Wall clock time and date at job start Fri Apr 10 2020 18:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47308 * 2 1 4 4 C 1.52999 * 109.47126 * 239.99519 * 2 1 3 5 5 H 1.08998 * 109.47313 * 305.10182 * 4 2 1 6 6 C 1.52995 * 109.47440 * 185.09943 * 4 2 1 7 7 N 1.46500 * 109.47028 * 65.10123 * 4 2 1 8 8 C 1.34779 * 120.00272 * 205.00475 * 7 4 2 9 9 O 1.21280 * 119.99860 * 359.97438 * 8 7 4 10 10 C 1.50698 * 119.99964 * 180.02562 * 8 7 4 11 11 H 1.08997 * 109.46900 * 319.98977 * 10 8 7 12 12 N 1.46904 * 109.46665 * 199.99826 * 10 8 7 13 13 C 1.53001 * 109.47669 * 79.99390 * 10 8 7 14 14 C 1.52998 * 109.46981 * 184.99672 * 13 10 8 15 15 C 1.50698 * 109.46681 * 179.97438 * 14 13 10 16 16 H 1.07999 * 120.00308 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99779 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99959 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99850 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47203 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47172 * 119.99720 * 19 17 15 22 22 H 1.48497 * 109.46782 * 239.99555 * 19 17 15 23 23 N 1.46906 * 109.47288 * 119.99806 * 2 1 3 24 24 C 1.47015 * 110.99737 * 59.77388 * 23 2 1 25 25 C 1.53096 * 109.25512 * 177.60885 * 24 23 2 26 26 O 1.43009 * 109.25934 * 56.85172 * 25 24 23 27 27 C 1.43016 * 113.73994 * 301.32909 * 26 25 24 28 28 C 1.47014 * 110.99725 * 296.14427 * 23 2 1 29 29 H 1.08998 * 109.47091 * 300.00132 * 1 2 3 30 30 H 1.08996 * 109.47232 * 59.99892 * 1 2 3 31 31 H 1.09003 * 109.47060 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46907 * 65.20643 * 6 4 2 33 33 H 1.09002 * 109.47454 * 185.20818 * 6 4 2 34 34 H 1.09005 * 109.46932 * 305.21212 * 6 4 2 35 35 H 0.97004 * 120.00153 * 24.99660 * 7 4 2 36 36 H 1.00901 * 110.99918 * 176.04379 * 12 10 8 37 37 H 1.00898 * 110.99690 * 299.99253 * 12 10 8 38 38 H 1.08998 * 109.46761 * 304.99943 * 13 10 8 39 39 H 1.08998 * 109.46504 * 64.99869 * 13 10 8 40 40 H 1.08998 * 109.47594 * 299.99760 * 14 13 10 41 41 H 1.09006 * 109.47184 * 60.00400 * 14 13 10 42 42 H 0.97001 * 119.99810 * 179.97438 * 18 17 15 43 43 H 1.09002 * 109.50811 * 57.67471 * 24 23 2 44 44 H 1.09004 * 109.54778 * 297.56432 * 24 23 2 45 45 H 1.09007 * 109.50761 * 176.78131 * 25 24 23 46 46 H 1.08994 * 109.51081 * 296.91249 * 25 24 23 47 47 H 1.09002 * 109.50324 * 298.73418 * 27 26 25 48 48 H 1.08998 * 109.54334 * 178.62470 * 27 26 25 49 49 H 1.08994 * 109.50771 * 302.32202 * 28 23 2 50 50 H 1.08995 * 109.50720 * 62.45609 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6040 -1.7192 -1.2960 6 6 3.5646 -0.8334 -1.1868 7 7 1.6545 0.0364 -2.4422 8 6 1.5276 -0.5918 -3.6279 9 8 1.7331 -1.7845 -3.7072 10 6 1.1317 0.1878 -4.8552 11 1 0.3655 0.9167 -4.5910 12 7 0.6024 -0.7327 -5.8703 13 6 2.3561 0.9149 -5.4147 14 6 1.9306 1.8040 -6.5849 15 6 3.1365 2.5206 -7.1355 16 1 4.1092 2.3579 -6.6952 17 6 2.9981 3.3841 -8.2015 18 7 1.8138 3.5819 -8.7381 19 14 4.4931 4.2719 -8.8846 20 1 5.6982 3.8793 -8.1109 21 1 4.6785 3.9036 -10.3112 22 1 4.2907 5.7388 -8.7744 23 7 2.0197 -0.6925 1.1995 24 6 1.5439 -2.0830 1.2362 25 6 2.1246 -2.7830 2.4677 26 8 1.7572 -2.0539 3.6418 27 6 2.2050 -0.6957 3.6399 28 6 1.6251 0.0255 2.4202 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.8479 -1.4742 -0.3518 33 1 3.9357 -1.2634 -2.1171 34 1 3.9963 0.1577 -1.0469 35 1 1.4904 0.9904 -2.3789 36 1 0.2701 -0.2278 -6.6782 37 1 1.2944 -1.4187 -6.1322 38 1 2.8012 1.5309 -4.6334 39 1 3.0862 0.1834 -5.7609 40 1 1.4854 1.1880 -7.3662 41 1 1.2004 2.5356 -6.2386 42 1 1.7164 4.1897 -9.4878 43 1 1.8689 -2.6028 0.3349 44 1 0.4553 -2.0947 1.2905 45 1 1.7293 -3.7969 2.5303 46 1 3.2110 -2.8197 2.3871 47 1 3.2938 -0.6716 3.5934 48 1 1.8685 -0.1995 4.5501 49 1 2.0095 1.0447 2.3834 50 1 0.5379 0.0482 2.4938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424157109.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:39 Heat of formation + Delta-G solvation = -113.697520 kcal Electronic energy + Delta-G solvation = -27204.294012 eV Core-core repulsion = 23457.883881 eV Total energy + Delta-G solvation = -3746.410132 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.215 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.40780 -40.55202 -38.31111 -37.02296 -35.65298 -34.83290 -32.34767 -31.95064 -31.67726 -30.74920 -28.18365 -27.47457 -25.86518 -25.10329 -24.41035 -22.58759 -21.96563 -21.17914 -20.47760 -18.92410 -18.20108 -17.71914 -17.20968 -16.91940 -16.56977 -16.15545 -16.06588 -15.98729 -15.82538 -15.69238 -15.39529 -15.04948 -14.78238 -14.59657 -14.48428 -14.26081 -13.98587 -13.47069 -13.21760 -13.19072 -13.12574 -12.94381 -12.75118 -12.67299 -12.52323 -12.47495 -12.34823 -12.14014 -11.80692 -11.70765 -11.54951 -11.39242 -11.28433 -10.75004 -10.62884 -10.56578 -10.10264 -9.64056 -9.34897 -8.21799 -6.31841 1.38401 1.40224 1.51831 1.64389 2.02686 2.39802 2.82661 2.99980 3.12053 3.50433 3.76347 3.82841 3.86189 3.97846 4.05818 4.11854 4.14479 4.18108 4.26451 4.29648 4.35345 4.42275 4.52075 4.62003 4.67593 4.71222 4.75492 4.80147 4.84259 4.86808 4.89556 4.92962 5.02084 5.06450 5.09857 5.20964 5.34111 5.47129 5.53666 5.66132 5.80987 5.91900 5.95175 6.07779 6.20281 6.21494 6.47329 6.55853 6.84000 7.26792 7.37343 8.89145 Molecular weight = 313.22amu Principal moments of inertia in cm(-1) A = 0.023247 B = 0.002461 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.172255 B =11372.858454 C =11842.723857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.084 3.916 3 H 0.104 0.896 4 C 0.153 3.847 5 H 0.068 0.932 6 C -0.143 4.143 7 N -0.713 5.713 8 C 0.531 3.469 9 O -0.571 6.571 10 C 0.080 3.920 11 H 0.109 0.891 12 N -0.831 5.831 13 C -0.119 4.119 14 C 0.030 3.970 15 C -0.543 4.543 16 H 0.054 0.946 17 C 0.005 3.995 18 N -0.927 5.927 19 Si 0.958 3.042 20 H -0.266 1.266 21 H -0.281 1.281 22 H -0.277 1.277 23 N -0.524 5.524 24 C 0.010 3.990 25 C 0.065 3.935 26 O -0.406 6.406 27 C 0.061 3.939 28 C 0.016 3.984 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.029 0.971 34 H 0.063 0.937 35 H 0.412 0.588 36 H 0.352 0.648 37 H 0.343 0.657 38 H 0.067 0.933 39 H 0.042 0.958 40 H 0.001 0.999 41 H 0.003 0.997 42 H 0.264 0.736 43 H 0.084 0.916 44 H 0.042 0.958 45 H 0.107 0.893 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.113 0.887 49 H 0.101 0.899 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.872 -6.762 25.012 25.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.025 4.025 3 H 0.122 0.878 4 C 0.048 3.952 5 H 0.086 0.914 6 C -0.201 4.201 7 N -0.366 5.366 8 C 0.317 3.683 9 O -0.449 6.449 10 C -0.035 4.035 11 H 0.127 0.873 12 N -0.362 5.362 13 C -0.159 4.159 14 C -0.007 4.007 15 C -0.581 4.581 16 H 0.072 0.928 17 C -0.194 4.194 18 N -0.567 5.567 19 Si 0.784 3.216 20 H -0.190 1.190 21 H -0.206 1.206 22 H -0.202 1.202 23 N -0.249 5.249 24 C -0.118 4.118 25 C -0.012 4.012 26 O -0.325 6.325 27 C -0.015 4.015 28 C -0.111 4.111 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.248 0.752 36 H 0.167 0.833 37 H 0.156 0.844 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.020 0.980 41 H 0.021 0.979 42 H 0.073 0.927 43 H 0.102 0.898 44 H 0.061 0.939 45 H 0.125 0.875 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.131 0.869 49 H 0.119 0.881 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.941 -7.827 25.538 26.728 hybrid contribution 0.469 1.420 -1.727 2.284 sum -0.471 -6.407 23.811 24.663 Atomic orbital electron populations 1.22422 0.96557 1.02144 1.03083 1.21842 0.93280 0.98794 0.88590 0.87826 1.20873 0.95624 0.95313 0.83345 0.91378 1.21951 0.94460 1.02685 1.01036 1.45880 1.70337 1.12929 1.07428 1.20634 0.75414 0.87316 0.84906 1.90619 1.51464 1.16754 1.86067 1.21421 0.97459 0.93666 0.90947 0.87311 1.58768 1.42856 1.18006 1.16541 1.22110 0.96336 0.98328 0.99108 1.18971 0.95570 0.93626 0.92565 1.21647 0.95247 1.25566 1.15606 0.92753 1.25865 0.98732 0.97676 0.97096 1.70066 1.24230 1.37596 1.24806 0.85495 0.79661 0.78347 0.78132 1.18984 1.20634 1.20244 1.62409 1.58817 1.01928 1.01741 1.22885 0.98595 0.90246 1.00115 1.22726 0.99840 0.95535 0.83108 1.87961 1.79039 1.24496 1.40983 1.22806 0.99181 0.81453 0.98094 1.22871 0.99301 0.99295 0.89671 0.91151 0.91571 0.93206 0.90186 0.95196 0.91796 0.75202 0.83316 0.84394 0.91478 0.93923 0.98034 0.97897 0.92749 0.89756 0.93949 0.87474 0.91994 0.92045 0.86881 0.88059 0.93722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.82 8.38 71.98 0.60 -2.21 16 2 C 0.08 1.28 2.02 44.91 0.09 1.37 16 3 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 4 C 0.15 3.19 1.62 44.99 0.07 3.26 16 5 H 0.07 1.71 6.07 -2.39 -0.01 1.69 16 6 C -0.14 -3.07 9.17 71.98 0.66 -2.41 16 7 N -0.71 -16.55 4.53 -442.54 -2.01 -18.56 16 8 C 0.53 16.64 7.04 87.66 0.62 17.26 16 9 O -0.57 -21.71 15.91 -3.03 -0.05 -21.76 16 10 C 0.08 2.63 3.21 44.17 0.14 2.77 16 11 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 12 N -0.83 -28.45 8.94 -171.80 -1.54 -29.99 16 13 C -0.12 -4.55 4.78 30.59 0.15 -4.41 16 14 C 0.03 1.45 4.74 29.85 0.14 1.59 16 15 C -0.54 -29.56 9.11 25.60 0.23 -29.33 16 16 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 17 C 0.00 0.26 5.46 84.66 0.46 0.72 16 18 N -0.93 -54.05 13.29 21.45 0.28 -53.77 16 19 Si 0.96 43.14 29.54 68.60 2.03 45.17 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 23 N -0.52 -7.66 3.86 -869.97 -3.36 -11.02 16 24 C 0.01 0.15 4.73 86.31 0.41 0.56 16 25 C 0.06 0.93 7.01 72.01 0.50 1.44 16 26 O -0.41 -6.90 10.83 -148.98 -1.61 -8.51 16 27 C 0.06 0.74 7.01 72.01 0.50 1.25 16 28 C 0.02 0.20 5.29 86.31 0.46 0.65 16 29 H 0.07 0.93 6.55 -2.39 -0.02 0.92 16 30 H 0.07 1.06 7.76 -2.39 -0.02 1.04 16 31 H 0.05 0.88 6.45 -2.39 -0.02 0.87 16 32 H 0.08 1.56 7.46 -2.39 -0.02 1.54 16 33 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 1.26 8.14 -2.38 -0.02 1.25 16 35 H 0.41 7.69 8.60 -92.70 -0.80 6.89 16 36 H 0.35 12.24 7.55 -89.69 -0.68 11.56 16 37 H 0.34 12.08 8.58 -89.70 -0.77 11.31 16 38 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.00 0.07 6.87 -2.39 -0.02 0.05 16 41 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 42 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 43 H 0.08 1.44 6.23 -2.39 -0.01 1.42 16 44 H 0.04 0.72 6.44 -2.39 -0.02 0.70 16 45 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 46 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.04 0.57 6.53 -2.39 -0.02 0.56 16 Total: -1.00 -66.71 386.61 -2.50 -69.21 By element: Atomic # 1 Polarization: 38.00 SS G_CDS: -1.29 Total: 36.71 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 5.04 Total: -7.48 kcal Atomic # 7 Polarization: -106.73 SS G_CDS: -6.61 Total: -113.34 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -1.66 Total: -30.27 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -66.71 -2.50 -69.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424157109.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.488 kcal (2) G-P(sol) polarization free energy of solvation -66.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds