Wall clock time and date at job start Fri Apr 10 2020 18:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42906 * 114.00050 * 2 1 4 4 H 1.08999 * 109.47143 * 330.00262 * 3 2 1 5 5 C 1.53000 * 109.46689 * 90.00135 * 3 2 1 6 6 C 1.50698 * 109.47238 * 209.99952 * 3 2 1 7 7 O 1.21276 * 120.00185 * 0.02562 * 6 3 2 8 8 N 1.34777 * 119.99830 * 180.02562 * 6 3 2 9 9 C 1.46498 * 120.00084 * 180.02562 * 8 6 3 10 10 C 1.52994 * 109.47472 * 179.97438 * 9 8 6 11 11 H 1.09004 * 112.84869 * 316.19393 * 10 9 8 12 12 C 1.53782 * 113.61379 * 87.49745 * 10 9 8 13 13 C 1.53962 * 87.11063 * 89.18901 * 12 10 9 14 14 H 1.08993 * 113.61598 * 270.84305 * 13 12 10 15 15 N 1.46900 * 113.66526 * 139.88647 * 13 12 10 16 16 C 1.46904 * 110.99843 * 107.55311 * 15 13 12 17 17 C 1.50700 * 109.47146 * 179.97438 * 16 15 13 18 18 O 1.21290 * 120.00195 * 0.02562 * 17 16 15 19 19 N 1.34773 * 119.99567 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99868 * 179.97438 * 19 17 16 21 21 H 1.08008 * 119.99432 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00330 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99513 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99982 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47088 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46640 * 120.00634 * 24 22 20 27 27 H 1.48490 * 109.47245 * 240.00333 * 24 22 20 28 28 C 1.53781 * 113.61652 * 184.99725 * 10 9 8 29 29 H 1.09002 * 109.47417 * 59.99378 * 1 2 3 30 30 H 1.08996 * 109.47102 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46989 * 299.99552 * 1 2 3 32 32 H 1.08999 * 109.47224 * 60.00177 * 5 3 2 33 33 H 1.08999 * 109.46973 * 179.97438 * 5 3 2 34 34 H 1.08995 * 109.47544 * 299.99985 * 5 3 2 35 35 H 0.96993 * 120.00140 * 359.97438 * 8 6 3 36 36 H 1.09001 * 109.47367 * 59.99555 * 9 8 6 37 37 H 1.09007 * 109.47028 * 299.99629 * 9 8 6 38 38 H 1.08997 * 113.61668 * 203.66451 * 12 10 9 39 39 H 1.08998 * 113.61674 * 334.48960 * 12 10 9 40 40 H 1.00904 * 111.00182 * 343.59801 * 15 13 12 41 41 H 1.09003 * 109.47079 * 300.00250 * 16 15 13 42 42 H 1.09005 * 109.46865 * 59.99631 * 16 15 13 43 43 H 0.97000 * 120.00490 * 0.02562 * 19 17 16 44 44 H 0.97004 * 119.99421 * 179.97438 * 23 22 20 45 45 H 1.09002 * 113.61445 * 25.43321 * 28 10 9 46 46 H 1.09002 * 113.61408 * 156.25051 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2176 1.7713 1.4425 6 6 3.3386 1.2639 -0.7104 7 8 3.7472 0.2194 -1.1717 8 7 4.0726 2.3876 -0.8330 9 6 5.3637 2.3474 -1.5241 10 6 5.9861 3.7451 -1.5240 11 1 5.2670 4.5286 -1.7632 12 6 6.8314 4.0429 -0.2743 13 6 8.0300 3.4534 -1.0402 14 1 8.1464 2.3778 -0.9078 15 7 9.2822 4.1936 -0.8356 16 6 10.2097 3.4346 0.0139 17 6 11.4801 4.2234 0.2004 18 8 11.6009 5.3112 -0.3224 19 7 12.4817 3.7206 0.9490 20 6 13.6377 4.4380 1.1183 21 1 13.7455 5.4063 0.6521 22 6 14.6702 3.9200 1.8906 23 7 14.5387 2.7421 2.4582 24 14 16.2455 4.8972 2.1206 25 1 16.1431 6.1820 1.3831 26 1 16.4513 5.1712 3.5655 27 1 17.3940 4.1153 1.5966 28 6 7.2908 3.8385 -2.3326 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 2.8829 1.0774 1.9563 33 1 2.6614 2.7669 1.4426 34 1 1.2569 1.8014 1.9564 35 1 3.7457 3.2231 -0.4644 36 1 5.2156 2.0161 -2.5519 37 1 6.0291 1.6530 -1.0109 38 1 6.9330 5.1065 -0.0592 39 1 6.5395 3.4602 0.5994 40 1 9.1027 5.1078 -0.4481 41 1 9.7481 3.2536 0.9846 42 1 10.4408 2.4814 -0.4619 43 1 12.3850 2.8509 1.3675 44 1 15.2596 2.3802 2.9971 45 1 7.3706 3.0899 -3.1208 46 1 7.5171 4.8462 -2.6813 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691488981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:07 Heat of formation + Delta-G solvation = -99.444930 kcal Electronic energy + Delta-G solvation = -25275.908109 eV Core-core repulsion = 21394.282921 eV Total energy + Delta-G solvation = -3881.625187 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.49216 -39.50786 -38.12707 -37.81987 -35.08914 -34.05798 -33.28489 -31.97934 -31.18674 -28.06580 -27.27068 -26.27276 -25.78397 -24.43143 -23.80480 -22.45597 -20.75486 -19.56782 -18.96990 -17.87074 -17.63206 -17.41066 -16.57342 -16.09050 -15.68790 -15.56618 -15.30976 -15.19992 -14.56153 -14.50275 -14.32787 -13.98530 -13.68839 -13.57992 -13.22537 -13.09971 -12.91656 -12.69524 -12.55134 -12.34816 -12.22172 -11.78686 -11.66307 -11.56603 -11.53696 -11.14683 -11.04413 -10.57109 -10.46587 -10.39644 -10.33490 -10.20832 -9.83634 -9.51175 -9.38174 -8.43363 -8.00553 -7.93772 -6.40835 -3.81674 2.27443 2.49647 3.17048 3.27513 3.34844 3.51671 3.92120 4.11104 4.19755 4.29693 4.37394 4.37652 4.43388 4.49169 4.62203 4.80746 4.85498 4.88812 5.01335 5.07637 5.17989 5.19283 5.22655 5.28226 5.30916 5.42916 5.57748 5.59904 5.67324 5.76521 5.81858 5.88638 5.98565 6.02949 6.13268 6.18474 6.32074 6.54488 7.13418 7.28708 7.56260 7.69010 7.89177 8.07675 8.62276 9.18886 9.55571 10.06915 10.76986 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.025877 B = 0.001878 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.770988 B =14906.819624 C =15503.024010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.069 3.931 4 H 0.087 0.913 5 C -0.172 4.172 6 C 0.511 3.489 7 O -0.518 6.518 8 N -0.726 5.726 9 C 0.138 3.862 10 C -0.126 4.126 11 H 0.084 0.916 12 C -0.166 4.166 13 C 0.067 3.933 14 H 0.096 0.904 15 N -0.657 5.657 16 C 0.049 3.951 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 C -0.116 4.116 29 H 0.043 0.957 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.400 0.600 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.351 0.649 41 H 0.043 0.957 42 H 0.086 0.914 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.071 0.929 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.553 -1.553 -3.141 28.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.008 3.992 4 H 0.105 0.895 5 C -0.230 4.230 6 C 0.296 3.704 7 O -0.392 6.392 8 N -0.380 5.380 9 C 0.015 3.985 10 C -0.145 4.145 11 H 0.102 0.898 12 C -0.205 4.205 13 C -0.045 4.045 14 H 0.114 0.886 15 N -0.288 5.288 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.469 6.469 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.155 4.155 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.234 0.766 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.171 0.829 41 H 0.061 0.939 42 H 0.104 0.896 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -27.599 -2.091 -4.296 28.009 hybrid contribution -0.046 0.588 1.562 1.669 sum -27.645 -1.503 -2.734 27.821 Atomic orbital electron populations 1.22893 0.80499 1.03394 1.00023 1.88065 1.19753 1.25034 1.94912 1.21938 0.93491 0.87008 0.96771 0.89518 1.22250 1.03585 1.02092 0.95024 1.20390 0.86042 0.83918 0.80043 1.90747 1.71218 1.30159 1.47075 1.45931 1.21377 1.11220 1.59477 1.21220 0.83356 0.96410 0.97562 1.22434 0.97109 0.96123 0.98879 0.89807 1.23828 0.97933 1.01821 0.96925 1.23137 0.87259 0.98226 0.95840 0.88629 1.60018 1.10932 1.05632 1.52207 1.21722 0.93280 0.97715 0.95601 1.19843 0.85510 0.88105 0.83942 1.90517 1.81853 1.22434 1.52057 1.41882 1.14044 1.19864 1.44301 1.19763 0.91475 1.02859 1.28783 0.87864 1.25271 0.99746 0.96356 0.96636 1.69626 1.34197 1.17063 1.33415 0.85794 0.80943 0.79608 0.77958 1.19219 1.20798 1.20736 1.23060 0.92375 1.03095 0.96930 0.93811 0.89039 0.93768 0.90878 0.90863 0.91127 0.76555 0.90963 0.90923 0.89519 0.91439 0.82871 0.93868 0.89620 0.77453 0.91928 0.91053 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.82 101.05 1.09 1.25 16 2 O -0.36 -3.54 9.88 -55.14 -0.54 -4.08 16 3 C 0.07 0.51 3.14 -27.88 -0.09 0.43 16 4 H 0.09 0.40 7.79 -51.93 -0.40 0.00 16 5 C -0.17 -0.93 9.42 37.16 0.35 -0.58 16 6 C 0.51 5.26 7.23 -10.99 -0.08 5.18 16 7 O -0.52 -7.93 16.50 -14.35 -0.24 -8.17 16 8 N -0.73 -5.46 5.45 -60.30 -0.33 -5.79 16 9 C 0.14 1.19 5.35 -4.05 -0.02 1.17 16 10 C -0.13 -0.98 3.94 -89.81 -0.35 -1.33 16 11 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 12 C -0.17 -1.52 7.24 -25.82 -0.19 -1.70 16 13 C 0.07 0.78 3.84 -66.80 -0.26 0.52 16 14 H 0.10 1.12 7.45 -51.93 -0.39 0.73 16 15 N -0.66 -10.39 6.24 -107.02 -0.67 -11.06 16 16 C 0.05 0.88 6.01 -4.97 -0.03 0.85 16 17 C 0.44 10.48 7.82 -10.99 -0.09 10.40 16 18 O -0.58 -15.96 15.78 5.55 0.09 -15.87 16 19 N -0.56 -14.45 5.29 -10.96 -0.06 -14.51 16 20 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 21 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 24 Si 0.93 21.17 29.55 -169.99 -5.02 16.14 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 C -0.12 -1.14 7.46 -25.92 -0.19 -1.34 16 29 H 0.04 0.19 8.09 -51.93 -0.42 -0.23 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.04 0.17 7.87 -51.93 -0.41 -0.24 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.26 7.56 -51.93 -0.39 -0.13 16 34 H 0.07 0.29 7.87 -51.93 -0.41 -0.12 16 35 H 0.40 1.82 7.89 -40.82 -0.32 1.50 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.74 7.40 -51.93 -0.38 0.36 16 38 H 0.09 0.80 7.82 -51.93 -0.41 0.39 16 39 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 40 H 0.35 5.67 7.90 -39.29 -0.31 5.36 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 1.43 8.13 -51.93 -0.42 1.00 16 43 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 44 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 46 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 384.72 15.07 5.80 5.80 Total: -1.00 -35.47 384.72 -7.82 -43.29 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -7.48 Total: 11.50 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -0.09 Total: 6.76 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.33 Total: -55.37 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.69 Total: -28.12 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.47 -7.82 -43.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691488981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.154 kcal (2) G-P(sol) polarization free energy of solvation -35.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds