Wall clock time and date at job start Fri Apr 10 2020 18:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42906 * 114.00050 * 2 1 4 4 H 1.08999 * 109.47143 * 330.00262 * 3 2 1 5 5 C 1.53000 * 109.46689 * 90.00135 * 3 2 1 6 6 C 1.50698 * 109.47238 * 209.99952 * 3 2 1 7 7 O 1.21276 * 120.00185 * 0.02562 * 6 3 2 8 8 N 1.34777 * 119.99830 * 180.02562 * 6 3 2 9 9 C 1.46498 * 120.00084 * 180.02562 * 8 6 3 10 10 C 1.52994 * 109.47472 * 179.97438 * 9 8 6 11 11 H 1.09004 * 112.84869 * 316.19393 * 10 9 8 12 12 C 1.53782 * 113.61379 * 87.49745 * 10 9 8 13 13 C 1.53962 * 87.11063 * 89.18901 * 12 10 9 14 14 H 1.08993 * 113.61598 * 270.84305 * 13 12 10 15 15 N 1.46900 * 113.66526 * 139.88647 * 13 12 10 16 16 C 1.46904 * 110.99843 * 107.55311 * 15 13 12 17 17 C 1.50700 * 109.47146 * 179.97438 * 16 15 13 18 18 O 1.21290 * 120.00195 * 0.02562 * 17 16 15 19 19 N 1.34773 * 119.99567 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99868 * 179.97438 * 19 17 16 21 21 H 1.08008 * 119.99432 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00330 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99513 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99982 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47088 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46640 * 120.00634 * 24 22 20 27 27 H 1.48490 * 109.47245 * 240.00333 * 24 22 20 28 28 C 1.53781 * 113.61652 * 184.99725 * 10 9 8 29 29 H 1.09002 * 109.47417 * 59.99378 * 1 2 3 30 30 H 1.08996 * 109.47102 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46989 * 299.99552 * 1 2 3 32 32 H 1.08999 * 109.47224 * 60.00177 * 5 3 2 33 33 H 1.08999 * 109.46973 * 179.97438 * 5 3 2 34 34 H 1.08995 * 109.47544 * 299.99985 * 5 3 2 35 35 H 0.96993 * 120.00140 * 359.97438 * 8 6 3 36 36 H 1.09001 * 109.47367 * 59.99555 * 9 8 6 37 37 H 1.09007 * 109.47028 * 299.99629 * 9 8 6 38 38 H 1.08997 * 113.61668 * 203.66451 * 12 10 9 39 39 H 1.08998 * 113.61674 * 334.48960 * 12 10 9 40 40 H 1.00904 * 111.00182 * 343.59801 * 15 13 12 41 41 H 1.09003 * 109.47079 * 300.00250 * 16 15 13 42 42 H 1.09005 * 109.46865 * 59.99631 * 16 15 13 43 43 H 0.97000 * 120.00490 * 0.02562 * 19 17 16 44 44 H 0.97004 * 119.99421 * 179.97438 * 23 22 20 45 45 H 1.09002 * 113.61445 * 25.43321 * 28 10 9 46 46 H 1.09002 * 113.61408 * 156.25051 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2176 1.7713 1.4425 6 6 3.3386 1.2639 -0.7104 7 8 3.7472 0.2194 -1.1717 8 7 4.0726 2.3876 -0.8330 9 6 5.3637 2.3474 -1.5241 10 6 5.9861 3.7451 -1.5240 11 1 5.2670 4.5286 -1.7632 12 6 6.8314 4.0429 -0.2743 13 6 8.0300 3.4534 -1.0402 14 1 8.1464 2.3778 -0.9078 15 7 9.2822 4.1936 -0.8356 16 6 10.2097 3.4346 0.0139 17 6 11.4801 4.2234 0.2004 18 8 11.6009 5.3112 -0.3224 19 7 12.4817 3.7206 0.9490 20 6 13.6377 4.4380 1.1183 21 1 13.7455 5.4063 0.6521 22 6 14.6702 3.9200 1.8906 23 7 14.5387 2.7421 2.4582 24 14 16.2455 4.8972 2.1206 25 1 16.1431 6.1820 1.3831 26 1 16.4513 5.1712 3.5655 27 1 17.3940 4.1153 1.5966 28 6 7.2908 3.8385 -2.3326 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 2.8829 1.0774 1.9563 33 1 2.6614 2.7669 1.4426 34 1 1.2569 1.8014 1.9564 35 1 3.7457 3.2231 -0.4644 36 1 5.2156 2.0161 -2.5519 37 1 6.0291 1.6530 -1.0109 38 1 6.9330 5.1065 -0.0592 39 1 6.5395 3.4602 0.5994 40 1 9.1027 5.1078 -0.4481 41 1 9.7481 3.2536 0.9846 42 1 10.4408 2.4814 -0.4619 43 1 12.3850 2.8509 1.3675 44 1 15.2596 2.3802 2.9971 45 1 7.3706 3.0899 -3.1208 46 1 7.5171 4.8462 -2.6813 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691488981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:07 Heat of formation + Delta-G solvation = -127.666796 kcal Electronic energy + Delta-G solvation = -25277.131900 eV Core-core repulsion = 21394.282921 eV Total energy + Delta-G solvation = -3882.848979 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.25792 -40.47157 -39.81917 -38.52732 -36.22891 -35.79642 -34.52404 -33.25327 -32.53674 -29.13760 -27.72960 -27.62141 -26.56009 -25.89654 -24.66143 -23.38271 -21.48111 -21.18912 -20.11175 -19.79635 -18.32904 -18.07065 -17.76954 -17.09366 -16.89869 -16.47326 -16.38451 -16.21762 -15.93921 -15.78649 -15.57432 -15.22319 -14.66791 -14.49598 -14.30009 -14.17124 -13.74614 -13.53130 -13.48860 -13.33515 -13.22959 -13.06426 -12.86404 -12.76700 -12.63691 -12.41811 -12.17421 -12.11428 -11.97160 -11.52461 -11.37343 -11.23019 -11.04557 -10.52948 -10.33371 -10.12840 -10.02605 -9.21443 -8.47552 -5.96646 1.36473 1.41684 1.52887 1.56253 1.87479 2.03989 2.28963 2.96496 3.01215 3.19607 3.49636 3.56018 3.63069 3.72340 3.84846 3.92945 4.03907 4.04464 4.29942 4.32578 4.45064 4.45584 4.51051 4.54989 4.61352 4.66971 4.69807 4.78530 4.84450 4.86622 4.91691 5.04235 5.13695 5.20136 5.21918 5.34233 5.40503 5.45556 5.93250 6.07201 6.17289 6.46723 6.53896 6.59013 7.11538 7.20544 7.55102 8.10058 8.70095 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.025877 B = 0.001878 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.770988 B =14906.819624 C =15503.024010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.401 6.401 3 C 0.070 3.930 4 H 0.120 0.880 5 C -0.167 4.167 6 C 0.505 3.495 7 O -0.579 6.579 8 N -0.708 5.708 9 C 0.139 3.861 10 C -0.101 4.101 11 H 0.110 0.890 12 C -0.155 4.155 13 C 0.053 3.947 14 H 0.095 0.905 15 N -0.671 5.671 16 C 0.065 3.935 17 C 0.437 3.563 18 O -0.623 6.623 19 N -0.574 5.574 20 C -0.335 4.335 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.995 3.005 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.271 1.271 28 C -0.116 4.116 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.418 0.582 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.347 0.653 41 H 0.065 0.935 42 H 0.098 0.902 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.071 0.929 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.184 -0.606 -2.565 30.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.319 6.319 3 C 0.009 3.991 4 H 0.137 0.863 5 C -0.224 4.224 6 C 0.292 3.708 7 O -0.457 6.457 8 N -0.362 5.362 9 C 0.015 3.985 10 C -0.121 4.121 11 H 0.128 0.872 12 C -0.194 4.194 13 C -0.057 4.057 14 H 0.113 0.887 15 N -0.302 5.302 16 C -0.068 4.068 17 C 0.225 3.775 18 O -0.510 6.510 19 N -0.211 5.211 20 C -0.464 4.464 21 H 0.098 0.902 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.819 3.181 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.154 4.154 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.256 0.744 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.167 0.833 41 H 0.083 0.917 42 H 0.116 0.884 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -29.270 -1.127 -3.701 29.524 hybrid contribution 0.411 0.285 1.344 1.434 sum -28.859 -0.842 -2.357 28.967 Atomic orbital electron populations 1.23080 0.78628 1.04093 1.01526 1.88015 1.21978 1.26751 1.95184 1.22105 0.92184 0.86971 0.97863 0.86252 1.22252 1.04243 1.02510 0.93444 1.21084 0.87048 0.83426 0.79258 1.90716 1.72799 1.32402 1.49831 1.45781 1.20540 1.11478 1.58430 1.21116 0.83654 0.96597 0.97098 1.22231 0.96580 0.96061 0.97187 0.87178 1.23738 0.96391 1.01928 0.97350 1.23354 0.86398 0.97987 0.97977 0.88733 1.60047 1.12707 1.05745 1.51741 1.21566 0.90775 0.97071 0.97375 1.20906 0.86676 0.87855 0.82063 1.90482 1.82907 1.24390 1.53174 1.41962 1.14137 1.19961 1.45058 1.19731 0.93399 1.02851 1.30430 0.90236 1.26076 1.02353 0.97282 0.95675 1.69688 1.35295 1.17874 1.33357 0.84840 0.77047 0.77976 0.78280 1.19705 1.19513 1.19669 1.23046 0.93200 1.02855 0.96344 0.92651 0.88948 0.91797 0.93140 0.88600 0.89397 0.74411 0.91642 0.92669 0.89005 0.90975 0.83309 0.91711 0.88372 0.77032 0.91297 0.91063 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.82 113.37 1.23 1.44 16 2 O -0.40 -7.60 9.88 -129.94 -1.28 -8.88 16 3 C 0.07 0.90 3.14 29.85 0.09 1.00 16 4 H 0.12 0.72 7.79 -2.39 -0.02 0.70 16 5 C -0.17 -1.41 9.42 71.98 0.68 -0.73 16 6 C 0.51 9.97 7.23 87.66 0.63 10.61 16 7 O -0.58 -18.18 16.50 16.02 0.26 -17.92 16 8 N -0.71 -9.23 5.45 -463.07 -2.52 -11.75 16 9 C 0.14 2.22 5.35 86.38 0.46 2.68 16 10 C -0.10 -1.31 3.94 -10.27 -0.04 -1.35 16 11 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 12 C -0.15 -2.47 7.24 31.18 0.23 -2.25 16 13 C 0.05 1.17 3.84 45.51 0.17 1.34 16 14 H 0.09 2.11 7.45 -2.39 -0.02 2.10 16 15 N -0.67 -20.78 6.24 -492.51 -3.08 -23.86 16 16 C 0.06 2.25 6.01 85.56 0.51 2.76 16 17 C 0.44 21.11 7.82 87.66 0.69 21.80 16 18 O -0.62 -34.83 15.78 -3.06 -0.05 -34.87 16 19 N -0.57 -29.94 5.29 -306.98 -1.62 -31.57 16 20 C -0.33 -19.25 9.68 84.04 0.81 -18.43 16 21 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 22 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 23 N -0.92 -50.29 13.05 21.66 0.28 -50.01 16 24 Si 1.00 43.25 29.55 68.60 2.03 45.28 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 26 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 28 C -0.12 -2.11 7.46 31.12 0.23 -1.87 16 29 H 0.05 0.38 8.09 -2.39 -0.02 0.36 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.34 7.87 -2.39 -0.02 0.32 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.10 0.34 7.56 -2.39 -0.02 0.32 16 34 H 0.09 0.45 7.87 -2.39 -0.02 0.43 16 35 H 0.42 2.38 7.89 -92.71 -0.73 1.65 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.05 1.10 7.40 -2.38 -0.02 1.09 16 38 H 0.09 1.44 7.82 -2.39 -0.02 1.42 16 39 H 0.07 1.12 8.10 -2.39 -0.02 1.10 16 40 H 0.35 11.04 7.90 -89.69 -0.71 10.33 16 41 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.10 3.19 8.13 -2.38 -0.02 3.17 16 43 H 0.40 19.67 7.90 -92.71 -0.73 18.94 16 44 H 0.28 14.13 8.31 -92.70 -0.77 13.36 16 45 H 0.07 1.30 8.10 -2.39 -0.02 1.28 16 46 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -79.60 384.72 -0.98 -80.57 By element: Atomic # 1 Polarization: 37.48 SS G_CDS: -1.16 Total: 36.31 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: 6.17 Total: 16.69 kcal Atomic # 7 Polarization: -110.25 SS G_CDS: -6.94 Total: -117.18 kcal Atomic # 8 Polarization: -60.61 SS G_CDS: -1.07 Total: -61.68 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -79.60 -0.98 -80.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691488981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.094 kcal (2) G-P(sol) polarization free energy of solvation -79.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds