Wall clock time and date at job start Fri Apr 10 2020 18:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47377 * 2 1 4 4 O 1.42903 * 109.46838 * 180.02562 * 3 2 1 5 5 C 1.42902 * 113.99718 * 180.02562 * 4 3 2 6 6 C 1.50691 * 109.47189 * 180.02562 * 5 4 3 7 7 O 1.21289 * 120.00113 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00316 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00122 * 179.97438 * 8 6 5 10 10 H 1.08993 * 112.90929 * 336.25213 * 9 8 6 11 11 C 1.53962 * 113.66387 * 107.55425 * 9 8 6 12 12 C 1.53782 * 87.11063 * 139.88885 * 11 9 8 13 13 H 1.08997 * 113.61225 * 89.18406 * 12 11 9 14 14 N 1.46904 * 113.61210 * 220.08983 * 12 11 9 15 15 C 1.46901 * 110.99704 * 252.49938 * 14 12 11 16 16 C 1.50695 * 109.47160 * 180.02562 * 15 14 12 17 17 O 1.21296 * 119.99898 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00546 * 180.02562 * 16 15 14 19 19 C 1.37091 * 120.00100 * 179.97438 * 18 16 15 20 20 H 1.07996 * 120.00633 * 359.97438 * 19 18 16 21 21 C 1.38955 * 119.99556 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00165 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99967 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46985 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47415 * 119.99465 * 23 21 19 26 26 H 1.48500 * 109.47091 * 239.99983 * 23 21 19 27 27 C 1.53781 * 87.08260 * 334.63747 * 12 11 9 28 28 H 1.09001 * 109.46957 * 300.00112 * 1 2 3 29 29 H 1.09005 * 109.47145 * 59.99754 * 1 2 3 30 30 H 1.08998 * 109.47718 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46648 * 240.00225 * 2 1 3 32 32 H 1.08996 * 109.47113 * 120.00416 * 2 1 3 33 33 H 1.08995 * 109.46491 * 60.00027 * 3 2 1 34 34 H 1.09003 * 109.46870 * 299.99801 * 3 2 1 35 35 H 1.09002 * 109.47200 * 59.99473 * 5 4 3 36 36 H 1.09005 * 109.46704 * 300.00033 * 5 4 3 37 37 H 0.97002 * 120.00080 * 0.02562 * 8 6 5 38 38 H 1.08997 * 113.53543 * 25.33559 * 11 9 8 39 39 H 1.08994 * 113.66446 * 254.45762 * 11 9 8 40 40 H 1.00895 * 111.00051 * 16.44850 * 14 12 11 41 41 H 1.09009 * 109.46980 * 300.00288 * 15 14 12 42 42 H 1.08999 * 109.47354 * 59.99558 * 15 14 12 43 43 H 0.96997 * 119.99365 * 359.97438 * 18 16 15 44 44 H 0.97007 * 119.99948 * 180.02562 * 22 21 19 45 45 H 1.09002 * 113.61445 * 139.98212 * 27 12 11 46 46 H 1.09002 * 113.61408 * 270.79943 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4423 -0.0006 5 6 4.0504 2.7478 -0.0001 6 6 5.5526 2.6288 -0.0014 7 8 6.0742 1.5338 -0.0022 8 7 6.3166 3.7390 -0.0017 9 6 7.7770 3.6232 -0.0024 10 1 8.1276 2.6736 0.4016 11 6 8.4260 3.9985 -1.3472 12 6 9.5295 4.6933 -0.5321 13 1 10.3600 4.0366 -0.2731 14 7 9.9690 5.9718 -1.1067 15 6 11.3064 5.8493 -1.7021 16 6 11.7228 7.1775 -2.2794 17 8 10.9785 8.1322 -2.2029 18 7 12.9218 7.3045 -2.8817 19 6 13.3004 8.5127 -3.4073 20 1 12.6377 9.3628 -3.3392 21 6 14.5363 8.6434 -4.0287 22 7 15.3425 7.6090 -4.1121 23 14 15.0519 10.2895 -4.7456 24 1 13.9734 11.2859 -4.5234 25 1 16.2972 10.7508 -4.0809 26 1 15.2948 10.1404 -6.2030 27 6 8.4923 4.8476 0.5928 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.7291 3.2883 0.8903 36 1 3.7283 3.2892 -0.8897 37 1 5.8995 4.6148 -0.0007 38 1 7.8255 4.6854 -1.9436 39 1 8.7795 3.1394 -1.9172 40 1 9.3021 6.3127 -1.7828 41 1 12.0194 5.5474 -0.9348 42 1 11.2847 5.0996 -2.4930 43 1 13.5168 6.5410 -2.9432 44 1 16.2055 7.7003 -4.5456 45 1 8.8994 4.6739 1.5889 46 1 7.9111 5.7674 0.5276 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690326992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:43 Heat of formation + Delta-G solvation = -105.119863 kcal Electronic energy + Delta-G solvation = -24674.805989 eV Core-core repulsion = 20792.934718 eV Total energy + Delta-G solvation = -3881.871271 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.40504 -39.07756 -38.16546 -37.72737 -34.63681 -34.11499 -33.86804 -32.58021 -31.19624 -28.89706 -26.82963 -26.02402 -25.79700 -24.30517 -22.78095 -22.02552 -20.83052 -20.12285 -19.15011 -17.88617 -17.55850 -17.14507 -16.94184 -16.40832 -15.92720 -15.47141 -15.43031 -15.03124 -14.73718 -14.47513 -14.19402 -14.06553 -13.81883 -13.33076 -13.25237 -12.95713 -12.61256 -12.57326 -12.53680 -12.43915 -12.10982 -11.65956 -11.56259 -11.40768 -11.34553 -11.25364 -11.08860 -10.98929 -10.84746 -10.34780 -10.22792 -10.14441 -9.98653 -9.52572 -9.26047 -8.45718 -8.03484 -7.95729 -6.42197 -3.83023 2.32277 2.46991 3.15984 3.26603 3.33723 3.54877 3.90432 4.10321 4.29030 4.32634 4.46975 4.49120 4.53269 4.58557 4.68796 4.75155 4.78761 4.83899 4.87147 4.98692 5.00685 5.17906 5.24634 5.27020 5.43003 5.53310 5.60609 5.64869 5.65836 5.74920 5.78048 5.81642 5.90174 5.94792 6.01359 6.25708 6.34896 6.62445 7.20217 7.25447 7.54924 7.64085 7.95242 8.06077 8.60742 9.17467 9.54002 10.05234 10.75565 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.041209 B = 0.001582 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.302665 B =17689.873913 C =17849.476672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.365 6.365 5 C 0.044 3.956 6 C 0.513 3.487 7 O -0.520 6.520 8 N -0.716 5.716 9 C 0.123 3.877 10 H 0.115 0.885 11 C -0.182 4.182 12 C 0.071 3.929 13 H 0.100 0.900 14 N -0.654 5.654 15 C 0.049 3.951 16 C 0.440 3.560 17 O -0.585 6.585 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C -0.132 4.132 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.402 0.598 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.351 0.649 41 H 0.087 0.913 42 H 0.045 0.955 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.076 0.924 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.220 -12.622 8.904 28.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.283 6.283 5 C -0.036 4.036 6 C 0.298 3.702 7 O -0.395 6.395 8 N -0.369 5.369 9 C 0.018 3.982 10 H 0.133 0.867 11 C -0.222 4.222 12 C -0.041 4.041 13 H 0.118 0.882 14 N -0.285 5.285 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.469 6.469 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.171 4.171 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.237 0.763 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.172 0.828 41 H 0.105 0.895 42 H 0.063 0.937 43 H 0.226 0.774 44 H 0.081 0.919 45 H 0.094 0.906 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -23.801 -12.711 9.455 28.591 hybrid contribution 0.190 0.531 -1.283 1.401 sum -23.611 -12.181 8.172 27.796 Atomic orbital electron populations 1.21699 0.94609 1.02385 1.02008 1.21453 0.95642 0.95353 1.03721 1.22651 0.80389 0.98386 1.00297 1.88012 1.19647 1.25186 1.95444 1.22202 0.91719 0.87049 1.02653 1.20284 0.88633 0.84801 0.76460 1.90739 1.74595 1.26508 1.47620 1.45875 1.06884 1.08547 1.75605 1.22461 0.78008 1.00327 0.97403 0.86664 1.24280 0.98867 1.01627 0.97443 1.22808 0.95256 0.90575 0.95429 0.88182 1.60014 1.03578 1.24915 1.40040 1.21727 0.91766 0.96593 0.98254 1.19834 0.83752 0.89737 0.84126 1.90518 1.53504 1.40487 1.62415 1.41873 1.15222 1.12698 1.50210 1.19756 1.01263 0.89397 1.32505 0.87869 1.25263 0.95875 0.99056 0.97731 1.69621 1.10301 1.30051 1.44286 0.85805 0.78606 0.81585 0.78367 1.19216 1.20729 1.20783 1.23472 0.97213 0.97295 0.99152 0.92516 0.92488 0.91903 0.90928 0.90952 0.93116 0.93099 0.90221 0.90211 0.76347 0.89433 0.90987 0.82839 0.89522 0.93713 0.77443 0.91915 0.90551 0.88975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.91 37.16 0.37 -0.28 16 2 C -0.12 -0.78 6.30 -26.73 -0.17 -0.95 16 3 C 0.06 0.39 5.94 37.16 0.22 0.62 16 4 O -0.36 -3.72 9.88 -55.14 -0.54 -4.27 16 5 C 0.04 0.33 6.42 36.00 0.23 0.56 16 6 C 0.51 5.47 7.91 -10.99 -0.09 5.38 16 7 O -0.52 -8.06 16.10 -14.36 -0.23 -8.29 16 8 N -0.72 -6.00 5.36 -52.93 -0.28 -6.28 16 9 C 0.12 1.20 4.25 -67.02 -0.28 0.91 16 10 H 0.12 1.27 7.47 -51.93 -0.39 0.88 16 11 C -0.18 -1.90 7.50 -25.82 -0.19 -2.09 16 12 C 0.07 0.82 4.18 -66.90 -0.28 0.54 16 13 H 0.10 1.10 7.87 -51.93 -0.41 0.69 16 14 N -0.65 -10.06 6.24 -107.13 -0.67 -10.73 16 15 C 0.05 0.85 6.01 -4.98 -0.03 0.82 16 16 C 0.44 10.31 7.82 -10.99 -0.09 10.23 16 17 O -0.58 -15.75 15.78 5.54 0.09 -15.66 16 18 N -0.56 -14.25 5.29 -10.96 -0.06 -14.30 16 19 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 20 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 23 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 C -0.13 -1.28 7.62 -25.92 -0.20 -1.47 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.40 2.22 8.73 -40.82 -0.36 1.86 16 38 H 0.09 0.90 7.82 -51.93 -0.41 0.50 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.35 5.56 7.89 -39.29 -0.31 5.25 16 41 H 0.09 1.39 8.13 -51.92 -0.42 0.96 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 44 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.09 0.88 8.12 -51.93 -0.42 0.45 16 LS Contribution 388.71 15.07 5.86 5.86 Total: -1.00 -34.91 388.71 -8.51 -43.42 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -7.62 Total: 11.81 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -0.75 Total: 6.27 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.29 Total: -55.10 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.69 Total: -28.22 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.91 -8.51 -43.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690326992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.703 kcal (2) G-P(sol) polarization free energy of solvation -34.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds