Wall clock time and date at job start Fri Apr 10 2020 18:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00014 * 2 1 4 4 H 1.08997 * 109.47357 * 330.00441 * 3 2 1 5 5 C 1.53006 * 109.46751 * 90.00217 * 3 2 1 6 6 C 1.50702 * 109.47181 * 209.99884 * 3 2 1 7 7 O 1.21281 * 119.99951 * 355.00085 * 6 3 2 8 8 N 1.34774 * 119.99875 * 174.99877 * 6 3 2 9 9 C 1.46496 * 119.99819 * 179.97438 * 8 6 3 10 10 C 1.53005 * 109.46958 * 180.02562 * 9 8 6 11 11 N 1.46904 * 109.46773 * 180.02562 * 10 9 8 12 12 C 1.46902 * 110.99548 * 189.99743 * 11 10 9 13 13 C 1.50700 * 109.46805 * 162.31977 * 12 11 10 14 14 O 1.21293 * 120.00376 * 1.34211 * 13 12 11 15 15 N 1.34779 * 119.99821 * 181.34630 * 13 12 11 16 16 C 1.37102 * 119.99816 * 179.97438 * 15 13 12 17 17 H 1.08002 * 120.00277 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99755 * 179.97438 * 16 15 13 19 19 N 1.31405 * 120.00343 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99684 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47651 * 59.99948 * 20 18 16 22 22 H 1.48510 * 109.46879 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47247 * 299.99356 * 20 18 16 24 24 C 1.46897 * 111.00090 * 66.05103 * 11 10 9 25 25 C 1.53001 * 117.50420 * 127.70060 * 24 11 10 26 26 C 1.52996 * 117.50435 * 59.07243 * 24 11 10 27 27 H 1.08998 * 109.47069 * 59.99473 * 1 2 3 28 28 H 1.08996 * 109.47113 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46669 * 299.99723 * 1 2 3 30 30 H 1.08997 * 109.47007 * 60.00010 * 5 3 2 31 31 H 1.09004 * 109.47052 * 179.97438 * 5 3 2 32 32 H 1.09000 * 109.47008 * 299.99999 * 5 3 2 33 33 H 0.97003 * 119.99889 * 0.02562 * 8 6 3 34 34 H 1.09002 * 109.47564 * 300.00059 * 9 8 6 35 35 H 1.09004 * 109.47354 * 60.00652 * 9 8 6 36 36 H 1.08994 * 109.46987 * 300.00099 * 10 9 8 37 37 H 1.08997 * 109.47344 * 60.00706 * 10 9 8 38 38 H 1.08998 * 109.47755 * 282.31672 * 12 11 10 39 39 H 1.09004 * 109.47079 * 42.32583 * 12 11 10 40 40 H 0.96996 * 120.00343 * 0.02562 * 15 13 12 41 41 H 0.97009 * 120.00529 * 179.97438 * 19 18 16 42 42 H 1.09007 * 115.54609 * 273.40901 * 24 11 10 43 43 H 1.09000 * 117.49555 * 359.97438 * 25 24 11 44 44 H 1.09001 * 117.49998 * 145.01574 * 25 24 11 45 45 H 1.09000 * 117.50332 * 214.98208 * 26 24 11 46 46 H 1.09004 * 117.50020 * 359.97438 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5137 5 6 2.2177 1.7713 1.4426 6 6 3.3387 1.2639 -0.7104 7 8 3.7897 0.2045 -1.0914 8 7 4.0254 2.4040 -0.9224 9 6 5.3170 2.3635 -1.6124 10 6 5.8815 3.7814 -1.7218 11 7 7.1764 3.7409 -2.4143 12 6 7.8588 5.0391 -2.3309 13 6 9.3208 4.8594 -2.6494 14 8 9.7472 3.7626 -2.9432 15 7 10.1545 5.9176 -2.6078 16 6 11.4846 5.7540 -2.8971 17 1 11.8643 4.7774 -3.1588 18 6 12.3440 6.8451 -2.8548 19 7 11.8819 8.0337 -2.5380 20 14 14.1562 6.6223 -3.2497 21 1 14.3013 6.1049 -4.6340 22 1 14.8521 7.9292 -3.1347 23 1 14.7558 5.6561 -2.2946 24 6 7.0127 3.3212 -3.8125 25 6 7.6284 4.2112 -4.8941 26 6 6.1105 4.1751 -4.7055 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.8829 1.0773 1.9563 31 1 2.6615 2.7669 1.4426 32 1 1.2569 1.8013 1.9564 33 1 3.6648 3.2513 -0.6173 34 1 6.0106 1.7392 -1.0491 35 1 5.1826 1.9476 -2.6110 36 1 5.1881 4.4061 -2.2849 37 1 6.0161 4.1970 -0.7231 38 1 7.4134 5.7304 -3.0463 39 1 7.7533 5.4409 -1.3231 40 1 9.8136 6.7947 -2.3725 41 1 12.4819 8.7953 -2.5080 42 1 7.0166 2.2446 -3.9837 43 1 8.1546 5.1084 -4.5681 44 1 8.0377 3.7202 -5.7770 45 1 5.5211 3.6605 -5.4645 46 1 5.6379 5.0482 -4.2555 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691202908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:00 Heat of formation + Delta-G solvation = -99.520399 kcal Electronic energy + Delta-G solvation = -26121.255294 eV Core-core repulsion = 22239.626834 eV Total energy + Delta-G solvation = -3881.628460 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.19385 -40.80334 -39.03127 -38.53659 -36.29231 -35.84339 -34.42526 -33.21937 -32.67603 -30.45149 -27.93147 -27.66333 -26.10342 -25.09901 -23.93251 -23.06567 -21.62887 -21.40248 -20.41887 -19.68289 -18.50292 -18.09168 -17.98508 -17.61281 -16.92729 -16.68221 -16.46954 -16.02246 -15.94611 -15.63089 -15.48258 -15.16748 -14.89931 -14.69398 -14.21679 -14.14972 -13.67412 -13.51006 -13.45680 -13.29203 -13.14957 -13.01448 -12.74961 -12.69754 -12.40171 -12.29057 -12.14545 -12.10963 -12.07304 -11.60021 -11.45652 -11.09729 -11.02881 -10.53790 -10.26703 -10.14419 -9.94790 -9.16939 -8.42748 -5.90187 1.40534 1.41902 1.52142 1.55110 1.77220 2.12932 2.30737 2.72320 2.89252 3.10037 3.23866 3.41598 3.69669 3.74765 3.94313 3.96551 3.98632 4.04665 4.06307 4.15666 4.31897 4.40765 4.47363 4.51752 4.56947 4.57100 4.70453 4.72455 4.82176 4.88298 4.90644 4.96574 4.99370 5.15754 5.17973 5.22659 5.34887 5.44364 5.86244 6.07669 6.09553 6.14349 6.55675 6.66578 7.18845 7.22747 7.63133 8.20770 8.74442 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.029443 B = 0.002239 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.777493 B =12503.388563 C =12824.232969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.401 6.401 3 C 0.072 3.928 4 H 0.122 0.878 5 C -0.166 4.166 6 C 0.506 3.494 7 O -0.579 6.579 8 N -0.706 5.706 9 C 0.134 3.866 10 C 0.055 3.945 11 N -0.504 5.504 12 C 0.054 3.946 13 C 0.448 3.552 14 O -0.609 6.609 15 N -0.579 5.579 16 C -0.327 4.327 17 H 0.076 0.924 18 C -0.014 4.014 19 N -0.921 5.921 20 Si 0.988 3.012 21 H -0.274 1.274 22 H -0.271 1.271 23 H -0.274 1.274 24 C 0.029 3.971 25 C -0.194 4.194 26 C -0.184 4.184 27 H 0.055 0.945 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.420 0.580 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.114 0.886 40 H 0.395 0.605 41 H 0.276 0.724 42 H 0.111 0.889 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.112 0.888 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.944 -2.699 5.440 26.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.011 3.989 4 H 0.139 0.861 5 C -0.224 4.224 6 C 0.292 3.708 7 O -0.458 6.458 8 N -0.361 5.361 9 C 0.009 3.991 10 C -0.072 4.072 11 N -0.228 5.228 12 C -0.077 4.077 13 C 0.235 3.765 14 O -0.493 6.493 15 N -0.218 5.218 16 C -0.457 4.457 17 H 0.094 0.906 18 C -0.213 4.213 19 N -0.562 5.562 20 Si 0.813 3.187 21 H -0.199 1.199 22 H -0.195 1.195 23 H -0.200 1.200 24 C -0.079 4.079 25 C -0.232 4.232 26 C -0.222 4.222 27 H 0.074 0.926 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.258 0.742 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.132 0.868 40 H 0.229 0.771 41 H 0.085 0.915 42 H 0.128 0.872 43 H 0.097 0.903 44 H 0.105 0.895 45 H 0.131 0.869 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -24.837 -4.524 5.249 25.785 hybrid contribution 0.545 1.282 -0.529 1.490 sum -24.292 -3.243 4.720 24.957 Atomic orbital electron populations 1.23087 0.78579 1.04090 1.01590 1.88021 1.22012 1.26762 1.95195 1.22088 0.91834 0.87000 0.97930 0.86067 1.22248 1.04296 1.02569 0.93267 1.21152 0.87271 0.83489 0.78860 1.90724 1.70767 1.32004 1.52271 1.45620 1.21048 1.09896 1.59529 1.21001 0.83738 0.97440 0.96883 1.22269 0.89022 0.95571 1.00370 1.61288 1.20509 1.28064 1.12900 1.21824 0.90979 0.91124 1.03792 1.20675 0.89023 0.84436 0.82388 1.90518 1.78640 1.26736 1.53431 1.41900 1.07812 1.09906 1.62135 1.19549 0.84899 0.95938 1.45265 0.90636 1.25946 1.04088 0.94314 0.96978 1.69654 1.37844 0.99859 1.48885 0.85059 0.77355 0.77632 0.78703 1.19949 1.19523 1.19954 1.22579 1.03731 0.97092 0.84541 1.23148 0.96800 1.02268 1.00966 1.23508 0.92003 1.03210 1.03529 0.92635 0.88973 0.91678 0.93237 0.88504 0.89167 0.74230 0.93148 0.92457 0.91275 0.88179 0.90706 0.86793 0.77146 0.91460 0.87172 0.90271 0.89529 0.86926 0.87465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.82 113.37 1.23 1.46 16 2 O -0.40 -8.13 9.89 -129.99 -1.29 -9.41 16 3 C 0.07 1.04 3.13 29.85 0.09 1.14 16 4 H 0.12 0.85 7.79 -2.39 -0.02 0.83 16 5 C -0.17 -1.59 9.48 71.98 0.68 -0.90 16 6 C 0.51 11.37 7.18 87.66 0.63 12.00 16 7 O -0.58 -20.20 16.51 15.96 0.26 -19.94 16 8 N -0.71 -11.53 5.52 -463.06 -2.55 -14.09 16 9 C 0.13 3.02 5.67 86.38 0.49 3.51 16 10 C 0.05 1.09 4.96 86.30 0.43 1.51 16 11 N -0.50 -15.26 4.34 -875.51 -3.80 -19.06 16 12 C 0.05 1.74 5.00 85.56 0.43 2.17 16 13 C 0.45 20.81 5.84 87.66 0.51 21.32 16 14 O -0.61 -33.51 14.79 -3.07 -0.05 -33.56 16 15 N -0.58 -29.23 5.29 -306.98 -1.62 -30.85 16 16 C -0.33 -18.52 9.68 84.04 0.81 -17.71 16 17 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 18 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 19 N -0.92 -49.45 13.05 21.66 0.28 -49.16 16 20 Si 0.99 43.36 29.55 68.60 2.03 45.39 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 C 0.03 0.90 4.55 44.92 0.20 1.10 16 25 C -0.19 -6.38 8.48 30.60 0.26 -6.12 16 26 C -0.18 -4.26 9.26 30.59 0.28 -3.98 16 27 H 0.06 0.43 8.08 -2.39 -0.02 0.41 16 28 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.38 7.87 -2.39 -0.02 0.36 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 0.45 7.92 -2.38 -0.02 0.43 16 32 H 0.09 0.52 7.87 -2.39 -0.02 0.50 16 33 H 0.42 3.17 8.25 -92.71 -0.77 2.40 16 34 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.06 1.48 7.30 -2.39 -0.02 1.46 16 36 H 0.07 1.03 6.87 -2.39 -0.02 1.01 16 37 H 0.10 1.63 7.85 -2.39 -0.02 1.61 16 38 H 0.08 2.15 5.99 -2.39 -0.01 2.13 16 39 H 0.11 3.10 7.77 -2.38 -0.02 3.08 16 40 H 0.39 18.84 7.90 -92.71 -0.73 18.11 16 41 H 0.28 13.95 8.31 -92.70 -0.77 13.18 16 42 H 0.11 3.55 8.03 -2.38 -0.02 3.54 16 43 H 0.08 2.99 4.92 -2.39 -0.01 2.97 16 44 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 45 H 0.11 2.21 8.14 -2.39 -0.02 2.20 16 46 H 0.11 2.10 7.15 -2.39 -0.02 2.08 16 Total: -1.00 -80.95 377.55 -0.71 -81.66 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: -0.49 Total: 33.80 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 6.52 Total: 15.23 kcal Atomic # 7 Polarization: -105.46 SS G_CDS: -7.70 Total: -113.16 kcal Atomic # 8 Polarization: -61.84 SS G_CDS: -1.07 Total: -62.91 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -80.95 -0.71 -81.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691202908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.864 kcal (2) G-P(sol) polarization free energy of solvation -80.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds