.88642 0.84589 0.76938 1.90766 1.74568 1.26446 1.47180 1.45870 1.07333 1.08764 1.76528 1.21052 0.77504 0.95876 1.04193 1.21748 0.93293 0.98579 1.05218 1.19851 0.88482 0.83233 0.76687 1.90716 1.75023 1.26040 1.51248 1.48442 1.07459 1.06365 1.71590 1.22321 0.79684 0.97593 1.01186 1.22654 0.96797 0.94455 0.99456 0.90282 1.21547 0.93958 1.00789 1.02634 1.21197 0.90211 0.93533 0.89137 0.91220 1.42462 1.49239 1.32251 1.11390 1.19253 1.18052 1.03184 0.97333 0.90948 1.24769 0.99341 0.99306 0.97128 1.69667 1.35187 1.41131 1.11527 0.86132 0.78579 0.82520 0.78966 1.20512 1.21872 1.21802 1.23314 1.00405 0.80945 1.00961 0.89045 0.93728 0.93770 0.90069 0.90140 0.76514 0.90343 0.90428 0.88391 0.88017 0.91154 0.91223 0.91204 0.93618 0.92086 0.77718 0.93372 0.92685 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.37 -3.93 10.24 -55.14 -0.56 -4.50 16 3 C 0.04 0.35 6.42 36.01 0.23 0.58 16 4 C 0.51 6.00 7.91 -10.98 -0.09 5.91 16 5 O -0.52 -8.83 16.50 -14.35 -0.24 -9.07 16 6 N -0.73 -6.80 5.56 -60.30 -0.33 -7.13 16 7 C 0.14 1.65 4.96 -4.05 -0.02 1.63 16 8 C -0.15 -1.63 5.01 -27.89 -0.14 -1.77 16 9 C 0.53 8.28 7.85 -10.99 -0.09 8.19 16 10 O -0.55 -10.53 16.24 5.55 0.09 -10.44 16 11 N -0.61 -9.50 3.32 -170.37 -0.57 -10.07 16 12 C 0.11 1.82 6.36 -2.40 -0.02 1.81 16 13 C -0.11 -1.68 3.53 -88.35 -0.31 -1.99 16 14 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 15 C -0.13 -1.98 8.85 37.16 0.33 -1.65 16 16 C 0.17 2.93 3.36 -66.10 -0.22 2.71 16 17 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 18 N -0.71 -15.75 4.62 -51.65 -0.24 -15.99 16 19 C -0.25 -6.18 9.98 -15.06 -0.15 -6.33 16 20 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 22 N -0.93 -26.40 13.06 55.49 0.72 -25.68 16 23 Si 0.91 20.98 29.55 -169.99 -5.02 15.95 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 C 0.07 1.06 6.23 -3.06 -0.02 1.04 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.40 2.23 8.47 -40.82 -0.35 1.88 16 34 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 35 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.24 7.99 -51.93 -0.41 0.83 16 39 H 0.07 1.08 8.03 -51.93 -0.42 0.66 16 40 H 0.07 1.23 6.39 -51.93 -0.33 0.90 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.39 9.32 6.11 -40.82 -0.25 9.07 16 44 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.08 1.32 8.04 -51.93 -0.42 0.90 16 LS Contribution 382.41 15.07 5.76 5.76 Total: -1.00 -34.66 382.41 -7.50 -42.15 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -7.64 Total: 7.91 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: 0.53 Total: 11.09 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.42 Total: -58.87 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.71 Total: -24.00 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.66 -7.50 -42.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673872232.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.605 kcal (2) G-P(sol) polarization free energy of solvation -34.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds