Wall clock time and date at job start Fri Apr 10 2020 18:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 O 1.42898 * 109.47113 * 239.99870 * 2 1 3 5 5 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 6 6 N 1.46905 * 109.47150 * 184.99872 * 5 2 1 7 7 C 1.46897 * 110.99705 * 66.04695 * 6 5 2 8 8 C 1.53243 * 109.34031 * 172.74628 * 7 6 5 9 9 N 1.47080 * 108.51946 * 53.82929 * 8 7 6 10 10 C 1.34772 * 120.87892 * 128.83868 * 9 8 7 11 11 O 1.21289 * 119.99906 * 180.02562 * 10 9 8 12 12 C 1.50704 * 120.00160 * 359.97438 * 10 9 8 13 13 H 1.09000 * 109.47194 * 319.99897 * 12 10 9 14 14 N 1.46897 * 109.47178 * 200.00158 * 12 10 9 15 15 C 1.53004 * 109.46735 * 80.00084 * 12 10 9 16 16 C 1.53000 * 109.46666 * 184.99841 * 15 12 10 17 17 C 1.50703 * 109.47034 * 180.02562 * 16 15 12 18 18 H 1.07999 * 119.99756 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99855 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00608 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99727 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47163 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47312 * 119.99680 * 21 19 17 24 24 H 1.48501 * 109.46769 * 239.99486 * 21 19 17 25 25 C 1.47082 * 118.23796 * 308.81828 * 9 8 7 26 26 C 1.46894 * 111.00296 * 301.74709 * 6 5 2 27 27 H 1.09005 * 109.49480 * 67.29008 * 26 6 5 28 28 C 1.53009 * 109.49077 * 307.21278 * 26 6 5 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 0.96701 * 113.99881 * 60.00537 * 4 2 1 33 33 H 1.09001 * 109.47630 * 305.00128 * 5 2 1 34 34 H 1.09004 * 109.47346 * 65.00258 * 5 2 1 35 35 H 1.08997 * 109.49632 * 292.71059 * 7 6 5 36 36 H 1.09003 * 109.49479 * 52.78552 * 7 6 5 37 37 H 1.08996 * 109.62735 * 173.54128 * 8 7 6 38 38 H 1.09001 * 109.62552 * 293.92619 * 8 7 6 39 39 H 1.00903 * 111.00321 * 176.04993 * 14 12 10 40 40 H 1.00902 * 111.00107 * 300.00147 * 14 12 10 41 41 H 1.08997 * 109.47492 * 304.99806 * 15 12 10 42 42 H 1.08997 * 109.47102 * 65.00461 * 15 12 10 43 43 H 1.09003 * 109.47553 * 300.00189 * 16 15 12 44 44 H 1.09008 * 109.47229 * 60.00216 * 16 15 12 45 45 H 0.96991 * 120.00287 * 180.02562 * 20 19 17 46 46 H 1.08998 * 109.62608 * 170.89767 * 25 9 8 47 47 H 1.08998 * 109.62344 * 291.27975 * 25 9 8 48 48 H 1.08994 * 109.47109 * 60.00164 * 28 26 6 49 49 H 1.09007 * 109.46719 * 179.97438 * 28 26 6 50 50 H 1.08993 * 109.47305 * 299.99608 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 7 3.5040 -0.6176 1.3112 7 6 3.9250 0.7749 1.5152 8 6 5.4380 0.8177 1.7548 9 7 6.1067 0.1221 0.6448 10 6 7.1161 0.7069 -0.0300 11 8 7.6560 0.1188 -0.9432 12 6 7.5734 2.0919 0.3492 13 1 6.7064 2.7088 0.5856 14 7 8.3082 2.6896 -0.7736 15 6 8.4894 2.0094 1.5720 16 6 8.8533 3.4223 2.0327 17 6 9.7560 3.3412 3.2367 18 1 10.0412 2.3782 3.6339 19 6 10.2169 4.4964 3.8319 20 7 9.8692 5.6690 3.3486 21 14 11.3364 4.3958 5.3239 22 1 11.5765 2.9712 5.6674 23 1 12.6305 5.0564 5.0172 24 1 10.6916 5.0799 6.4735 25 6 5.6447 -1.2287 0.2909 26 6 4.1237 -1.1909 0.1091 27 1 3.8760 -0.5761 -0.7563 28 6 3.5999 -2.6122 -0.1070 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.7211 -0.2701 -1.9979 33 1 1.6053 -0.2617 2.1370 34 1 1.7516 -1.7715 1.2056 35 1 3.6801 1.3623 0.6304 36 1 3.4078 1.1881 2.3812 37 1 5.7735 1.8541 1.7927 38 1 5.6737 0.3219 2.6965 39 1 8.5700 3.6422 -0.5683 40 1 9.1172 2.1357 -1.0121 41 1 7.9741 1.4861 2.3774 42 1 9.3980 1.4676 1.3095 43 1 9.3686 3.9457 1.2273 44 1 7.9447 3.9643 2.2952 45 1 10.1937 6.4816 3.7670 46 1 6.1170 -1.5453 -0.6390 47 1 5.9038 -1.9248 1.0887 48 1 2.5177 -2.5852 -0.2340 49 1 4.0596 -3.0371 -0.9994 50 1 3.8490 -3.2267 0.7581 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424143899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:16 Heat of formation + Delta-G solvation = -81.646988 kcal Electronic energy + Delta-G solvation = -27935.528749 eV Core-core repulsion = 24190.508433 eV Total energy + Delta-G solvation = -3745.020316 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.47802 -39.09367 -36.96489 -35.50191 -34.47343 -32.97626 -32.70162 -31.39333 -29.87824 -28.42475 -27.64326 -26.03434 -24.79463 -23.40553 -22.87068 -22.07673 -20.55689 -19.63467 -18.64322 -17.82785 -17.43318 -16.37504 -16.09685 -15.83080 -15.58988 -15.12331 -14.91692 -14.56721 -14.40272 -14.10635 -13.97176 -13.67331 -13.30207 -13.20921 -13.03384 -12.68843 -12.59204 -12.28566 -12.17092 -12.09965 -12.03583 -11.75710 -11.65154 -11.42343 -11.24762 -11.10599 -11.02220 -10.97636 -10.86799 -10.64828 -10.05757 -9.97455 -9.83667 -9.24320 -9.13379 -8.67119 -8.44017 -8.20724 -8.14401 -6.08422 -4.11232 2.98147 3.11143 3.26508 3.34626 3.38954 3.65594 3.94099 4.39829 4.45442 4.64071 4.72286 4.72870 4.87559 4.93253 5.04826 5.16666 5.21806 5.27960 5.29706 5.29922 5.38847 5.40461 5.52706 5.53688 5.57696 5.64617 5.68400 5.74822 5.78610 5.85404 5.93013 5.95772 6.13236 6.28751 6.30994 6.53177 6.63256 6.88522 6.88977 6.97702 7.27144 7.44800 7.52634 7.61443 7.69640 7.88986 7.92915 8.31872 8.50345 8.94984 9.53801 11.02507 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.019094 B = 0.003005 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.056363 B = 9315.623903 C = 9793.018043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.061 3.939 3 H 0.055 0.945 4 O -0.552 6.552 5 C 0.060 3.940 6 N -0.530 5.530 7 C 0.038 3.962 8 C 0.110 3.890 9 N -0.615 5.615 10 C 0.527 3.473 11 O -0.541 6.541 12 C 0.075 3.925 13 H 0.095 0.905 14 N -0.831 5.831 15 C -0.138 4.138 16 C 0.025 3.975 17 C -0.522 4.522 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.118 3.882 26 C 0.070 3.930 27 H 0.076 0.924 28 C -0.135 4.135 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.369 0.631 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.039 0.961 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.353 0.647 40 H 0.345 0.655 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.017 0.983 44 H 0.018 0.982 45 H 0.261 0.739 46 H 0.090 0.910 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.055 0.945 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.869 -11.794 -5.886 23.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.000 4.000 3 H 0.073 0.927 4 O -0.359 6.359 5 C -0.069 4.069 6 N -0.254 5.254 7 C -0.091 4.091 8 C -0.014 4.014 9 N -0.350 5.350 10 C 0.316 3.684 11 O -0.417 6.417 12 C -0.040 4.040 13 H 0.113 0.887 14 N -0.363 5.363 15 C -0.178 4.178 16 C -0.012 4.012 17 C -0.560 4.560 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.209 1.209 25 C -0.005 4.005 26 C -0.038 4.038 27 H 0.094 0.906 28 C -0.193 4.193 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.217 0.783 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.057 0.943 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.168 0.832 40 H 0.159 0.841 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.070 0.930 46 H 0.108 0.892 47 H 0.084 0.916 48 H 0.089 0.911 49 H 0.074 0.926 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.746 -12.692 -5.923 24.209 hybrid contribution 0.708 1.104 0.627 1.453 sum -19.038 -11.588 -5.297 22.908 Atomic orbital electron populations 1.22443 0.96323 1.02766 1.02471 1.22631 0.93284 0.96420 0.87650 0.92740 1.86777 1.75795 1.57445 1.15834 1.22408 0.87857 1.01857 0.94732 1.62136 1.06523 1.17872 1.38821 1.22541 0.96246 0.89218 1.01081 1.21907 0.90775 0.98712 0.89996 1.48108 1.35228 1.17151 1.34485 1.20875 0.78454 0.88218 0.80834 1.90615 1.55686 1.65551 1.29879 1.21499 0.98694 0.91826 0.92021 0.88732 1.58757 1.31396 1.07370 1.38783 1.22394 0.97916 1.02394 0.95070 1.19101 0.96693 0.89177 0.96233 1.21220 1.29482 0.92474 1.12829 0.92656 1.25008 0.96427 0.95455 0.97423 1.69954 1.45129 0.97276 1.40887 0.86537 0.80561 0.78169 0.82767 1.19734 1.20971 1.20950 1.21761 0.93289 0.83605 1.01839 1.22176 0.92751 0.97131 0.91761 0.90605 1.21773 1.01948 0.94656 1.00901 0.91752 0.91590 0.92498 0.78333 0.89532 0.89477 0.94260 0.89541 0.88539 0.90379 0.83158 0.84141 0.92411 0.92694 0.96437 0.96400 0.92959 0.89163 0.91564 0.91133 0.92615 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.00 9.53 37.16 0.35 -0.65 16 2 C 0.06 0.44 3.30 -26.73 -0.09 0.35 16 3 H 0.05 0.44 6.49 -51.93 -0.34 0.10 16 4 O -0.55 -4.32 8.06 -35.23 -0.28 -4.61 16 5 C 0.06 0.48 4.78 -3.82 -0.02 0.46 16 6 N -0.53 -5.41 4.68 -226.34 -1.06 -6.47 16 7 C 0.04 0.39 5.17 -3.70 -0.02 0.37 16 8 C 0.11 1.38 5.73 -3.60 -0.02 1.36 16 9 N -0.62 -9.10 3.01 -172.46 -0.52 -9.62 16 10 C 0.53 9.40 6.96 -10.99 -0.08 9.32 16 11 O -0.54 -11.19 15.70 5.55 0.09 -11.10 16 12 C 0.07 1.32 2.36 -68.86 -0.16 1.15 16 13 H 0.09 1.58 6.52 -51.93 -0.34 1.24 16 14 N -0.83 -14.82 8.93 -5.65 -0.05 -14.87 16 15 C -0.14 -2.76 4.58 -26.73 -0.12 -2.88 16 16 C 0.03 0.61 4.74 -27.88 -0.13 0.48 16 17 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -25.93 13.29 55.43 0.74 -25.20 16 21 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.12 1.59 5.88 -3.60 -0.02 1.57 16 26 C 0.07 0.79 1.90 -67.59 -0.13 0.66 16 27 H 0.08 0.96 5.70 -51.93 -0.30 0.66 16 28 C -0.13 -1.31 8.13 37.16 0.30 -1.01 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.37 1.83 9.08 45.56 0.41 2.25 16 33 H 0.09 0.59 8.05 -51.93 -0.42 0.17 16 34 H 0.09 0.70 6.31 -51.93 -0.33 0.38 16 35 H 0.04 0.43 6.73 -51.93 -0.35 0.08 16 36 H 0.09 0.75 8.04 -51.93 -0.42 0.34 16 37 H 0.10 1.25 5.33 -51.93 -0.28 0.98 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.35 6.24 7.55 -39.29 -0.30 5.94 16 40 H 0.35 6.27 8.58 -39.29 -0.34 5.93 16 41 H 0.06 1.12 7.25 -51.93 -0.38 0.74 16 42 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 44 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 45 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.09 1.34 7.06 -51.93 -0.37 0.97 16 47 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.07 0.66 5.07 -51.93 -0.26 0.40 16 49 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 376.12 15.07 5.67 5.67 Total: -1.00 -31.94 376.12 -8.67 -40.62 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -7.69 Total: 11.25 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -0.54 Total: -1.93 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.89 Total: -56.16 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.20 Total: -15.71 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.94 -8.67 -40.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424143899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.030 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds