Wall clock time and date at job start Fri Apr 10 2020 18:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46845 * 2 1 4 4 C 1.52995 * 109.47150 * 239.99835 * 2 1 3 5 5 H 1.08995 * 109.47109 * 305.10378 * 4 2 1 6 6 C 1.52995 * 109.47418 * 185.09943 * 4 2 1 7 7 N 1.46500 * 109.46928 * 65.09838 * 4 2 1 8 8 C 1.34774 * 119.99943 * 204.99970 * 7 4 2 9 9 O 1.21284 * 120.00324 * 0.02562 * 8 7 4 10 10 C 1.50707 * 120.00370 * 180.02562 * 8 7 4 11 11 H 1.09007 * 109.46624 * 40.00069 * 10 8 7 12 12 N 1.46897 * 109.47396 * 159.99756 * 10 8 7 13 13 C 1.53000 * 109.47208 * 280.00440 * 10 8 7 14 14 C 1.52996 * 109.47099 * 174.99637 * 13 10 8 15 15 C 1.50702 * 109.47217 * 179.97438 * 14 13 10 16 16 H 1.08001 * 119.99270 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00044 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99977 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99875 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46869 * 60.00151 * 19 17 15 21 21 H 1.48502 * 109.46843 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.46930 * 300.00041 * 19 17 15 23 23 N 1.46896 * 109.47293 * 119.99563 * 2 1 3 24 24 C 1.47012 * 110.99758 * 59.77797 * 23 2 1 25 25 C 1.53106 * 109.25952 * 177.60764 * 24 23 2 26 26 O 1.43009 * 109.25642 * 56.84716 * 25 24 23 27 27 C 1.43016 * 113.73994 * 301.33195 * 26 25 24 28 28 C 1.47017 * 111.00106 * 296.14452 * 23 2 1 29 29 H 1.08996 * 109.47232 * 60.00116 * 1 2 3 30 30 H 1.08999 * 109.47308 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47243 * 299.99802 * 1 2 3 32 32 H 1.09005 * 109.46932 * 305.20672 * 6 4 2 33 33 H 1.09001 * 109.46907 * 65.20103 * 6 4 2 34 34 H 1.09002 * 109.47454 * 185.20278 * 6 4 2 35 35 H 0.96997 * 120.00257 * 25.00751 * 7 4 2 36 36 H 1.00900 * 110.99883 * 60.00408 * 12 10 8 37 37 H 1.00896 * 111.00085 * 183.95946 * 12 10 8 38 38 H 1.08995 * 109.46757 * 294.99623 * 13 10 8 39 39 H 1.08999 * 109.47146 * 54.99529 * 13 10 8 40 40 H 1.09008 * 109.47150 * 299.99979 * 14 13 10 41 41 H 1.08999 * 109.47210 * 59.99931 * 14 13 10 42 42 H 0.97002 * 119.99690 * 179.97438 * 18 17 15 43 43 H 1.09002 * 109.51107 * 57.67240 * 24 23 2 44 44 H 1.09004 * 109.54428 * 297.56235 * 24 23 2 45 45 H 1.08999 * 109.50743 * 176.78265 * 25 24 23 46 46 H 1.09003 * 109.50341 * 296.91503 * 25 24 23 47 47 H 1.08993 * 109.50367 * 298.73216 * 27 26 25 48 48 H 1.09001 * 109.54056 * 178.62905 * 27 26 25 49 49 H 1.08994 * 109.50564 * 302.32292 * 28 23 2 50 50 H 1.08993 * 109.50794 * 62.45948 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6039 -1.7191 -1.2960 6 6 3.5645 -0.8333 -1.1868 7 7 1.6544 0.0366 -2.4422 8 6 1.5277 -0.5917 -3.6278 9 8 1.7323 -1.7845 -3.7070 10 6 1.1316 0.1879 -4.8552 11 1 1.6390 1.1527 -4.8522 12 7 1.5157 -0.5634 -6.0577 13 6 -0.3825 0.4079 -4.8532 14 6 -0.7692 1.3042 -6.0312 15 6 -2.2606 1.5204 -6.0296 16 1 -2.8715 1.0637 -5.2649 17 6 -2.8451 2.3011 -7.0042 18 7 -2.1011 2.8576 -7.9349 19 14 -4.6938 2.5696 -7.0016 20 1 -5.0975 3.2214 -5.7299 21 1 -5.0691 3.4395 -8.1452 22 1 -5.3841 1.2611 -7.1283 23 7 2.0197 -0.6924 1.1994 24 6 1.5440 -2.0829 1.2361 25 6 2.1247 -2.7830 2.4677 26 8 1.7572 -2.0539 3.6418 27 6 2.2051 -0.6957 3.6398 28 6 1.6251 0.0256 2.4202 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 3.9962 0.1578 -1.0470 33 1 3.8479 -1.4740 -0.3517 34 1 3.9357 -1.2634 -2.1171 35 1 1.4905 0.9905 -2.3788 36 1 1.0582 -1.4623 -6.0838 37 1 1.3194 -0.0333 -6.8934 38 1 -0.8892 -0.5526 -4.9457 39 1 -0.6788 0.8866 -3.9198 40 1 -0.2623 2.2648 -5.9387 41 1 -0.4729 0.8255 -6.9646 42 1 -2.5124 3.4065 -8.6208 43 1 1.8690 -2.6028 0.3349 44 1 0.4553 -2.0946 1.2904 45 1 1.7294 -3.7969 2.5302 46 1 3.2111 -2.8195 2.3871 47 1 3.2938 -0.6716 3.5933 48 1 1.8686 -0.1995 4.5501 49 1 2.0095 1.0448 2.3833 50 1 0.5379 0.0483 2.4938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424157108.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:37 Heat of formation + Delta-G solvation = -89.774447 kcal Electronic energy + Delta-G solvation = -27309.410813 eV Core-core repulsion = 23564.038064 eV Total energy + Delta-G solvation = -3745.372749 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.52110 -39.51723 -37.45106 -35.52675 -34.64025 -32.86949 -31.64997 -31.12008 -29.95015 -29.84319 -26.93337 -26.41876 -24.51893 -24.28293 -23.36179 -21.45419 -20.63730 -20.00501 -19.60852 -17.51799 -16.95702 -16.48953 -16.18518 -16.14228 -15.48211 -15.21029 -15.08859 -14.80905 -14.56464 -14.47036 -14.26563 -13.99187 -13.66507 -13.59812 -13.11628 -12.96685 -12.60499 -12.38398 -12.27075 -12.15808 -12.01996 -11.80529 -11.71826 -11.52282 -11.42041 -11.09299 -10.92814 -10.87389 -10.72911 -10.66118 -10.02760 -10.01088 -9.90564 -9.31410 -9.22030 -9.00359 -8.67066 -8.46139 -8.19071 -6.10773 -4.14119 2.94317 3.03314 3.26280 3.31402 3.33584 3.51210 3.67554 4.30263 4.37136 4.55584 4.57152 4.76293 4.80023 4.82717 4.94334 4.98654 5.04796 5.16922 5.19178 5.25372 5.28512 5.32754 5.34179 5.42383 5.47070 5.56011 5.58004 5.62717 5.64935 5.74790 5.80880 5.92782 6.00653 6.22942 6.26179 6.48953 6.51906 6.59260 6.67831 6.79534 6.85085 7.42735 7.49568 7.59309 7.70949 7.86048 7.90030 8.28637 8.48335 8.91625 9.50834 11.00079 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.017954 B = 0.002721 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.166937 B =10286.992550 C =11307.062762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.075 3.925 3 H 0.090 0.910 4 C 0.151 3.849 5 H 0.085 0.915 6 C -0.150 4.150 7 N -0.729 5.729 8 C 0.529 3.471 9 O -0.538 6.538 10 C 0.074 3.926 11 H 0.096 0.904 12 N -0.831 5.831 13 C -0.136 4.136 14 C 0.025 3.975 15 C -0.525 4.525 16 H 0.054 0.946 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.277 1.277 23 N -0.522 5.522 24 C 0.006 3.994 25 C 0.065 3.935 26 O -0.387 6.387 27 C 0.065 3.935 28 C 0.015 3.985 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.399 0.601 36 H 0.345 0.655 37 H 0.354 0.646 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.262 0.738 43 H 0.091 0.909 44 H 0.049 0.951 45 H 0.097 0.903 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.096 0.904 49 H 0.086 0.914 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.310 -5.456 20.996 24.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.034 4.034 3 H 0.108 0.892 4 C 0.045 3.955 5 H 0.103 0.897 6 C -0.208 4.208 7 N -0.383 5.383 8 C 0.315 3.685 9 O -0.414 6.414 10 C -0.041 4.041 11 H 0.114 0.886 12 N -0.363 5.363 13 C -0.176 4.176 14 C -0.012 4.012 15 C -0.563 4.563 16 H 0.072 0.928 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 N -0.246 5.246 24 C -0.122 4.122 25 C -0.012 4.012 26 O -0.306 6.306 27 C -0.013 4.013 28 C -0.113 4.113 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.234 0.766 36 H 0.158 0.842 37 H 0.169 0.831 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.072 0.928 43 H 0.110 0.890 44 H 0.068 0.932 45 H 0.115 0.885 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.114 0.886 49 H 0.104 0.896 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.619 -6.282 21.193 24.972 hybrid contribution -2.992 1.021 -0.517 3.203 sum 8.628 -5.261 20.675 23.013 Atomic orbital electron populations 1.22475 0.96580 1.02794 1.02927 1.21941 0.93420 0.98503 0.89520 0.89206 1.20828 0.95662 0.95960 0.83014 0.89719 1.22024 0.94561 1.02140 1.02082 1.46009 1.71834 1.12355 1.08080 1.20851 0.75235 0.88055 0.84313 1.90628 1.49746 1.15507 1.85494 1.21479 0.97006 0.96601 0.88999 0.88639 1.58739 1.65984 1.07728 1.03800 1.22366 0.91721 1.01370 1.02132 1.19096 0.96535 0.93940 0.91675 1.21139 0.92587 1.30624 1.11963 0.92819 1.25008 0.98174 0.95636 0.95451 1.69938 1.35400 1.32897 1.14940 0.86647 0.85557 0.78200 0.77558 1.20226 1.21187 1.20225 1.62410 1.58784 1.01947 1.01486 1.22937 0.99110 0.90019 1.00095 1.22674 0.99664 0.95171 0.83721 1.87986 1.78705 1.23392 1.40467 1.22651 0.98948 0.82265 0.97386 1.22818 0.99501 0.98673 0.90345 0.91012 0.92143 0.92263 0.92733 0.91155 0.92523 0.76634 0.84170 0.83086 0.92759 0.92660 0.96343 0.96411 0.92799 0.89049 0.93232 0.88462 0.92216 0.92266 0.88556 0.89550 0.93369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.81 8.38 37.16 0.31 -1.50 16 2 C 0.08 0.67 2.02 -67.72 -0.14 0.53 16 3 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 4 C 0.15 1.65 1.62 -67.94 -0.11 1.54 16 5 H 0.08 1.10 6.07 -51.93 -0.32 0.78 16 6 C -0.15 -1.60 9.17 37.15 0.34 -1.26 16 7 N -0.73 -8.95 4.53 -53.81 -0.24 -9.20 16 8 C 0.53 8.46 7.04 -10.98 -0.08 8.39 16 9 O -0.54 -10.24 15.91 5.55 0.09 -10.15 16 10 C 0.07 1.24 3.21 -68.86 -0.22 1.02 16 11 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 12 N -0.83 -14.24 8.94 -5.65 -0.05 -14.29 16 13 C -0.14 -2.62 4.78 -26.73 -0.13 -2.74 16 14 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16 15 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 16 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 19 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 N -0.52 -4.37 3.86 -226.34 -0.87 -5.25 16 24 C 0.01 0.06 4.73 -3.71 -0.02 0.04 16 25 C 0.06 0.52 7.01 37.21 0.26 0.78 16 26 O -0.39 -3.66 10.83 -35.23 -0.38 -4.05 16 27 C 0.06 0.47 7.01 37.21 0.26 0.73 16 28 C 0.01 0.11 5.29 -3.71 -0.02 0.09 16 29 H 0.07 0.75 7.76 -51.93 -0.40 0.35 16 30 H 0.06 0.63 6.45 -51.93 -0.34 0.29 16 31 H 0.06 0.52 6.55 -51.92 -0.34 0.18 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.70 7.46 -51.93 -0.39 0.31 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.40 4.16 8.60 -40.82 -0.35 3.81 16 36 H 0.35 6.01 8.58 -39.29 -0.34 5.68 16 37 H 0.35 6.09 7.55 -39.29 -0.30 5.80 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 41 H 0.02 0.44 6.87 -51.93 -0.36 0.09 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.09 0.82 6.23 -51.93 -0.32 0.49 16 44 H 0.05 0.47 6.44 -51.93 -0.33 0.13 16 45 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.05 0.39 6.53 -51.93 -0.34 0.05 16 LS Contribution 386.61 15.07 5.83 5.83 Total: -1.00 -31.32 386.61 -8.73 -40.06 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -8.73 Total: 11.05 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -0.08 Total: -4.98 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.43 Total: -53.88 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.29 Total: -14.19 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.32 -8.73 -40.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424157108.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.719 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds