Wall clock time and date at job start Fri Apr 10 2020 18:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99828 * 2 1 4 4 C 1.50706 * 109.46702 * 179.97438 * 3 2 1 5 5 O 1.21279 * 120.00072 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99762 * 179.97438 * 4 3 2 7 7 C 1.46496 * 120.00258 * 179.97438 * 6 4 3 8 8 C 1.52993 * 109.47551 * 180.02562 * 7 6 4 9 9 C 1.50696 * 109.47429 * 180.02562 * 8 7 6 10 10 O 1.21284 * 120.00109 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00141 * 180.02562 * 9 8 7 12 12 C 1.47428 * 125.64642 * 179.71841 * 11 9 8 13 13 C 1.55139 * 104.72077 * 155.81442 * 12 11 9 14 14 H 1.09003 * 111.22497 * 279.17933 * 13 12 11 15 15 C 1.52999 * 110.90579 * 155.27387 * 13 12 11 16 16 C 1.55156 * 101.48441 * 37.29525 * 13 12 11 17 17 H 1.09002 * 110.71863 * 205.96766 * 16 13 12 18 18 N 1.46492 * 110.87633 * 82.76685 * 16 13 12 19 19 C 1.36935 * 120.00460 * 159.93619 * 18 16 13 20 20 H 1.08004 * 119.99892 * 359.97438 * 19 18 16 21 21 C 1.38816 * 120.00406 * 180.02562 * 19 18 16 22 22 N 1.31628 * 119.99609 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00295 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47207 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47165 * 119.99797 * 23 21 19 26 26 H 1.48495 * 109.47069 * 239.99765 * 23 21 19 27 27 C 1.47025 * 125.64998 * 0.02562 * 11 9 8 28 28 H 1.09002 * 109.47309 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47187 * 300.00778 * 1 2 3 30 30 H 1.09002 * 109.47018 * 59.99971 * 1 2 3 31 31 H 1.09000 * 109.46890 * 59.99811 * 3 2 1 32 32 H 1.09000 * 109.47141 * 299.99454 * 3 2 1 33 33 H 0.96999 * 120.00047 * 0.02562 * 6 4 3 34 34 H 1.09000 * 109.47024 * 300.00478 * 7 6 4 35 35 H 1.09004 * 109.46875 * 60.00324 * 7 6 4 36 36 H 1.09000 * 109.47250 * 300.00222 * 8 7 6 37 37 H 1.09004 * 109.46862 * 60.00198 * 8 7 6 38 38 H 1.08992 * 110.36529 * 274.74168 * 12 11 9 39 39 H 1.09000 * 110.37081 * 37.06982 * 12 11 9 40 40 H 1.08998 * 109.46923 * 307.97471 * 15 13 12 41 41 H 1.09001 * 109.47240 * 67.97275 * 15 13 12 42 42 H 1.08994 * 109.46996 * 187.97563 * 15 13 12 43 43 H 0.97003 * 119.99902 * 339.93322 * 18 16 13 44 44 H 0.96993 * 119.99562 * 180.02562 * 22 21 19 45 45 H 1.09005 * 109.87955 * 300.44166 * 27 11 9 46 46 H 1.08996 * 109.88146 * 61.60663 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0915 0.0015 6 7 4.2765 2.2968 0.0002 7 6 5.7369 2.1812 0.0014 8 6 6.3592 3.5788 0.0013 9 6 7.8614 3.4599 0.0019 10 8 8.3831 2.3650 0.0019 11 7 8.6254 4.5702 0.0024 12 6 10.0994 4.5990 0.0089 13 6 10.4696 5.9736 -0.6078 14 1 10.4184 5.9444 -1.6962 15 6 11.8533 6.4276 -0.1386 16 6 9.3576 6.8840 -0.0230 17 1 9.1795 7.7410 -0.6726 18 7 9.7024 7.3252 1.3307 19 6 9.0959 8.4300 1.8662 20 1 8.3636 8.9764 1.2903 21 6 9.4229 8.8483 3.1488 22 7 10.3158 8.1826 3.8504 23 14 8.5961 10.3558 3.8789 24 1 7.6377 10.9202 2.8948 25 1 7.8673 9.9711 5.1142 26 1 9.6254 11.3742 4.2083 27 6 8.1269 5.9534 0.0030 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8593 3.1725 -0.0001 34 1 6.0578 1.6410 0.8921 35 1 6.0592 1.6395 -0.8879 36 1 6.0383 4.1194 -0.8892 37 1 6.0369 4.1201 0.8908 38 1 10.4757 4.5246 1.0291 39 1 10.4974 3.7896 -0.6032 40 1 11.9009 6.3825 0.9494 41 1 12.6139 5.7723 -0.5630 42 1 12.0307 7.4513 -0.4679 43 1 10.3603 6.8346 1.8479 44 1 10.5440 8.4747 4.7467 45 1 7.5126 6.1264 -0.8807 46 1 7.5426 6.1364 0.9047 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673872232.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:11 Heat of formation + Delta-G solvation = -128.126796 kcal Electronic energy + Delta-G solvation = -25945.715182 eV Core-core repulsion = 22062.846255 eV Total energy + Delta-G solvation = -3882.868926 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.28578 -40.75938 -39.12639 -38.42141 -36.27110 -35.67143 -33.97284 -32.49188 -32.04109 -29.72429 -29.26207 -27.64106 -26.66949 -25.75549 -24.47710 -23.20550 -21.89129 -20.69389 -20.10100 -19.36173 -18.37758 -18.20463 -17.55729 -17.47405 -17.21427 -16.79297 -16.43304 -16.20820 -15.86357 -15.72883 -15.39843 -15.27113 -14.82538 -14.53202 -14.41307 -14.05031 -13.94310 -13.48326 -13.31034 -13.15000 -13.06625 -12.95183 -12.84325 -12.78572 -12.50721 -12.34680 -12.30083 -12.04110 -11.94898 -11.43507 -11.35445 -11.13509 -10.97204 -10.83343 -10.75659 -10.22837 -9.62133 -8.97727 -7.89488 -5.17469 1.51571 1.51925 1.52798 1.57723 1.61715 1.65649 2.18688 2.60235 3.12430 3.43118 3.46239 3.63714 3.79310 3.89872 3.94000 3.96962 4.03007 4.12319 4.21720 4.29774 4.43917 4.45795 4.51791 4.59381 4.65481 4.67515 4.73374 4.81953 4.88138 4.88936 4.90428 5.01663 5.03436 5.23186 5.27243 5.30686 5.37483 5.56178 5.62682 6.04857 6.32001 6.50509 6.58993 7.10913 7.19958 7.39485 8.14929 8.36627 9.34137 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.013901 B = 0.002613 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.778676 B =10714.874457 C =12252.979168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.048 3.952 4 C 0.504 3.496 5 O -0.581 6.581 6 N -0.709 5.709 7 C 0.144 3.856 8 C -0.132 4.132 9 C 0.521 3.479 10 O -0.594 6.594 11 N -0.608 5.608 12 C 0.112 3.888 13 C -0.098 4.098 14 H 0.111 0.889 15 C -0.127 4.127 16 C 0.159 3.841 17 H 0.085 0.915 18 N -0.725 5.725 19 C -0.228 4.228 20 H 0.087 0.913 21 C -0.078 4.078 22 N -0.971 5.971 23 Si 0.967 3.033 24 H -0.259 1.259 25 H -0.302 1.302 26 H -0.302 1.302 27 C 0.080 3.920 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.424 0.576 34 H 0.046 0.954 35 H 0.058 0.942 36 H 0.137 0.863 37 H 0.119 0.881 38 H 0.042 0.958 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.373 0.627 44 H 0.247 0.753 45 H 0.099 0.901 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.003 -5.154 -12.894 21.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C -0.032 4.032 4 C 0.291 3.709 5 O -0.460 6.460 6 N -0.365 5.365 7 C 0.020 3.980 8 C -0.171 4.171 9 C 0.311 3.689 10 O -0.476 6.476 11 N -0.340 5.340 12 C -0.010 4.010 13 C -0.118 4.118 14 H 0.130 0.870 15 C -0.185 4.185 16 C 0.049 3.951 17 H 0.102 0.898 18 N -0.365 5.365 19 C -0.360 4.360 20 H 0.105 0.895 21 C -0.270 4.270 22 N -0.623 5.623 23 Si 0.797 3.203 24 H -0.183 1.183 25 H -0.230 1.230 26 H -0.230 1.230 27 C -0.045 4.045 28 H 0.110 0.890 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.262 0.738 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.155 0.845 37 H 0.137 0.863 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.055 0.945 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.207 0.793 44 H 0.056 0.944 45 H 0.117 0.883 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.432 -6.546 -12.888 21.885 hybrid contribution 0.059 0.965 1.352 1.663 sum -16.373 -5.581 -11.536 20.792 Atomic orbital electron populations 1.23033 0.78166 1.04101 1.01781 1.87971 1.22263 1.27014 1.95839 1.22394 0.88204 0.86759 1.05795 1.21116 0.90578 0.83876 0.75342 1.90738 1.75994 1.28964 1.50336 1.45638 1.06019 1.09621 1.75199 1.20750 0.79250 0.96227 1.01800 1.21694 0.89533 0.98118 1.07781 1.20668 0.90331 0.82402 0.75490 1.90703 1.76193 1.27630 1.53066 1.48550 1.07258 1.06828 1.71321 1.22264 0.80378 0.98598 0.99807 1.22617 0.95611 0.92660 1.00920 0.87049 1.21479 0.95203 1.01261 1.00515 1.21513 0.91906 0.94803 0.86841 0.89765 1.42658 1.48915 1.31664 1.13249 1.19699 1.16505 1.02934 0.96866 0.89503 1.25504 1.00882 1.02299 0.98269 1.69832 1.37737 1.43175 1.11508 0.85161 0.77574 0.79433 0.78109 1.18272 1.22973 1.22974 1.23147 0.99337 0.79773 1.02243 0.89009 0.92195 0.91930 0.87014 0.86571 0.73785 0.93540 0.92405 0.84496 0.86319 0.93989 0.90849 0.94527 0.91334 0.92301 0.79318 0.94437 0.88266 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -8.32 10.24 -129.94 -1.33 -9.65 16 3 C 0.05 0.63 6.42 71.24 0.46 1.09 16 4 C 0.50 11.33 7.91 87.66 0.69 12.02 16 5 O -0.58 -20.58 16.50 16.01 0.26 -20.32 16 6 N -0.71 -11.73 5.56 -463.07 -2.57 -14.30 16 7 C 0.14 3.39 4.96 86.38 0.43 3.82 16 8 C -0.13 -2.53 5.01 29.84 0.15 -2.38 16 9 C 0.52 15.65 7.85 87.66 0.69 16.33 16 10 O -0.59 -22.99 16.24 -3.04 -0.05 -23.04 16 11 N -0.61 -17.94 3.32 -811.33 -2.70 -20.64 16 12 C 0.11 3.50 6.36 86.93 0.55 4.06 16 13 C -0.10 -2.70 3.53 -9.32 -0.03 -2.73 16 14 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 15 C -0.13 -3.72 8.85 71.98 0.64 -3.08 16 16 C 0.16 5.03 3.36 46.18 0.16 5.19 16 17 H 0.08 2.47 8.12 -2.39 -0.02 2.45 16 18 N -0.72 -31.61 4.62 -317.34 -1.46 -33.07 16 19 C -0.23 -11.13 9.98 84.03 0.84 -10.29 16 20 H 0.09 3.92 7.83 -2.91 -0.02 3.90 16 21 C -0.08 -4.13 5.50 84.86 0.47 -3.66 16 22 N -0.97 -56.83 13.06 21.65 0.28 -56.55 16 23 Si 0.97 43.12 29.55 68.60 2.03 45.15 16 24 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 25 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 26 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 27 C 0.08 2.15 6.23 86.73 0.54 2.69 16 28 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.42 3.04 8.47 -92.71 -0.79 2.25 16 34 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 35 H 0.06 1.60 8.10 -2.38 -0.02 1.58 16 36 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.12 1.97 8.14 -2.38 -0.02 1.96 16 38 H 0.04 1.54 7.99 -2.39 -0.02 1.52 16 39 H 0.07 2.22 8.03 -2.39 -0.02 2.20 16 40 H 0.04 1.32 6.39 -2.39 -0.02 1.30 16 41 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.37 18.39 6.11 -92.71 -0.57 17.82 16 44 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 45 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 46 H 0.06 1.91 8.04 -2.39 -0.02 1.89 16 Total: -1.00 -80.77 382.41 0.91 -79.86 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: -0.37 Total: 28.02 kcal Atomic # 6 Polarization: 17.73 SS G_CDS: 6.82 Total: 24.55 kcal Atomic # 7 Polarization: -118.11 SS G_CDS: -6.45 Total: -124.56 kcal Atomic # 8 Polarization: -51.90 SS G_CDS: -1.12 Total: -53.01 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -80.77 0.91 -79.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673872232.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.269 kcal (2) G-P(sol) polarization free energy of solvation -80.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds