Wall clock time and date at job start Fri Apr 10 2020 18:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47504 * 2 1 4 4 N 1.46497 * 109.47199 * 239.99263 * 2 1 3 5 5 C 1.34781 * 119.99716 * 85.00629 * 4 2 1 6 6 O 1.21286 * 119.99983 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00160 * 179.97438 * 5 4 2 8 8 H 1.09002 * 109.46753 * 39.99710 * 7 5 4 9 9 N 1.46898 * 109.47192 * 159.99754 * 7 5 4 10 10 C 1.52992 * 109.47482 * 279.99980 * 7 5 4 11 11 C 1.52997 * 109.47482 * 174.99860 * 10 7 5 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 C 1.53007 * 109.47006 * 119.99677 * 2 1 3 21 21 H 1.08995 * 109.46883 * 185.00139 * 20 2 1 22 22 C 1.52999 * 109.47076 * 64.99842 * 20 2 1 23 23 N 1.46899 * 109.46767 * 305.00345 * 20 2 1 24 24 C 1.47021 * 110.99823 * 303.62941 * 23 20 2 25 25 C 1.53103 * 109.25374 * 177.60978 * 24 23 20 26 26 O 1.43013 * 109.25904 * 56.85292 * 25 24 23 27 27 C 1.43015 * 113.74034 * 301.33018 * 26 25 24 28 28 C 1.47022 * 110.99604 * 180.02562 * 23 20 2 29 29 H 1.08998 * 109.47240 * 300.00718 * 1 2 3 30 30 H 1.08998 * 109.46851 * 60.00187 * 1 2 3 31 31 H 1.09002 * 109.47039 * 179.97438 * 1 2 3 32 32 H 0.96994 * 120.00502 * 264.99762 * 4 2 1 33 33 H 1.00906 * 111.00043 * 296.04677 * 9 7 5 34 34 H 1.00899 * 111.00057 * 59.99855 * 9 7 5 35 35 H 1.09002 * 109.47103 * 54.99613 * 10 7 5 36 36 H 1.08998 * 109.46862 * 295.00425 * 10 7 5 37 37 H 1.09002 * 109.47153 * 59.99783 * 11 10 7 38 38 H 1.09001 * 109.46832 * 299.99974 * 11 10 7 39 39 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 40 40 H 1.08998 * 109.47269 * 300.00389 * 22 20 2 41 41 H 1.09002 * 109.47061 * 60.00135 * 22 20 2 42 42 H 1.08998 * 109.47258 * 180.02562 * 22 20 2 43 43 H 1.08993 * 109.50661 * 297.54257 * 24 23 20 44 44 H 1.08994 * 109.50415 * 57.67834 * 24 23 20 45 45 H 1.08994 * 109.50943 * 296.91363 * 25 24 23 46 46 H 1.09005 * 109.53434 * 176.80610 * 25 24 23 47 47 H 1.09005 * 109.50431 * 298.73527 * 27 26 25 48 48 H 1.09002 * 109.54713 * 178.63135 * 27 26 25 49 49 H 1.09000 * 109.50376 * 302.31839 * 28 23 20 50 50 H 1.08997 * 109.50952 * 62.41232 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8584 1.1583 -2.4117 7 6 2.6501 -0.7288 -3.5874 8 1 2.2158 -1.7275 -3.6332 9 7 2.2615 0.0297 -4.7839 10 6 4.1749 -0.8381 -3.5258 11 6 4.6751 -1.6669 -4.7105 12 6 6.1771 -1.7741 -4.6501 13 1 6.7205 -1.2989 -3.8468 14 6 6.8574 -2.4797 -5.6198 15 7 6.1956 -3.0587 -6.5977 16 14 8.7191 -2.6130 -5.5445 17 1 9.1172 -3.2729 -4.2751 18 1 9.2046 -3.4174 -6.6945 19 1 9.3156 -1.2544 -5.6045 20 6 2.0400 -0.7212 1.2493 21 1 3.1263 -0.6443 1.2952 22 6 1.6352 -2.1954 1.1882 23 7 1.4542 -0.1019 2.4456 24 6 1.7507 1.3374 2.4927 25 6 1.0733 1.9526 3.7201 26 8 1.5170 1.2697 4.8957 27 6 1.2437 -0.1341 4.8838 28 6 1.9233 -0.7702 3.6683 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6318 -1.1524 33 1 1.2577 0.0608 -4.8821 34 1 2.6520 0.9599 -4.7650 35 1 4.4670 -1.3227 -2.5941 36 1 4.6126 0.1592 -3.5693 37 1 4.3829 -1.1824 -5.6421 38 1 4.2373 -2.6642 -4.6668 39 1 6.6743 -3.5548 -7.2801 40 1 0.5489 -2.2723 1.1422 41 1 2.0698 -2.6550 0.3005 42 1 1.9981 -2.7091 2.0784 43 1 2.8286 1.4848 2.5597 44 1 1.3725 1.8166 1.5897 45 1 -0.0081 1.8526 3.6274 46 1 1.3365 3.0080 3.7910 47 1 0.1672 -0.2948 4.8249 48 1 1.6301 -0.5886 5.7961 49 1 1.6710 -1.8296 3.6236 50 1 3.0040 -0.6566 3.7534 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424157105.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:32 Heat of formation + Delta-G solvation = -85.636616 kcal Electronic energy + Delta-G solvation = -27242.779403 eV Core-core repulsion = 23497.586084 eV Total energy + Delta-G solvation = -3745.193319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.54737 -39.62496 -37.57242 -35.27127 -34.72453 -32.80789 -31.80606 -31.48525 -30.10140 -29.47972 -27.04014 -26.43809 -24.94491 -24.01739 -23.17077 -21.25610 -20.69178 -19.88712 -19.70279 -17.48245 -16.98063 -16.50678 -16.26392 -16.10661 -15.77775 -15.40229 -15.33945 -15.08452 -14.63285 -14.45437 -14.21905 -14.18675 -13.98106 -13.45076 -13.01396 -12.77011 -12.45418 -12.31485 -12.29420 -12.09825 -11.99506 -11.88214 -11.74284 -11.57222 -11.32880 -10.89137 -10.85926 -10.70938 -10.66574 -10.58261 -10.13115 -10.03452 -9.80930 -9.38513 -9.10813 -9.01534 -8.77746 -8.35849 -8.21098 -5.95002 -3.97310 2.76804 3.02781 3.34751 3.39505 3.41730 3.46729 3.57656 4.27547 4.48674 4.50826 4.54765 4.62720 4.77317 4.81639 4.87483 4.91930 4.95358 5.08116 5.12504 5.24627 5.25446 5.29776 5.34540 5.39738 5.40444 5.50120 5.52730 5.56640 5.62421 5.69327 5.81211 5.82763 5.93231 6.16419 6.39974 6.44989 6.54691 6.60442 6.64341 6.76200 7.07139 7.37112 7.59370 7.74463 7.79422 7.94859 8.11935 8.31941 8.47076 9.10505 9.65804 11.15860 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.017221 B = 0.002686 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.491502 B =10423.140192 C =11283.461576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.145 3.855 3 H 0.084 0.916 4 N -0.726 5.726 5 C 0.485 3.515 6 O -0.554 6.554 7 C 0.078 3.922 8 H 0.097 0.903 9 N -0.807 5.807 10 C -0.095 4.095 11 C 0.032 3.968 12 C -0.524 4.524 13 H 0.051 0.949 14 C 0.058 3.942 15 N -0.892 5.892 16 Si 0.889 3.111 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.278 1.278 20 C 0.074 3.926 21 H 0.050 0.950 22 C -0.152 4.152 23 N -0.524 5.524 24 C 0.009 3.991 25 C 0.066 3.934 26 O -0.387 6.387 27 C 0.065 3.935 28 C 0.014 3.986 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.401 0.599 33 H 0.334 0.666 34 H 0.348 0.652 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.035 0.965 38 H 0.013 0.987 39 H 0.260 0.740 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.045 0.955 44 H 0.092 0.908 45 H 0.060 0.940 46 H 0.098 0.902 47 H 0.059 0.941 48 H 0.097 0.903 49 H 0.091 0.909 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.005 4.166 21.546 26.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.040 3.960 3 H 0.102 0.898 4 N -0.381 5.381 5 C 0.271 3.729 6 O -0.431 6.431 7 C -0.038 4.038 8 H 0.115 0.885 9 N -0.334 5.334 10 C -0.133 4.133 11 C -0.005 4.005 12 C -0.562 4.562 13 H 0.069 0.931 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.717 3.283 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.035 4.035 21 H 0.068 0.932 22 C -0.209 4.209 23 N -0.250 5.250 24 C -0.119 4.119 25 C -0.011 4.011 26 O -0.305 6.305 27 C -0.012 4.012 28 C -0.114 4.114 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.237 0.763 33 H 0.145 0.855 34 H 0.162 0.838 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.031 0.969 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.111 0.889 45 H 0.078 0.922 46 H 0.116 0.884 47 H 0.078 0.922 48 H 0.115 0.885 49 H 0.109 0.891 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -14.197 4.384 21.032 25.751 hybrid contribution 1.506 -0.006 0.535 1.599 sum -12.691 4.378 21.567 25.404 Atomic orbital electron populations 1.22075 0.94508 1.02260 1.02160 1.20860 0.94971 0.96791 0.83384 0.89797 1.46327 1.67829 1.14326 1.09589 1.22750 0.76124 0.88000 0.86020 1.90637 1.50763 1.16368 1.85379 1.21836 0.99839 0.97459 0.84637 0.88492 1.58997 1.15293 1.22262 1.36886 1.21648 0.88367 1.01562 1.01722 1.19008 0.94738 0.94098 0.92688 1.21241 0.92534 1.32623 1.09807 0.93083 1.24988 0.98084 0.95723 0.95496 1.69961 1.35399 1.34559 1.13242 0.86714 0.86126 0.78066 0.77385 1.20381 1.21309 1.20318 1.21839 0.97012 0.95152 0.89509 0.93222 1.21971 1.02959 0.93871 1.02116 1.62249 1.58707 1.02504 1.01535 1.22914 0.99697 0.89067 1.00252 1.22662 0.98502 0.96327 0.83657 1.87991 1.82138 1.20377 1.40037 1.22658 0.99808 0.81332 0.97424 1.22864 0.98412 0.99892 0.90245 0.90911 0.92824 0.92368 0.76285 0.85466 0.83844 0.92959 0.92893 0.94659 0.96894 0.93023 0.90966 0.91679 0.92033 0.93688 0.88943 0.92184 0.88396 0.92226 0.88496 0.89066 0.93802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.90 37.16 0.33 -1.20 16 2 C 0.15 1.57 1.87 -67.93 -0.13 1.45 16 3 H 0.08 1.08 6.03 -51.93 -0.31 0.77 16 4 N -0.73 -8.78 4.99 -53.80 -0.27 -9.05 16 5 C 0.49 7.45 7.03 -10.98 -0.08 7.37 16 6 O -0.55 -9.95 15.91 5.55 0.09 -9.87 16 7 C 0.08 1.29 3.15 -68.87 -0.22 1.07 16 8 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 9 N -0.81 -13.53 8.44 -5.66 -0.05 -13.58 16 10 C -0.09 -1.89 4.78 -26.74 -0.13 -2.02 16 11 C 0.03 0.81 4.86 -27.88 -0.14 0.67 16 12 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 13 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 16 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.07 0.67 2.10 -67.71 -0.14 0.52 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 22 C -0.15 -1.15 8.48 37.16 0.32 -0.84 16 23 N -0.52 -4.38 3.69 -226.32 -0.84 -5.22 16 24 C 0.01 0.08 4.96 -3.71 -0.02 0.06 16 25 C 0.07 0.51 7.01 37.21 0.26 0.77 16 26 O -0.39 -3.64 10.83 -35.23 -0.38 -4.03 16 27 C 0.06 0.46 7.01 37.21 0.26 0.72 16 28 C 0.01 0.10 5.34 -3.71 -0.02 0.08 16 29 H 0.07 0.68 6.93 -51.93 -0.36 0.32 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.55 6.57 -51.93 -0.34 0.20 16 32 H 0.40 4.21 6.58 -40.82 -0.27 3.94 16 33 H 0.33 4.86 9.06 -39.29 -0.36 4.50 16 34 H 0.35 5.94 8.58 -39.29 -0.34 5.60 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.04 0.97 7.75 -51.93 -0.40 0.57 16 38 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.07 0.55 6.57 -51.93 -0.34 0.20 16 41 H 0.06 0.49 6.29 -51.93 -0.33 0.16 16 42 H 0.06 0.41 6.35 -51.93 -0.33 0.08 16 43 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.09 0.81 5.84 -51.93 -0.30 0.51 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.09 0.57 6.19 -51.93 -0.32 0.25 16 50 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 384.55 15.07 5.80 5.80 Total: -1.00 -32.62 384.55 -8.66 -41.28 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -8.61 Total: 8.94 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -0.11 Total: -4.84 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.42 Total: -53.96 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.29 Total: -13.89 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.62 -8.66 -41.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424157105.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.360 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds