Wall clock time and date at job start Fri Apr 10 2020 18:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47504 * 2 1 4 4 N 1.46497 * 109.47199 * 239.99263 * 2 1 3 5 5 C 1.34781 * 119.99716 * 85.00629 * 4 2 1 6 6 O 1.21286 * 119.99983 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00160 * 179.97438 * 5 4 2 8 8 H 1.09002 * 109.46753 * 39.99710 * 7 5 4 9 9 N 1.46898 * 109.47192 * 159.99754 * 7 5 4 10 10 C 1.52992 * 109.47482 * 279.99980 * 7 5 4 11 11 C 1.52997 * 109.47482 * 174.99860 * 10 7 5 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 C 1.53007 * 109.47006 * 119.99677 * 2 1 3 21 21 H 1.08995 * 109.46883 * 185.00139 * 20 2 1 22 22 C 1.52999 * 109.47076 * 64.99842 * 20 2 1 23 23 N 1.46899 * 109.46767 * 305.00345 * 20 2 1 24 24 C 1.47021 * 110.99823 * 303.62941 * 23 20 2 25 25 C 1.53103 * 109.25374 * 177.60978 * 24 23 20 26 26 O 1.43013 * 109.25904 * 56.85292 * 25 24 23 27 27 C 1.43015 * 113.74034 * 301.33018 * 26 25 24 28 28 C 1.47022 * 110.99604 * 180.02562 * 23 20 2 29 29 H 1.08998 * 109.47240 * 300.00718 * 1 2 3 30 30 H 1.08998 * 109.46851 * 60.00187 * 1 2 3 31 31 H 1.09002 * 109.47039 * 179.97438 * 1 2 3 32 32 H 0.96994 * 120.00502 * 264.99762 * 4 2 1 33 33 H 1.00906 * 111.00043 * 296.04677 * 9 7 5 34 34 H 1.00899 * 111.00057 * 59.99855 * 9 7 5 35 35 H 1.09002 * 109.47103 * 54.99613 * 10 7 5 36 36 H 1.08998 * 109.46862 * 295.00425 * 10 7 5 37 37 H 1.09002 * 109.47153 * 59.99783 * 11 10 7 38 38 H 1.09001 * 109.46832 * 299.99974 * 11 10 7 39 39 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 40 40 H 1.08998 * 109.47269 * 300.00389 * 22 20 2 41 41 H 1.09002 * 109.47061 * 60.00135 * 22 20 2 42 42 H 1.08998 * 109.47258 * 180.02562 * 22 20 2 43 43 H 1.08993 * 109.50661 * 297.54257 * 24 23 20 44 44 H 1.08994 * 109.50415 * 57.67834 * 24 23 20 45 45 H 1.08994 * 109.50943 * 296.91363 * 25 24 23 46 46 H 1.09005 * 109.53434 * 176.80610 * 25 24 23 47 47 H 1.09005 * 109.50431 * 298.73527 * 27 26 25 48 48 H 1.09002 * 109.54713 * 178.63135 * 27 26 25 49 49 H 1.09000 * 109.50376 * 302.31839 * 28 23 20 50 50 H 1.08997 * 109.50952 * 62.41232 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8584 1.1583 -2.4117 7 6 2.6501 -0.7288 -3.5874 8 1 2.2158 -1.7275 -3.6332 9 7 2.2615 0.0297 -4.7839 10 6 4.1749 -0.8381 -3.5258 11 6 4.6751 -1.6669 -4.7105 12 6 6.1771 -1.7741 -4.6501 13 1 6.7205 -1.2989 -3.8468 14 6 6.8574 -2.4797 -5.6198 15 7 6.1956 -3.0587 -6.5977 16 14 8.7191 -2.6130 -5.5445 17 1 9.1172 -3.2729 -4.2751 18 1 9.2046 -3.4174 -6.6945 19 1 9.3156 -1.2544 -5.6045 20 6 2.0400 -0.7212 1.2493 21 1 3.1263 -0.6443 1.2952 22 6 1.6352 -2.1954 1.1882 23 7 1.4542 -0.1019 2.4456 24 6 1.7507 1.3374 2.4927 25 6 1.0733 1.9526 3.7201 26 8 1.5170 1.2697 4.8957 27 6 1.2437 -0.1341 4.8838 28 6 1.9233 -0.7702 3.6683 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6318 -1.1524 33 1 1.2577 0.0608 -4.8821 34 1 2.6520 0.9599 -4.7650 35 1 4.4670 -1.3227 -2.5941 36 1 4.6126 0.1592 -3.5693 37 1 4.3829 -1.1824 -5.6421 38 1 4.2373 -2.6642 -4.6668 39 1 6.6743 -3.5548 -7.2801 40 1 0.5489 -2.2723 1.1422 41 1 2.0698 -2.6550 0.3005 42 1 1.9981 -2.7091 2.0784 43 1 2.8286 1.4848 2.5597 44 1 1.3725 1.8166 1.5897 45 1 -0.0081 1.8526 3.6274 46 1 1.3365 3.0080 3.7910 47 1 0.1672 -0.2948 4.8249 48 1 1.6301 -0.5886 5.7961 49 1 1.6710 -1.8296 3.6236 50 1 3.0040 -0.6566 3.7534 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424157105.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:31 Heat of formation + Delta-G solvation = -110.945520 kcal Electronic energy + Delta-G solvation = -27243.876880 eV Core-core repulsion = 23497.586084 eV Total energy + Delta-G solvation = -3746.290796 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.47799 -40.57977 -38.42030 -36.78619 -35.69508 -34.81274 -32.42917 -32.38307 -31.91621 -30.26836 -28.12616 -27.65898 -26.03078 -25.16404 -24.18981 -22.49022 -21.77528 -21.24717 -20.54374 -18.80017 -18.17403 -17.73077 -17.35581 -17.02666 -16.91406 -16.48294 -16.34670 -16.00730 -15.89897 -15.66728 -15.32822 -15.08005 -14.91428 -14.77847 -14.28236 -13.91101 -13.75932 -13.47276 -13.40141 -13.16370 -13.03859 -12.78571 -12.74102 -12.61605 -12.52964 -12.33733 -12.28582 -12.07404 -11.75796 -11.63773 -11.49509 -11.44055 -11.25966 -10.99755 -10.68271 -10.48899 -10.17668 -9.62307 -9.47873 -8.14162 -6.24470 1.41113 1.43822 1.50357 1.52478 2.05023 2.44046 2.73300 2.95054 3.18791 3.50127 3.57496 3.79716 3.83512 3.91944 3.99062 4.08852 4.11603 4.16755 4.26280 4.30988 4.31785 4.42865 4.54718 4.55535 4.67395 4.70353 4.76802 4.77462 4.82148 4.88734 4.91566 4.98255 4.98316 5.02017 5.22677 5.25111 5.38563 5.46431 5.56513 5.84365 5.86315 5.89026 5.98500 6.09837 6.17129 6.30100 6.44209 6.53589 6.94137 7.14509 7.43579 8.96832 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.017221 B = 0.002686 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.491502 B =10423.140192 C =11283.461576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.147 3.853 3 H 0.063 0.937 4 N -0.712 5.712 5 C 0.491 3.509 6 O -0.581 6.581 7 C 0.085 3.915 8 H 0.111 0.889 9 N -0.819 5.819 10 C -0.081 4.081 11 C 0.040 3.960 12 C -0.545 4.545 13 H 0.055 0.945 14 C 0.003 3.997 15 N -0.929 5.929 16 Si 0.958 3.042 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.080 3.920 21 H 0.036 0.964 22 C -0.150 4.150 23 N -0.521 5.521 24 C 0.010 3.990 25 C 0.067 3.933 26 O -0.407 6.407 27 C 0.062 3.938 28 C 0.015 3.985 29 H 0.081 0.919 30 H 0.033 0.967 31 H 0.070 0.930 32 H 0.411 0.589 33 H 0.346 0.654 34 H 0.345 0.655 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.005 0.995 38 H -0.005 1.005 39 H 0.262 0.738 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.030 0.970 44 H 0.088 0.912 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.067 0.933 48 H 0.113 0.887 49 H 0.108 0.892 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.111 3.408 23.350 27.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.042 3.958 3 H 0.081 0.919 4 N -0.366 5.366 5 C 0.277 3.723 6 O -0.461 6.461 7 C -0.031 4.031 8 H 0.129 0.871 9 N -0.347 5.347 10 C -0.119 4.119 11 C 0.003 3.997 12 C -0.583 4.583 13 H 0.073 0.927 14 C -0.195 4.195 15 N -0.569 5.569 16 Si 0.783 3.217 17 H -0.190 1.190 18 H -0.209 1.209 19 H -0.197 1.197 20 C -0.029 4.029 21 H 0.054 0.946 22 C -0.207 4.207 23 N -0.247 5.247 24 C -0.118 4.118 25 C -0.010 4.010 26 O -0.326 6.326 27 C -0.014 4.014 28 C -0.113 4.113 29 H 0.100 0.900 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.249 0.751 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.024 0.976 38 H 0.014 0.986 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.048 0.952 44 H 0.106 0.894 45 H 0.085 0.915 46 H 0.125 0.875 47 H 0.085 0.915 48 H 0.131 0.869 49 H 0.126 0.874 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -14.317 3.603 22.875 27.226 hybrid contribution 1.509 0.227 -0.007 1.526 sum -12.808 3.830 22.869 26.489 Atomic orbital electron populations 1.21977 0.93530 1.02850 1.01596 1.20904 0.95581 0.95848 0.83508 0.91884 1.46217 1.66537 1.14747 1.09066 1.22336 0.76184 0.87426 0.86396 1.90633 1.52227 1.17434 1.85772 1.21638 0.97531 0.98399 0.85483 0.87142 1.58976 1.16410 1.22103 1.37259 1.21377 0.90806 0.99805 0.99943 1.18816 0.93702 0.93627 0.93564 1.21707 0.94145 1.32517 1.09969 0.92708 1.25889 1.03265 0.95314 0.95070 1.70094 1.37455 1.35353 1.14024 0.85610 0.79911 0.78285 0.77870 1.19044 1.20900 1.19709 1.21746 0.96143 0.96057 0.88939 0.94575 1.21976 1.03334 0.92502 1.02886 1.62296 1.58383 1.02330 1.01696 1.22891 0.98856 0.89485 1.00593 1.22718 0.98737 0.96722 0.82827 1.87966 1.82468 1.21613 1.40586 1.22815 1.00310 0.80349 0.97937 1.22931 0.97785 1.00775 0.89832 0.90021 0.94793 0.91124 0.75066 0.84024 0.84193 0.91537 0.94104 0.97647 0.98635 0.92902 0.90426 0.91467 0.90779 0.95163 0.89359 0.91456 0.87472 0.91518 0.86889 0.87388 0.94909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.90 71.98 0.64 -2.02 16 2 C 0.15 3.03 1.87 45.00 0.08 3.12 16 3 H 0.06 1.61 6.03 -2.39 -0.01 1.60 16 4 N -0.71 -16.34 4.99 -442.51 -2.21 -18.55 16 5 C 0.49 14.75 7.03 87.66 0.62 15.37 16 6 O -0.58 -20.80 15.91 -3.05 -0.05 -20.85 16 7 C 0.09 2.78 3.15 44.17 0.14 2.92 16 8 H 0.11 3.30 8.14 -2.39 -0.02 3.29 16 9 N -0.82 -27.56 8.44 -171.81 -1.45 -29.01 16 10 C -0.08 -3.23 4.78 30.59 0.15 -3.08 16 11 C 0.04 2.07 4.86 29.85 0.15 2.22 16 12 C -0.55 -30.87 9.11 25.60 0.23 -30.64 16 13 H 0.05 2.99 7.74 -2.91 -0.02 2.96 16 14 C 0.00 0.15 5.46 84.66 0.46 0.61 16 15 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 16 Si 0.96 44.30 29.54 68.60 2.03 46.32 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 C 0.08 1.33 2.10 44.92 0.09 1.43 16 21 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 22 C -0.15 -1.90 8.48 71.98 0.61 -1.29 16 23 N -0.52 -7.95 3.69 -869.94 -3.21 -11.16 16 24 C 0.01 0.17 4.96 86.31 0.43 0.59 16 25 C 0.07 0.98 7.01 72.02 0.50 1.48 16 26 O -0.41 -7.15 10.83 -148.98 -1.61 -8.76 16 27 C 0.06 0.77 7.01 72.02 0.50 1.28 16 28 C 0.01 0.19 5.34 86.31 0.46 0.65 16 29 H 0.08 1.40 6.93 -2.39 -0.02 1.38 16 30 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 1.16 6.57 -2.39 -0.02 1.14 16 32 H 0.41 7.84 6.58 -92.71 -0.61 7.23 16 33 H 0.35 9.99 9.06 -89.69 -0.81 9.18 16 34 H 0.34 11.94 8.58 -89.69 -0.77 11.17 16 35 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.01 0.29 7.75 -2.39 -0.02 0.27 16 38 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 39 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 40 H 0.08 0.93 6.57 -2.39 -0.02 0.92 16 41 H 0.07 0.83 6.29 -2.39 -0.02 0.82 16 42 H 0.07 0.78 6.35 -2.39 -0.02 0.76 16 43 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.09 1.53 5.84 -2.39 -0.01 1.52 16 45 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 47 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 48 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.11 1.04 6.19 -2.39 -0.01 1.02 16 50 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -70.10 384.55 -2.39 -72.48 By element: Atomic # 1 Polarization: 34.35 SS G_CDS: -1.24 Total: 33.12 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 5.07 Total: -7.37 kcal Atomic # 7 Polarization: -108.36 SS G_CDS: -6.59 Total: -114.95 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -1.66 Total: -29.61 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -70.10 -2.39 -72.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424157105.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.461 kcal (2) G-P(sol) polarization free energy of solvation -70.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds