Wall clock time and date at job start Fri Apr 10 2020 18:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21280 * 119.99747 * 2 1 4 4 N 1.34773 * 119.99784 * 180.02562 * 2 1 3 5 5 C 1.46502 * 119.99755 * 179.97438 * 4 2 1 6 6 H 1.08992 * 109.47335 * 325.00277 * 5 4 2 7 7 C 1.53001 * 109.46757 * 85.00323 * 5 4 2 8 8 C 1.50697 * 109.47131 * 204.99718 * 5 4 2 9 9 O 1.21280 * 119.99928 * 0.02562 * 8 5 4 10 10 N 1.34779 * 119.99906 * 180.02562 * 8 5 4 11 11 C 1.46500 * 119.99927 * 174.88399 * 10 8 5 12 12 C 1.53000 * 109.45845 * 302.69140 * 11 10 8 13 13 O 1.42904 * 109.47092 * 300.72634 * 12 11 10 14 14 C 1.53043 * 109.45890 * 182.71868 * 11 10 8 15 15 C 1.53162 * 109.32899 * 301.35771 * 14 11 10 16 16 N 1.46925 * 108.76890 * 305.35552 * 15 14 11 17 17 C 1.36932 * 120.63277 * 233.58938 * 16 15 14 18 18 H 1.08000 * 119.99718 * 31.69915 * 17 16 15 19 19 C 1.38818 * 120.00404 * 211.70205 * 17 16 15 20 20 N 1.31623 * 119.99498 * 11.00464 * 19 17 16 21 21 Si 1.86787 * 120.00269 * 191.00691 * 19 17 16 22 22 H 1.48497 * 109.47523 * 89.99758 * 21 19 17 23 23 H 1.48500 * 109.47288 * 209.99746 * 21 19 17 24 24 H 1.48502 * 109.47086 * 329.99872 * 21 19 17 25 25 C 1.46929 * 118.73786 * 53.60904 * 16 15 14 26 26 C 1.53035 * 109.46203 * 62.66496 * 11 10 8 27 27 H 1.09001 * 109.47486 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47181 * 120.00276 * 1 2 3 29 29 H 1.09003 * 109.46963 * 240.00281 * 1 2 3 30 30 H 0.96996 * 120.00321 * 359.97438 * 4 2 1 31 31 H 1.09001 * 109.47399 * 299.99646 * 7 5 4 32 32 H 1.08995 * 109.47715 * 60.00030 * 7 5 4 33 33 H 1.08999 * 109.47141 * 180.02562 * 7 5 4 34 34 H 0.97003 * 119.99689 * 354.88237 * 10 8 5 35 35 H 1.09000 * 109.46955 * 60.72600 * 12 11 10 36 36 H 1.09002 * 109.46953 * 180.72784 * 12 11 10 37 37 H 0.96697 * 113.99604 * 180.02562 * 13 12 11 38 38 H 1.08999 * 109.49589 * 61.29843 * 14 11 10 39 39 H 1.08993 * 109.49934 * 181.39052 * 14 11 10 40 40 H 1.08999 * 109.59084 * 185.57131 * 15 14 11 41 41 H 1.08999 * 109.59247 * 65.13945 * 15 14 11 42 42 H 0.96996 * 119.99893 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.58766 * 186.61017 * 25 16 15 44 44 H 1.08997 * 109.70756 * 66.24844 * 25 16 15 45 45 H 1.09001 * 109.49938 * 178.60855 * 26 11 10 46 46 H 1.08998 * 109.49760 * 298.70507 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 1 4.0090 -0.3253 -0.5904 7 6 4.1563 -1.0419 1.4358 8 6 4.1480 -2.4548 -0.6020 9 8 3.3597 -3.2899 -0.9918 10 7 5.4730 -2.6781 -0.7061 11 6 5.9621 -3.9732 -1.1856 12 6 5.4176 -5.0872 -0.2894 13 8 5.8466 -4.8686 1.0561 14 6 7.4919 -3.9875 -1.1444 15 6 8.0331 -2.8496 -2.0151 16 7 7.4649 -2.9752 -3.3642 17 6 8.2799 -3.0109 -4.4640 18 1 9.2650 -3.4478 -4.3921 19 6 7.8400 -2.4856 -5.6713 20 7 6.7398 -1.7644 -5.7132 21 14 8.8094 -2.8023 -7.2362 22 1 8.3155 -4.0451 -7.8816 23 1 8.6348 -1.6583 -8.1668 24 1 10.2488 -2.9553 -6.9044 25 6 6.0055 -3.0614 -3.5108 26 6 5.4870 -4.1972 -2.6230 27 1 -0.3634 1.0276 0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 -0.3633 -0.5138 0.8900 30 1 1.6959 -2.0072 -0.0005 31 1 3.7932 -0.1106 1.8705 32 1 3.7933 -1.8838 2.0252 33 1 5.2463 -1.0414 1.4354 34 1 6.1028 -1.9814 -0.4636 35 1 4.3283 -5.0851 -0.3283 36 1 5.7917 -6.0497 -0.6382 37 1 5.5377 -5.5387 1.6811 38 1 7.8294 -3.8512 -0.1170 39 1 7.8572 -4.9416 -1.5242 40 1 9.1198 -2.9155 -2.0687 41 1 7.7440 -1.8908 -1.5847 42 1 6.4322 -1.3976 -6.5568 43 1 5.7543 -3.2673 -4.5513 44 1 5.5491 -2.1204 -3.2040 45 1 5.8711 -5.1494 -2.9890 46 1 4.3974 -4.2101 -2.6482 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674299481.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:19 Heat of formation + Delta-G solvation = -129.067458 kcal Electronic energy + Delta-G solvation = -28238.661810 eV Core-core repulsion = 24355.752093 eV Total energy + Delta-G solvation = -3882.909717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.82336 -40.59265 -39.02276 -37.41202 -36.03070 -35.64637 -33.85037 -32.73308 -31.75450 -31.34422 -29.62866 -28.37504 -25.68554 -25.54621 -23.95844 -22.78107 -21.88359 -21.35781 -20.19764 -19.07232 -18.69896 -18.00280 -17.60560 -17.07217 -16.88318 -16.48119 -16.22760 -16.08688 -15.73725 -15.25898 -15.12523 -14.90830 -14.76881 -14.61135 -14.28222 -14.00515 -13.68333 -13.48912 -13.31797 -13.25142 -13.17692 -12.99096 -12.96521 -12.63826 -12.61500 -12.46017 -12.22087 -12.03451 -11.86083 -11.44093 -11.32182 -11.04762 -11.00855 -10.56586 -10.49674 -10.17457 -9.96221 -8.62540 -7.87291 -5.38816 1.45904 1.46556 1.53478 1.55667 1.62695 1.89020 2.46743 2.50184 3.26513 3.32670 3.51073 3.71263 3.86340 3.93955 4.01666 4.06609 4.12376 4.28316 4.49142 4.52341 4.55941 4.62382 4.65816 4.66873 4.72142 4.76547 4.78296 4.96794 5.01467 5.08570 5.13580 5.16575 5.18221 5.31644 5.33498 5.46078 5.60596 5.64132 5.74442 6.40142 6.50745 6.55678 6.94039 7.15092 7.17221 7.21493 7.85135 8.37897 9.18107 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.013827 B = 0.004341 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.531685 B = 6449.170223 C = 7727.167593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.505 3.495 3 O -0.597 6.597 4 N -0.706 5.706 5 C 0.123 3.877 6 H 0.090 0.910 7 C -0.142 4.142 8 C 0.519 3.481 9 O -0.563 6.563 10 N -0.691 5.691 11 C 0.194 3.806 12 C 0.077 3.923 13 O -0.572 6.572 14 C -0.117 4.117 15 C 0.139 3.861 16 N -0.607 5.607 17 C -0.262 4.262 18 H 0.069 0.931 19 C -0.049 4.049 20 N -0.937 5.937 21 Si 0.968 3.032 22 H -0.286 1.286 23 H -0.297 1.297 24 H -0.265 1.265 25 C 0.195 3.805 26 C -0.139 4.139 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.417 0.583 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.405 0.595 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.393 0.607 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.019 0.981 42 H 0.248 0.752 43 H 0.044 0.956 44 H -0.009 1.009 45 H 0.061 0.939 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.606 -4.964 17.291 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.295 3.705 3 O -0.478 6.478 4 N -0.360 5.360 5 C 0.014 3.986 6 H 0.108 0.892 7 C -0.200 4.200 8 C 0.305 3.695 9 O -0.443 6.443 10 N -0.342 5.342 11 C 0.108 3.892 12 C -0.001 4.001 13 O -0.379 6.379 14 C -0.156 4.156 15 C 0.014 3.986 16 N -0.331 5.331 17 C -0.393 4.393 18 H 0.086 0.914 19 C -0.244 4.244 20 N -0.583 5.583 21 Si 0.796 3.204 22 H -0.213 1.213 23 H -0.224 1.224 24 H -0.190 1.190 25 C 0.070 3.930 26 C -0.179 4.179 27 H 0.112 0.888 28 H 0.123 0.877 29 H 0.135 0.865 30 H 0.255 0.745 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.241 0.759 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.242 0.758 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.037 0.963 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.009 0.991 45 H 0.080 0.920 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.478 -4.248 16.624 19.138 hybrid contribution 0.233 -0.325 -1.153 1.221 sum -8.245 -4.573 15.471 18.117 Atomic orbital electron populations 1.21922 0.87563 1.06281 1.06461 1.21689 0.92517 0.82376 0.73926 1.90707 1.72138 1.32967 1.51992 1.45826 1.05428 1.10049 1.74723 1.20712 0.82877 0.95584 0.99434 0.89217 1.21983 1.02387 1.03124 0.92523 1.20582 0.82803 0.88256 0.77847 1.90579 1.55886 1.47649 1.50155 1.45799 1.06407 1.16468 1.65493 1.20240 0.94647 0.82523 0.91766 1.22400 0.98688 0.96502 0.82560 1.86406 1.78244 1.55260 1.17990 1.22071 0.92402 1.00405 1.00746 1.21083 0.97211 0.95249 0.85051 1.44245 1.01840 1.85308 1.01689 1.19537 0.99162 1.31293 0.89282 0.91354 1.25923 0.99047 0.97377 1.02090 1.70163 1.25669 1.37150 1.25344 0.85263 0.78980 0.76633 0.79542 1.21281 1.22409 1.18993 1.20290 0.83073 0.92661 0.97023 1.22359 1.00643 1.00037 0.94845 0.88815 0.87722 0.86492 0.74479 0.91552 0.90784 0.89913 0.75872 0.92672 0.92249 0.75837 0.89020 0.90942 0.92238 0.96332 0.94328 0.93790 0.99092 0.92040 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 10.32 71.24 0.74 -1.57 16 2 C 0.51 12.53 7.90 87.66 0.69 13.22 16 3 O -0.60 -20.42 16.75 -3.03 -0.05 -20.47 16 4 N -0.71 -16.75 4.95 -446.11 -2.21 -18.96 16 5 C 0.12 3.27 2.98 44.24 0.13 3.41 16 6 H 0.09 2.83 7.58 -2.39 -0.02 2.81 16 7 C -0.14 -2.96 9.39 71.98 0.68 -2.28 16 8 C 0.52 15.64 6.63 87.66 0.58 16.23 16 9 O -0.56 -18.93 12.09 -3.03 -0.04 -18.96 16 10 N -0.69 -20.66 3.83 -422.80 -1.62 -22.28 16 11 C 0.19 6.08 0.44 3.63 0.00 6.08 16 12 C 0.08 1.98 5.68 71.98 0.41 2.39 16 13 O -0.57 -12.09 12.84 -148.98 -1.91 -14.01 16 14 C -0.12 -3.61 4.84 30.66 0.15 -3.46 16 15 C 0.14 5.40 6.24 86.35 0.54 5.94 16 16 N -0.61 -29.87 2.98 -699.14 -2.09 -31.95 16 17 C -0.26 -14.30 9.58 84.04 0.80 -13.50 16 18 H 0.07 3.60 7.85 -2.91 -0.02 3.57 16 19 C -0.05 -2.75 5.04 84.86 0.43 -2.33 16 20 N -0.94 -56.55 11.10 21.65 0.24 -56.31 16 21 Si 0.97 45.19 29.57 68.60 2.03 47.21 16 22 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 23 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 C 0.20 9.63 4.99 86.36 0.43 10.06 16 26 C -0.14 -5.43 4.71 30.67 0.14 -5.28 16 27 H 0.09 1.34 8.12 -2.39 -0.02 1.32 16 28 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.42 8.56 7.79 -92.71 -0.72 7.84 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 1.56 7.69 -2.39 -0.02 1.54 16 34 H 0.41 11.41 6.77 -92.71 -0.63 10.79 16 35 H 0.06 1.54 6.17 -2.39 -0.01 1.53 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.39 4.74 9.12 -74.06 -0.68 4.07 16 38 H 0.09 2.42 7.66 -2.39 -0.02 2.41 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.06 2.26 7.93 -2.39 -0.02 2.24 16 41 H 0.02 0.71 6.89 -2.39 -0.02 0.70 16 42 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 43 H 0.04 2.52 6.14 -2.39 -0.01 2.51 16 44 H -0.01 -0.48 7.74 -2.39 -0.02 -0.50 16 45 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.07 2.68 6.23 -2.39 -0.01 2.66 16 Total: -1.00 -74.51 363.15 -0.93 -75.44 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: -1.01 Total: 31.39 kcal Atomic # 6 Polarization: 23.18 SS G_CDS: 5.72 Total: 28.90 kcal Atomic # 7 Polarization: -123.84 SS G_CDS: -5.67 Total: -129.51 kcal Atomic # 8 Polarization: -51.44 SS G_CDS: -2.00 Total: -53.44 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -74.51 -0.93 -75.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674299481.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.623 kcal (2) G-P(sol) polarization free energy of solvation -74.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds