Wall clock time and date at job start Fri Apr 10 2020 18:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21280 * 119.99747 * 2 1 4 4 N 1.34773 * 119.99784 * 180.02562 * 2 1 3 5 5 C 1.46502 * 119.99755 * 179.97438 * 4 2 1 6 6 H 1.08992 * 109.47335 * 325.00277 * 5 4 2 7 7 C 1.53001 * 109.46757 * 85.00323 * 5 4 2 8 8 C 1.50697 * 109.47131 * 204.99718 * 5 4 2 9 9 O 1.21280 * 119.99928 * 0.02562 * 8 5 4 10 10 N 1.34779 * 119.99906 * 180.02562 * 8 5 4 11 11 C 1.46500 * 119.99927 * 174.88399 * 10 8 5 12 12 C 1.53000 * 109.45845 * 302.69140 * 11 10 8 13 13 O 1.42904 * 109.47092 * 300.72634 * 12 11 10 14 14 C 1.53043 * 109.45890 * 182.71868 * 11 10 8 15 15 C 1.53162 * 109.32899 * 301.35771 * 14 11 10 16 16 N 1.46925 * 108.76890 * 305.35552 * 15 14 11 17 17 C 1.36932 * 120.63277 * 233.58938 * 16 15 14 18 18 H 1.08000 * 119.99718 * 31.69915 * 17 16 15 19 19 C 1.38818 * 120.00404 * 211.70205 * 17 16 15 20 20 N 1.31623 * 119.99498 * 11.00464 * 19 17 16 21 21 Si 1.86787 * 120.00269 * 191.00691 * 19 17 16 22 22 H 1.48497 * 109.47523 * 89.99758 * 21 19 17 23 23 H 1.48500 * 109.47288 * 209.99746 * 21 19 17 24 24 H 1.48502 * 109.47086 * 329.99872 * 21 19 17 25 25 C 1.46929 * 118.73786 * 53.60904 * 16 15 14 26 26 C 1.53035 * 109.46203 * 62.66496 * 11 10 8 27 27 H 1.09001 * 109.47486 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47181 * 120.00276 * 1 2 3 29 29 H 1.09003 * 109.46963 * 240.00281 * 1 2 3 30 30 H 0.96996 * 120.00321 * 359.97438 * 4 2 1 31 31 H 1.09001 * 109.47399 * 299.99646 * 7 5 4 32 32 H 1.08995 * 109.47715 * 60.00030 * 7 5 4 33 33 H 1.08999 * 109.47141 * 180.02562 * 7 5 4 34 34 H 0.97003 * 119.99689 * 354.88237 * 10 8 5 35 35 H 1.09000 * 109.46955 * 60.72600 * 12 11 10 36 36 H 1.09002 * 109.46953 * 180.72784 * 12 11 10 37 37 H 0.96697 * 113.99604 * 180.02562 * 13 12 11 38 38 H 1.08999 * 109.49589 * 61.29843 * 14 11 10 39 39 H 1.08993 * 109.49934 * 181.39052 * 14 11 10 40 40 H 1.08999 * 109.59084 * 185.57131 * 15 14 11 41 41 H 1.08999 * 109.59247 * 65.13945 * 15 14 11 42 42 H 0.96996 * 119.99893 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.58766 * 186.61017 * 25 16 15 44 44 H 1.08997 * 109.70756 * 66.24844 * 25 16 15 45 45 H 1.09001 * 109.49938 * 178.60855 * 26 11 10 46 46 H 1.08998 * 109.49760 * 298.70507 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 1 4.0090 -0.3253 -0.5904 7 6 4.1563 -1.0419 1.4358 8 6 4.1480 -2.4548 -0.6020 9 8 3.3597 -3.2899 -0.9918 10 7 5.4730 -2.6781 -0.7061 11 6 5.9621 -3.9732 -1.1856 12 6 5.4176 -5.0872 -0.2894 13 8 5.8466 -4.8686 1.0561 14 6 7.4919 -3.9875 -1.1444 15 6 8.0331 -2.8496 -2.0151 16 7 7.4649 -2.9752 -3.3642 17 6 8.2799 -3.0109 -4.4640 18 1 9.2650 -3.4478 -4.3921 19 6 7.8400 -2.4856 -5.6713 20 7 6.7398 -1.7644 -5.7132 21 14 8.8094 -2.8023 -7.2362 22 1 8.3155 -4.0451 -7.8816 23 1 8.6348 -1.6583 -8.1668 24 1 10.2488 -2.9553 -6.9044 25 6 6.0055 -3.0614 -3.5108 26 6 5.4870 -4.1972 -2.6230 27 1 -0.3634 1.0276 0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 -0.3633 -0.5138 0.8900 30 1 1.6959 -2.0072 -0.0005 31 1 3.7932 -0.1106 1.8705 32 1 3.7933 -1.8838 2.0252 33 1 5.2463 -1.0414 1.4354 34 1 6.1028 -1.9814 -0.4636 35 1 4.3283 -5.0851 -0.3283 36 1 5.7917 -6.0497 -0.6382 37 1 5.5377 -5.5387 1.6811 38 1 7.8294 -3.8512 -0.1170 39 1 7.8572 -4.9416 -1.5242 40 1 9.1198 -2.9155 -2.0687 41 1 7.7440 -1.8908 -1.5847 42 1 6.4322 -1.3976 -6.5568 43 1 5.7543 -3.2673 -4.5513 44 1 5.5491 -2.1204 -3.2040 45 1 5.8711 -5.1494 -2.9890 46 1 4.3974 -4.2101 -2.6482 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674299481.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:19 Heat of formation + Delta-G solvation = -101.839640 kcal Electronic energy + Delta-G solvation = -28237.481123 eV Core-core repulsion = 24355.752093 eV Total energy + Delta-G solvation = -3881.729030 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.57498 -39.44988 -37.65260 -36.15281 -34.90259 -34.11737 -32.34030 -31.33531 -30.32708 -29.76529 -28.77241 -26.76232 -24.53381 -23.88786 -22.32071 -21.36097 -20.56267 -20.19624 -18.73938 -17.83607 -17.22730 -16.81315 -16.35581 -15.89782 -15.41201 -15.08988 -14.95700 -14.79407 -14.10324 -14.01884 -13.64098 -13.60026 -13.38424 -13.21827 -12.90733 -12.78233 -12.63257 -12.46919 -12.26646 -12.17509 -11.88585 -11.59281 -11.43105 -11.27003 -10.89755 -10.76256 -10.38987 -10.29887 -10.07896 -9.98124 -9.97088 -9.77217 -9.59008 -9.30126 -9.01461 -8.63830 -8.48248 -6.62406 -5.78618 -3.27556 2.56400 2.82032 2.95194 3.36913 3.43539 3.44857 3.57134 4.38995 4.48090 4.64547 4.79245 5.02617 5.11866 5.15073 5.22553 5.26322 5.32875 5.42100 5.50903 5.53556 5.62972 5.65593 5.72085 5.78599 5.87150 6.04313 6.06347 6.22158 6.28086 6.33359 6.48459 6.61219 6.66756 6.73783 6.88688 6.98886 7.37096 7.46193 7.69412 7.70595 7.78302 7.81208 8.17058 8.42784 8.47135 9.21702 9.82888 10.41165 11.29135 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.013827 B = 0.004341 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.531685 B = 6449.170223 C = 7727.167593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.512 3.488 3 O -0.548 6.548 4 N -0.711 5.711 5 C 0.121 3.879 6 H 0.113 0.887 7 C -0.153 4.153 8 C 0.520 3.480 9 O -0.545 6.545 10 N -0.692 5.692 11 C 0.194 3.806 12 C 0.062 3.938 13 O -0.568 6.568 14 C -0.133 4.133 15 C 0.144 3.856 16 N -0.591 5.591 17 C -0.256 4.256 18 H 0.064 0.936 19 C 0.006 3.994 20 N -0.903 5.903 21 Si 0.904 3.096 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.181 3.819 26 C -0.153 4.153 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.409 0.591 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.401 0.599 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.370 0.630 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.014 0.986 42 H 0.254 0.746 43 H 0.086 0.914 44 H 0.017 0.983 45 H 0.061 0.939 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.729 -3.532 15.339 17.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.299 3.701 3 O -0.426 6.426 4 N -0.365 5.365 5 C 0.012 3.988 6 H 0.130 0.870 7 C -0.212 4.212 8 C 0.305 3.695 9 O -0.424 6.424 10 N -0.342 5.342 11 C 0.109 3.891 12 C -0.016 4.016 13 O -0.372 6.372 14 C -0.173 4.173 15 C 0.017 3.983 16 N -0.314 5.314 17 C -0.386 4.386 18 H 0.082 0.918 19 C -0.193 4.193 20 N -0.547 5.547 21 Si 0.734 3.266 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.204 1.204 25 C 0.056 3.944 26 C -0.193 4.193 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.246 0.754 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.237 0.763 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.215 0.785 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.032 0.968 42 H 0.064 0.936 43 H 0.104 0.896 44 H 0.036 0.964 45 H 0.079 0.921 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.607 -2.769 14.619 17.189 hybrid contribution 0.262 -0.768 -0.585 1.001 sum -8.345 -3.538 14.033 16.706 Atomic orbital electron populations 1.21895 0.91459 1.05443 1.04370 1.20810 0.90676 0.83254 0.75330 1.90729 1.70811 1.31387 1.49662 1.45786 1.05911 1.09568 1.75239 1.20777 0.81914 0.97685 0.98379 0.86964 1.22064 1.01857 1.02878 0.94362 1.20298 0.83025 0.87926 0.78295 1.90591 1.55509 1.46841 1.49432 1.45820 1.06159 1.16562 1.65698 1.20334 0.94609 0.81056 0.93123 1.22751 0.99492 0.97465 0.81894 1.86475 1.78217 1.53948 1.18582 1.22242 0.92682 1.02070 1.00291 1.20905 0.97032 0.93578 0.86748 1.44029 1.01942 1.84984 1.00423 1.19169 0.98868 1.32328 0.88220 0.91827 1.25176 0.97979 0.97053 0.99084 1.69983 1.23891 1.35552 1.25227 0.86267 0.79667 0.77304 0.83346 1.21435 1.21700 1.20413 1.20651 0.82868 0.92333 0.98590 1.22614 1.01304 1.02137 0.93201 0.88958 0.89192 0.89470 0.75432 0.91238 0.91926 0.90849 0.76347 0.91777 0.93476 0.78474 0.91626 0.90985 0.92465 0.96788 0.93580 0.89595 0.96444 0.92053 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 10.32 36.01 0.37 -1.01 16 2 C 0.51 6.47 7.90 -10.99 -0.09 6.39 16 3 O -0.55 -9.21 16.75 5.56 0.09 -9.12 16 4 N -0.71 -8.67 4.95 -54.93 -0.27 -8.94 16 5 C 0.12 1.63 2.98 -69.08 -0.21 1.42 16 6 H 0.11 1.70 7.58 -51.93 -0.39 1.31 16 7 C -0.15 -1.70 9.39 37.16 0.35 -1.35 16 8 C 0.52 7.99 6.63 -10.99 -0.07 7.91 16 9 O -0.55 -9.35 12.09 5.56 0.07 -9.28 16 10 N -0.69 -10.70 3.83 -47.57 -0.18 -10.88 16 11 C 0.19 3.20 0.44 -131.78 -0.06 3.14 16 12 C 0.06 0.89 5.68 37.16 0.21 1.10 16 13 O -0.57 -7.11 12.84 -35.23 -0.45 -7.56 16 14 C -0.13 -2.22 4.84 -26.63 -0.13 -2.34 16 15 C 0.14 2.87 6.24 -3.73 -0.02 2.84 16 16 N -0.59 -14.40 2.98 -172.33 -0.51 -14.92 16 17 C -0.26 -6.93 9.58 -15.06 -0.14 -7.07 16 18 H 0.06 1.69 7.85 -52.49 -0.41 1.28 16 19 C 0.01 0.17 5.04 -17.43 -0.09 0.08 16 20 N -0.90 -26.27 11.10 55.49 0.62 -25.66 16 21 Si 0.90 21.67 29.57 -169.99 -5.03 16.64 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.18 4.33 4.99 -3.71 -0.02 4.31 16 26 C -0.15 -2.98 4.71 -26.61 -0.13 -3.11 16 27 H 0.09 0.73 8.12 -51.93 -0.42 0.31 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.41 4.46 7.79 -40.82 -0.32 4.14 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.75 7.69 -51.93 -0.40 0.36 16 34 H 0.40 5.87 6.77 -40.82 -0.28 5.59 16 35 H 0.06 0.97 6.17 -51.93 -0.32 0.65 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.37 3.02 9.12 45.56 0.42 3.43 16 38 H 0.07 0.99 7.66 -51.93 -0.40 0.59 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.13 7.93 -51.93 -0.41 0.71 16 41 H 0.01 0.28 6.89 -51.93 -0.36 -0.08 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.09 2.35 6.14 -51.93 -0.32 2.03 16 44 H 0.02 0.45 7.74 -51.93 -0.40 0.04 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.07 1.46 6.23 -51.93 -0.32 1.13 16 LS Contribution 363.15 15.07 5.47 5.47 Total: -1.00 -33.50 363.15 -6.65 -40.15 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -6.43 Total: 11.79 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: -0.02 Total: 12.31 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: -0.35 Total: -60.40 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.29 Total: -25.96 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.50 -6.65 -40.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674299481.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.693 kcal (2) G-P(sol) polarization free energy of solvation -33.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds