Wall clock time and date at job start Fri Apr 10 2020 18:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46845 * 2 1 4 4 C 1.52995 * 109.47150 * 239.99835 * 2 1 3 5 5 H 1.08995 * 109.47109 * 305.10378 * 4 2 1 6 6 C 1.52995 * 109.47418 * 185.09943 * 4 2 1 7 7 N 1.46500 * 109.46928 * 65.09838 * 4 2 1 8 8 C 1.34774 * 119.99943 * 204.99970 * 7 4 2 9 9 O 1.21284 * 120.00324 * 0.02562 * 8 7 4 10 10 C 1.50707 * 120.00370 * 180.02562 * 8 7 4 11 11 H 1.09007 * 109.46624 * 40.00069 * 10 8 7 12 12 N 1.46897 * 109.47396 * 159.99756 * 10 8 7 13 13 C 1.53000 * 109.47208 * 280.00440 * 10 8 7 14 14 C 1.52996 * 109.47099 * 174.99637 * 13 10 8 15 15 C 1.50702 * 109.47217 * 179.97438 * 14 13 10 16 16 H 1.08001 * 119.99270 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00044 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99977 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99875 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46869 * 60.00151 * 19 17 15 21 21 H 1.48502 * 109.46843 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.46930 * 300.00041 * 19 17 15 23 23 N 1.46896 * 109.47293 * 119.99563 * 2 1 3 24 24 C 1.47012 * 110.99758 * 59.77797 * 23 2 1 25 25 C 1.53106 * 109.25952 * 177.60764 * 24 23 2 26 26 O 1.43009 * 109.25642 * 56.84716 * 25 24 23 27 27 C 1.43016 * 113.73994 * 301.33195 * 26 25 24 28 28 C 1.47017 * 111.00106 * 296.14452 * 23 2 1 29 29 H 1.08996 * 109.47232 * 60.00116 * 1 2 3 30 30 H 1.08999 * 109.47308 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47243 * 299.99802 * 1 2 3 32 32 H 1.09005 * 109.46932 * 305.20672 * 6 4 2 33 33 H 1.09001 * 109.46907 * 65.20103 * 6 4 2 34 34 H 1.09002 * 109.47454 * 185.20278 * 6 4 2 35 35 H 0.96997 * 120.00257 * 25.00751 * 7 4 2 36 36 H 1.00900 * 110.99883 * 60.00408 * 12 10 8 37 37 H 1.00896 * 111.00085 * 183.95946 * 12 10 8 38 38 H 1.08995 * 109.46757 * 294.99623 * 13 10 8 39 39 H 1.08999 * 109.47146 * 54.99529 * 13 10 8 40 40 H 1.09008 * 109.47150 * 299.99979 * 14 13 10 41 41 H 1.08999 * 109.47210 * 59.99931 * 14 13 10 42 42 H 0.97002 * 119.99690 * 179.97438 * 18 17 15 43 43 H 1.09002 * 109.51107 * 57.67240 * 24 23 2 44 44 H 1.09004 * 109.54428 * 297.56235 * 24 23 2 45 45 H 1.08999 * 109.50743 * 176.78265 * 25 24 23 46 46 H 1.09003 * 109.50341 * 296.91503 * 25 24 23 47 47 H 1.08993 * 109.50367 * 298.73216 * 27 26 25 48 48 H 1.09001 * 109.54056 * 178.62905 * 27 26 25 49 49 H 1.08994 * 109.50564 * 302.32292 * 28 23 2 50 50 H 1.08993 * 109.50794 * 62.45948 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6039 -1.7191 -1.2960 6 6 3.5645 -0.8333 -1.1868 7 7 1.6544 0.0366 -2.4422 8 6 1.5277 -0.5917 -3.6278 9 8 1.7323 -1.7845 -3.7070 10 6 1.1316 0.1879 -4.8552 11 1 1.6390 1.1527 -4.8522 12 7 1.5157 -0.5634 -6.0577 13 6 -0.3825 0.4079 -4.8532 14 6 -0.7692 1.3042 -6.0312 15 6 -2.2606 1.5204 -6.0296 16 1 -2.8715 1.0637 -5.2649 17 6 -2.8451 2.3011 -7.0042 18 7 -2.1011 2.8576 -7.9349 19 14 -4.6938 2.5696 -7.0016 20 1 -5.0975 3.2214 -5.7299 21 1 -5.0691 3.4395 -8.1452 22 1 -5.3841 1.2611 -7.1283 23 7 2.0197 -0.6924 1.1994 24 6 1.5440 -2.0829 1.2361 25 6 2.1247 -2.7830 2.4677 26 8 1.7572 -2.0539 3.6418 27 6 2.2051 -0.6957 3.6398 28 6 1.6251 0.0256 2.4202 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 3.9962 0.1578 -1.0470 33 1 3.8479 -1.4740 -0.3517 34 1 3.9357 -1.2634 -2.1171 35 1 1.4905 0.9905 -2.3788 36 1 1.0582 -1.4623 -6.0838 37 1 1.3194 -0.0333 -6.8934 38 1 -0.8892 -0.5526 -4.9457 39 1 -0.6788 0.8866 -3.9198 40 1 -0.2623 2.2648 -5.9387 41 1 -0.4729 0.8255 -6.9646 42 1 -2.5124 3.4065 -8.6208 43 1 1.8690 -2.6028 0.3349 44 1 0.4553 -2.0946 1.2904 45 1 1.7294 -3.7969 2.5302 46 1 3.2111 -2.8195 2.3871 47 1 3.2938 -0.6716 3.5933 48 1 1.8686 -0.1995 4.5501 49 1 2.0095 1.0448 2.3833 50 1 0.5379 0.0483 2.4938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424157108.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:37 Heat of formation + Delta-G solvation = -113.720545 kcal Electronic energy + Delta-G solvation = -27310.449194 eV Core-core repulsion = 23564.038064 eV Total energy + Delta-G solvation = -3746.411130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41107 -40.55328 -38.31305 -37.03026 -35.65365 -34.83755 -32.34984 -31.95463 -31.68265 -30.75267 -28.16831 -27.48381 -25.87932 -25.10527 -24.41641 -22.60758 -21.92421 -21.20760 -20.46912 -18.92769 -18.18536 -17.75997 -17.20154 -16.94277 -16.55464 -16.13873 -16.06855 -15.99103 -15.86183 -15.64334 -15.40567 -15.07789 -14.83229 -14.58438 -14.51102 -14.22868 -13.95989 -13.47244 -13.20997 -13.19068 -13.15701 -12.92605 -12.75519 -12.67946 -12.55053 -12.47726 -12.34175 -12.14335 -11.80862 -11.70654 -11.55591 -11.39534 -11.32143 -10.74949 -10.62856 -10.56311 -10.10908 -9.63468 -9.36726 -8.22052 -6.32450 1.39077 1.40465 1.48446 1.64371 2.02613 2.39111 2.82139 2.99707 3.11615 3.50086 3.75425 3.82858 3.85994 3.97365 4.05632 4.11688 4.13719 4.17542 4.25858 4.29407 4.35204 4.41768 4.51747 4.61279 4.66647 4.70379 4.75089 4.79941 4.83492 4.87007 4.90282 4.92851 5.01768 5.07570 5.08835 5.20443 5.35307 5.45876 5.53724 5.65593 5.80240 5.90501 5.94011 6.07925 6.20271 6.20679 6.47402 6.55822 6.83040 7.26778 7.36673 8.88496 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.017954 B = 0.002721 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.166937 B =10286.992550 C =11307.062762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.085 3.915 3 H 0.106 0.894 4 C 0.152 3.848 5 H 0.065 0.935 6 C -0.140 4.140 7 N -0.713 5.713 8 C 0.531 3.469 9 O -0.571 6.571 10 C 0.080 3.920 11 H 0.109 0.891 12 N -0.830 5.830 13 C -0.119 4.119 14 C 0.030 3.970 15 C -0.546 4.546 16 H 0.054 0.946 17 C 0.006 3.994 18 N -0.926 5.926 19 Si 0.957 3.043 20 H -0.267 1.267 21 H -0.283 1.283 22 H -0.272 1.272 23 N -0.521 5.521 24 C 0.009 3.991 25 C 0.065 3.935 26 O -0.407 6.407 27 C 0.062 3.938 28 C 0.015 3.985 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.031 0.969 35 H 0.412 0.588 36 H 0.343 0.657 37 H 0.352 0.648 38 H 0.042 0.958 39 H 0.066 0.934 40 H 0.003 0.997 41 H 0.001 0.999 42 H 0.264 0.736 43 H 0.085 0.915 44 H 0.039 0.961 45 H 0.106 0.894 46 H 0.064 0.936 47 H 0.064 0.936 48 H 0.113 0.887 49 H 0.103 0.897 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.253 -4.702 22.773 25.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.024 4.024 3 H 0.124 0.876 4 C 0.047 3.953 5 H 0.083 0.917 6 C -0.199 4.199 7 N -0.366 5.366 8 C 0.317 3.683 9 O -0.449 6.449 10 C -0.035 4.035 11 H 0.127 0.873 12 N -0.362 5.362 13 C -0.158 4.158 14 C -0.007 4.007 15 C -0.584 4.584 16 H 0.073 0.927 17 C -0.193 4.193 18 N -0.566 5.566 19 Si 0.782 3.218 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.197 1.197 23 N -0.246 5.246 24 C -0.119 4.119 25 C -0.011 4.011 26 O -0.326 6.326 27 C -0.015 4.015 28 C -0.112 4.112 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.248 0.752 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.021 0.979 41 H 0.019 0.981 42 H 0.073 0.927 43 H 0.103 0.897 44 H 0.057 0.943 45 H 0.124 0.876 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.131 0.869 49 H 0.121 0.879 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.569 -5.504 23.010 26.336 hybrid contribution -2.943 0.786 -1.038 3.218 sum 8.626 -4.718 21.972 24.071 Atomic orbital electron populations 1.22440 0.97027 1.01993 1.02951 1.21843 0.92870 0.98953 0.88760 0.87563 1.20879 0.95971 0.95173 0.83237 0.91691 1.21929 0.93951 1.02836 1.01138 1.45877 1.70267 1.12993 1.07433 1.20634 0.75244 0.87451 0.84946 1.90620 1.51516 1.16767 1.86010 1.21426 0.95246 0.97395 0.89442 0.87292 1.58757 1.65794 1.07650 1.03965 1.22108 0.93556 0.99630 1.00550 1.18962 0.94983 0.93869 0.92862 1.21593 0.94319 1.30480 1.11961 0.92749 1.25853 1.02846 0.95436 0.95123 1.70052 1.37310 1.33639 1.15630 0.85617 0.79986 0.78241 0.77918 1.19154 1.20832 1.19720 1.62432 1.58587 1.01845 1.01691 1.22894 0.98473 0.90357 1.00223 1.22725 0.99927 0.95467 0.83018 1.87963 1.79097 1.24535 1.40978 1.22807 0.99272 0.81396 0.98009 1.22882 0.99195 0.99401 0.89758 0.91915 0.93393 0.91246 0.91458 0.90255 0.94941 0.75202 0.84405 0.83310 0.93949 0.91505 0.97892 0.98060 0.92719 0.89676 0.94283 0.87577 0.91728 0.91785 0.86949 0.87885 0.94032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.29 8.38 71.98 0.60 -2.69 16 2 C 0.08 1.35 2.02 44.91 0.09 1.44 16 3 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 4 C 0.15 3.17 1.62 44.99 0.07 3.24 16 5 H 0.06 1.67 6.07 -2.39 -0.01 1.65 16 6 C -0.14 -2.81 9.17 71.98 0.66 -2.14 16 7 N -0.71 -16.57 4.53 -442.55 -2.01 -18.58 16 8 C 0.53 16.66 7.04 87.66 0.62 17.28 16 9 O -0.57 -21.73 15.91 -3.04 -0.05 -21.78 16 10 C 0.08 2.63 3.21 44.17 0.14 2.77 16 11 H 0.11 3.29 8.14 -2.38 -0.02 3.28 16 12 N -0.83 -28.53 8.94 -171.79 -1.54 -30.07 16 13 C -0.12 -4.52 4.78 30.59 0.15 -4.37 16 14 C 0.03 1.47 4.74 29.85 0.14 1.61 16 15 C -0.55 -29.67 9.11 25.60 0.23 -29.44 16 16 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 17 C 0.01 0.33 5.46 84.65 0.46 0.80 16 18 N -0.93 -54.04 13.29 21.45 0.28 -53.75 16 19 Si 0.96 43.04 29.54 68.60 2.03 45.06 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 N -0.52 -7.77 3.86 -869.99 -3.36 -11.12 16 24 C 0.01 0.14 4.73 86.32 0.41 0.55 16 25 C 0.07 0.97 7.01 72.02 0.50 1.47 16 26 O -0.41 -7.11 10.83 -148.98 -1.61 -8.72 16 27 C 0.06 0.76 7.01 72.01 0.50 1.27 16 28 C 0.02 0.19 5.29 86.31 0.46 0.65 16 29 H 0.06 1.22 7.76 -2.39 -0.02 1.21 16 30 H 0.05 0.97 6.45 -2.39 -0.02 0.96 16 31 H 0.07 1.09 6.55 -2.38 -0.02 1.08 16 32 H 0.07 1.17 8.14 -2.38 -0.02 1.16 16 33 H 0.08 1.45 7.46 -2.39 -0.02 1.43 16 34 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.41 7.70 8.60 -92.71 -0.80 6.91 16 36 H 0.34 12.09 8.58 -89.69 -0.77 11.32 16 37 H 0.35 12.27 7.55 -89.70 -0.68 11.59 16 38 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 41 H 0.00 0.06 6.87 -2.39 -0.02 0.04 16 42 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 43 H 0.08 1.49 6.23 -2.39 -0.01 1.48 16 44 H 0.04 0.72 6.44 -2.39 -0.02 0.70 16 45 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.04 0.59 6.53 -2.39 -0.02 0.57 16 Total: -1.00 -66.62 386.61 -2.50 -69.12 By element: Atomic # 1 Polarization: 38.70 SS G_CDS: -1.29 Total: 37.41 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 5.04 Total: -7.57 kcal Atomic # 7 Polarization: -106.91 SS G_CDS: -6.61 Total: -113.52 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -1.66 Total: -30.50 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -66.62 -2.50 -69.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424157108.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.603 kcal (2) G-P(sol) polarization free energy of solvation -66.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds